Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000333

Physical Location & Seq

Genomic Coordinates Forward (+)

26207352 .. 26219286

Gene Structure 11935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2976 bp

ATGACTATGATGACTCCTCCACCTGTAGATCAAGAGGACGAAGAGATGCTGGTGCCGCATACGGATTTGGTCGAAGGTCCTCAGCCCATGGAAGCTCAAGTGGAGCCAGCGAGTACAGTTGATAATCAGCCAGTGGAGGAGCCTCCAACCATGAAATTTACTTGGACAATTGAGAGCTTTTCTAGGTTGAACACCAAAAAGCACTACTCTGACATGTTCATCGTCGGTGGTTATAAATGGCGGATACTGATTTTTCCTAAAGGAAACAATGTCGACTACTTGTCAATGTATTTGGATGTGGCGGATTCGCAGGCGCTGCCTTATGGTTGGAGTAGATATGCGCAGTTTAGCTTGGCTATAGTTAATCAGATTCACAACAAGTACTCAATTAGAAAGGACACACAGCACCAATTCAATGCACGAGAAAGTGATTGGGGATTCACATCATTCATGCCTCTCAGTGATCTTTATGACCCCAGCAGGGGTTACCTGGTGAATGATACAGTCGTTGTTGAAGCCGAGGTTGTTGTCCGTAAGGTCCTTGATTACTGGTCGTATGACTCAAAAAAGGAAACTGGTTTTGTTGGGCTCAAGAATCAGGGAGCAACTTGTTATATGAATTCACTCCTCCAGACTTTATACCATATACCTTACTTCAGAAAGGCGGTGTATCATATGCCAACAACTGAGAATGACATGCCTTCGGGAAGCATCCCTTTGGCTCTTCAAAGTTTATTCTATAAGCTTCAATACAATGAGAGCAGTGTTGCAACTAAAGAATTAACCAAGTCTTTTGGATGGGATACATATGATTCGTTTATGCAACATGATGTGCAGGAACTCAATAGAGTTCTATGTGAAAAGCTTGAGGATAAAATGAAGGGAACTGTGGTGGAGGGTACTATACAGCAGTTATTTGAAGGACATCACATGAATTACATTGAATGCATCAATGTGGACTACAAATCTACAAGAAAAGAGTCATTTTATGATCTCCAGCTTGATGTAAAAGGATGTCGTGATGTTTACGCTTCTTTTGATAAGTATGTGGAAGTTGAACGTCTTGAGGGTGACAATAAGTACCATGCTGAAGAACATGGTTTGCAGGATGCTAAGAAGGGTGTCCTGTTTATTGACTTCCCTCCAGTTCTTCAGCTTCAGCTAAAGCGATTTGAGTATGATTTTATGAGGGACACTATGGTAAAGATAAATGATCGCTATGAATTTCCTCTTCAACTTGACCTTGATAGAGAGAATGGCAAATATCTGTCACCTGAATCAGATAGGACTGTGCGGAACCTCTACACTCTTCATAGTGTCTTAGTTCATAGTGGTGGCGTGCATGGAGGACATTATTATGCTTTTATCAGGCCAACCCTTACTGATCAGTGGTATAAGTTTGATGATGAACGCGTGACAAAAGAGGATGTGAAGAGAGCATTAGAAGAACAGTATGGTGGTGAGGAAGAGATGCCCCAGACCAATCCTGGTTTTAATAATACTCCTTTCAAGTTTACAAAATACTCGAACGCATACATGCTTGTGTACATCCGGGACAGTGACAAGGACAAAATAATATGTGATGTGGATGAGAAGGACATAGCTGAACACCTAAGGATAAGGTTGAAGAAAGAACAAGAGGAGAAGGAGGACAAGAGGAGATATAAAGCACAGGCCCATCTTTATACTATTATTAAGGTTGCTCGAGATGAGGACCTAGCAGAGCAAATTGGAAGGGACATATATTTTGACCTTGTGGACCATGACAAAGTTCGTAGTTTTCGAATCCAGAAACAGACGCCCTTTAACCTTTTCAAGGAGGAAGTTGCGAAAGAGTTGGGGATACCAGTGCAATTTCAGCGATTCTGGATTTGGGCCAAGAGGCAAAACCACACATATCGTCCCAACCGACCATTGACACCCCAGGAAGAATTACAAACAGTTGGACAATTGAGGGAGGCATCAAATAAAACACACAATGCAGAGCTCAAGTTGTTTTTGGAAGTAGAGCTTGGGCCGGAGAAAATTCCTATTCCTCCACCAGACAAAACCAAGGATGATATTCTGCTTTTCTTTAAGCTTTATGAACCTGAGAAACGAGAATTACGGTTTGTTGGTCGGCTTTTTGTTAAGAGTTCTACCAAGCCAATAGAAATAATAGCAAAAATTAATCAAATGGCTGGTTTTGCTCCTGATGAAGAAATTGAACTCTATGAGGAAATAAAGTTTGAGCCTTGTATCATGTGTGAACATCTTGACAAGAGGACCTCATTTCGATTAAGTCAGATTGAAGATGGGGACATTATATGCTTTCAAAAACCTACTCCTCTTGAAAGTGAAGAATGTAAATATCCTGACGTCCCTTCGTTTTTGGAATATGTACACAACCGTCAGATTGTTCATTTTCGCTCTTTGGAGAAACCAAAAGAGGATGATTTTTCTTTAGAATTGTCAAAGCTACACACTTATGATGATGTGGTGGAGAAGGTGGCTTCCCAAATTGGTTTGGACGATCCTACTAAAATCAGACTCACTGCGCATAACTGCTATTCTCAACAACCTAAACCCCAACCCATCAAATATCGAGGAGTAGAGCATTTAACAGATATGCTGGTCCACTATAATCAAAGTTCTGATATTTTGTATTATGAAGTCTTGGACATCCCCCTTCCAGAATTACAAGGCCTAAAGAATCTGAAAGTTGCATTTCATCATGCTACAAAAGATGAGGTGGTGATTCACAATATAAGATTGCCCAAGCAGAGCACTGTCGGGGATGTGATTAATGTACTAAAAACGAAGGTAGAACTATCTCAACCAAATGCAGAACTCCGACTTCTTGAGGTTTTCTATCACAAGATCTACAAGATCTTCCCACACAGTGAAAAAATTGAGAATATAAATGACCAGTACTGGACATTGCGTGCAGAGGAGATTCCAGAAGAAGAGAAAACTTGGGTCTTCATGACCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203

Pfam Domains

Protein Families

MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

991

Amino Acids

116.38

Weight (kDa)

5.41

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	52 - 175	1.6e-39	MATH domain
MATH	PF00917	57 - 177	2.5e-18	MATH domain
UCH	PF00443	195 - 516	1.4e-59	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	195 - 470	6.2e-15	Ubiquitin carboxyl-terminal hydrolase
USP7_ICP0_bdg	PF12436	620 - 871	2.6e-78	ICP0-binding domain of Ubiquitin-specific protease 7
USP7_C2	PF14533	881 - 984	5e-25	Ubiquitin-specific protease C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0000333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca	FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica	MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica	Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis	pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis	RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata	RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora	Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa	Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha	Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana	Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	234
AatII	GACGTC	1 cut(s)	2361
Acc16I	TGCGCA	2 cut(s)	342, 2538
AccB1I	GGYRCC	1 cut(s)	52
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	1413
AciI	CCGC	6 cut(s)	56, 241, 302, 665, 1294, 2970
AclWI	GGATC	1 cut(s)	2507
AcsI	RAATTY	4 cut(s)	155, 619, 1223, 2025
AcuI	CTGAAG	4 cut(s)	640, 1110, 1136, 1142
AcyI	GRCGYC	2 cut(s)	1799, 2358
AdeI	CACNNNGTG	1 cut(s)	2882
AfaI	GTAC	8 cut(s)	115, 383, 901, 1082, 1547, 2382, 2790, 2912
AfiI	CCNNNNNNNGG	3 cut(s)	481, 482, 1816
AflIII	ACRYGT	2 cut(s)	213, 1411
AhdI	GACNNNNNGTC	1 cut(s)	280
AjnI	CCWGG	3 cut(s)	489, 1486, 1923
AjuI	GAANNNNNNNTTGG	2 cut(s)	1995, 2027
Alw21I	GWGCWC	2 cut(s)	1989, 2768
AlwI	GGATC	1 cut(s)	2507
AlwNI	CAGNNNCTG	1 cut(s)	316
Ama87I	CYCGRG	1 cut(s)	1704
AoxI	GGCC	5 cut(s)	1370, 1674, 1875, 2015, 2683
ApeKI	GCWGC	1 cut(s)	316
ApoI	RAATTY	4 cut(s)	155, 619, 1223, 2025
ArsI	GACNNNNNNTTYG	2 cut(s)	1730, 1762
AseI	ATTAAT	2 cut(s)	2169, 2784
AspLEI	GCGC	3 cut(s)	316, 343, 2539
AspS9I	GGNCC	9 cut(s)	77, 538, 1675, 1714, 1759, 1875, 2015, 2265, 2614
AsuC2I	CCSGG	1 cut(s)	1553
AsuHPI	GGTGA	5 cut(s)	505, 1082, 1263, 1472, 2746
AsuII	TTCGAA	1 cut(s)	1783
AvaI	CYCGRG	1 cut(s)	1704
AvaII	GGWCC	6 cut(s)	77, 538, 1714, 1759, 2265, 2614
AxyI	CCTNAGG	1 cut(s)	1613
BaeI	ACNNNNGTAYC	2 cut(s)	492, 525
BanI	GGYRCC	1 cut(s)	52
BanII	GRGCYC	2 cut(s)	591, 1989
BauI	CACGAG	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	2953
Bbv12I	GWGCWC	2 cut(s)	1989, 2768
BbvCI	CCTCAGC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	303
BccI	CCATC	4 cut(s)	792, 1686, 2288, 2582
BciT130I	CCWGG	3 cut(s)	491, 1488, 1925
BciVI	GTATCC	3 cut(s)	237, 796, 1836
BclI	TGATCA	1 cut(s)	1384
BcnI	CCSGG	1 cut(s)	1553
BfaI	CTAG	2 cut(s)	183, 1718
BfmI	CTRYAG	2 cut(s)	24, 357
BfoI	RGCGCY	1 cut(s)	317
BfuI	GTATCC	3 cut(s)	237, 796, 1836
BglII	AGATCT	2 cut(s)	2859, 2868
BisI	GCNGC	2 cut(s)	56, 317
BlsI	GCNGC	2 cut(s)	57, 318
BmcAI	AGTACT	2 cut(s)	383, 2912
Bme1390I	CCNGG	4 cut(s)	491, 1488, 1553, 1925
Bme18I	GGWCC	6 cut(s)	77, 538, 1714, 1759, 2265, 2614
BmeRI	GACNNNNNGTC	1 cut(s)	280
BmeT110I	CYCGRG	1 cut(s)	1704
BmgT120I	GGNCC	9 cut(s)	77, 538, 1675, 1714, 1759, 1875, 2015, 2265, 2614
BmiI	GGNNCC	4 cut(s)	54, 105, 141, 1298
BmrFI	CCNGG	4 cut(s)	491, 1488, 1553, 1925
BmsI	GCATC	6 cut(s)	36, 720, 957, 1099, 1461, 1970
BpiI	GAAGAC	1 cut(s)	2953
BpmI	CTGGAG	3 cut(s)	614, 980, 1128
Bpu10I	CCTNAGC	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	1783
BpuEI	CTTGAG	6 cut(s)	81, 575, 887, 1085, 1973, 2861
BpuMI	CCSGG	1 cut(s)	1553
BsaBI	GATNNNNATC	1 cut(s)	442
BsaHI	GRCGYC	2 cut(s)	1799, 2358
BsaJI	CCNNGG	4 cut(s)	87, 519, 1923, 2052
Bsc4I	CCNNNNNNNGG	3 cut(s)	481, 482, 1816
Bse1I	ACTGG	7 cut(s)	131, 554, 580, 1145, 1847, 2908, 2918
Bse21I	CCTNAGG	1 cut(s)	1613
Bse3DI	GCAATG	1 cut(s)	2918
Bse8I	GATNNNNATC	1 cut(s)	442
BseBI	CCWGG	3 cut(s)	491, 1488, 1925
BseDI	CCNNGG	4 cut(s)	87, 519, 1923, 2052
BseJI	GATNNNNATC	1 cut(s)	442
BseLI	CCNNNNNNNGG	3 cut(s)	481, 482, 1816
BseMI	GCAATG	1 cut(s)	2918
BseMII	CTCAG	4 cut(s)	95, 472, 678, 2082
BseNI	ACTGG	7 cut(s)	131, 554, 580, 1145, 1847, 2908, 2918
BseRI	GAGGAG	8 cut(s)	6, 152, 617, 1655, 1672, 2316, 2601, 2945
BseXI	GCAGC	1 cut(s)	303
BseYI	CCCAGC	1 cut(s)	476
BsgI	GTGCAG	2 cut(s)	854, 2946
Bsh1236I	CGCG	1 cut(s)	1413
BshFI	GGCC	5 cut(s)	1372, 1676, 1877, 2017, 2685
BshNI	GGYRCC	1 cut(s)	52
BsiHKAI	GWGCWC	2 cut(s)	1989, 2768
BsiHKCI	CYCGRG	1 cut(s)	1704
BsiSI	CCGG	2 cut(s)	1552, 2018
BslFI	GGGAC	6 cut(s)	1205, 1568, 1751, 1887, 2312, 2345
BslI	CCNNNNNNNGG	3 cut(s)	481, 482, 1816
BsmFI	GGGAC	6 cut(s)	1205, 1568, 1751, 1887, 2312, 2345
BsmI	GAATGC	1 cut(s)	950
BsnI	GGCC	5 cut(s)	1372, 1676, 1877, 2017, 2685
BsoBI	CYCGRG	1 cut(s)	1704
Bsp119I	TTCGAA	1 cut(s)	1783
Bsp1286I	GDGCHC	3 cut(s)	591, 1989, 2768
Bsp1407I	TGTACA	2 cut(s)	1545, 2380
Bsp143I	GATC	8 cut(s)	28, 463, 991, 1213, 1384, 2512, 2859, 2868
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	6 cut(s)	56, 241, 302, 665, 1294, 2970
BspANI	GGCC	5 cut(s)	1372, 1676, 1877, 2017, 2685
BspCNI	CTCAG	4 cut(s)	94, 471, 679, 2083
BspFNI	CGCG	1 cut(s)	1413
BspHI	TCATGA	1 cut(s)	2964
BspLI	GGNNCC	4 cut(s)	54, 105, 141, 1298
BspPI	GGATC	1 cut(s)	2507
BspQI	GCTCTTC	1 cut(s)	729
BspT104I	TTCGAA	1 cut(s)	1783
BspT107I	GGYRCC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	2918
BsrGI	TGTACA	2 cut(s)	1545, 2380
BsrI	ACTGG	7 cut(s)	131, 554, 580, 1145, 1847, 2908, 2918
BssECI	CCNNGG	4 cut(s)	87, 519, 1923, 2052
BssMI	GATC	8 cut(s)	28, 463, 991, 1213, 1384, 2512, 2859, 2868
BssNI	GRCGYC	2 cut(s)	1799, 2358
BssSI	CACGAG	1 cut(s)	420
BssT1I	CCWWGG	2 cut(s)	87, 2052
Bst2BI	CACGAG	1 cut(s)	420
Bst2UI	CCWGG	3 cut(s)	491, 1488, 1925
Bst6I	CTCTTC	7 cut(s)	36, 729, 1236, 1314, 1427, 1461, 2940
BstACI	GRCGYC	2 cut(s)	1799, 2358
BstAPI	GCANNNNNTGC	1 cut(s)	316
BstAUI	TGTACA	2 cut(s)	1545, 2380
BstBI	TTCGAA	1 cut(s)	1783
BstC8I	GCNNGC	4 cut(s)	108, 312, 1340, 2925
BstDEI	CTNAG	7 cut(s)	81, 458, 687, 1113, 1321, 1613, 2091
BstDSI	CCRYGG	1 cut(s)	87
BstEII	GGTNACC	1 cut(s)	485
BstENI	CCTNNNNNAGG	1 cut(s)	1814
BstFNI	CGCG	1 cut(s)	1413
BstH2I	RGCGCY	1 cut(s)	317
BstHHI	GCGC	3 cut(s)	316, 343, 2539
BstKTI	GATC	8 cut(s)	31, 466, 994, 1216, 1387, 2515, 2862, 2871
BstMBI	GATC	8 cut(s)	28, 463, 991, 1213, 1384, 2512, 2859, 2868
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 316, 1858, 2186
BstNI	CCWGG	3 cut(s)	491, 1488, 1925
BstNSI	RCATGY	3 cut(s)	217, 700, 1540
BstPI	GGTNACC	1 cut(s)	485
BstSCI	CCNGG	4 cut(s)	489, 1486, 1551, 1923
BstSFI	CTRYAG	2 cut(s)	24, 357
BstUI	CGCG	1 cut(s)	1413
BstV1I	GCAGC	1 cut(s)	303
BstV2I	GAAGAC	1 cut(s)	2953
BstX2I	RGATCY	2 cut(s)	2859, 2868
BstYI	RGATCY	2 cut(s)	2859, 2868
Bsu36I	CCTNAGG	1 cut(s)	1613
BsuI	GTATCC	3 cut(s)	237, 796, 1836
BsuRI	GGCC	5 cut(s)	1372, 1676, 1877, 2017, 2685
BtgI	CCRYGG	1 cut(s)	87
BtsI	GCAGTG	2 cut(s)	769, 2532
BtsIMutI	CAGTG	9 cut(s)	138, 466, 769, 1394, 1564, 1854, 2532, 2766, 2887
Cac8I	GCNNGC	4 cut(s)	108, 312, 1340, 2925
CaiI	CAGNNNCTG	1 cut(s)	316
CciI	TCATGA	1 cut(s)	2964
CfoI	GCGC	3 cut(s)	316, 343, 2539
Cfr13I	GGNCC	9 cut(s)	77, 538, 1675, 1714, 1759, 1875, 2015, 2265, 2614
CseI	GACGC	1 cut(s)	1807
CsiI	ACCWGGT	1 cut(s)	489
Csp6I	GTAC	8 cut(s)	114, 382, 900, 1081, 1546, 2381, 2789, 2911
CviQI	GTAC	8 cut(s)	114, 382, 900, 1081, 1546, 2381, 2789, 2911
DdeI	CTNAG	7 cut(s)	81, 458, 687, 1113, 1321, 1613, 2091
DpnI	GATC	8 cut(s)	30, 465, 993, 1215, 1386, 2514, 2861, 2870
DpnII	GATC	8 cut(s)	28, 463, 991, 1213, 1384, 2512, 2859, 2868
DraIII	CACNNNGTG	1 cut(s)	2882
DriI	GACNNNNNGTC	1 cut(s)	280
Eam1104I	CTCTTC	7 cut(s)	36, 729, 1236, 1314, 1427, 1461, 2940
Eam1105I	GACNNNNNGTC	1 cut(s)	280
EarI	CTCTTC	7 cut(s)	36, 729, 1236, 1314, 1427, 1461, 2940
EciI	GGCGGA	2 cut(s)	256, 317
Ecl136II	GAGCTC	1 cut(s)	1987
Eco130I	CCWWGG	2 cut(s)	87, 2052
Eco147I	AGGCCT	1 cut(s)	2685
Eco24I	GRGCYC	2 cut(s)	591, 1989
Eco47I	GGWCC	6 cut(s)	77, 538, 1714, 1759, 2265, 2614
Eco53kI	GAGCTC	1 cut(s)	1987
Eco57I	CTGAAG	4 cut(s)	640, 1110, 1136, 1142
Eco81I	CCTNAGG	1 cut(s)	1613
Eco88I	CYCGRG	1 cut(s)	1704
Eco91I	GGTNACC	1 cut(s)	485
EcoICRI	GAGCTC	1 cut(s)	1987
EcoNI	CCTNNNNNAGG	1 cut(s)	1814
EcoO109I	RGGNCCY	4 cut(s)	77, 538, 1714, 2265
EcoO65I	GGTNACC	1 cut(s)	485
EcoRI	GAATTC	1 cut(s)	619
EcoRII	CCWGG	3 cut(s)	489, 1486, 1923
EcoT14I	CCWWGG	2 cut(s)	87, 2052
EcoT22I	ATGCAT	1 cut(s)	950
EcoT38I	GRGCYC	2 cut(s)	591, 1989
ErhI	CCWWGG	2 cut(s)	87, 2052
FalI	AAGNNNNNCTT	4 cut(s)	700, 732, 1995, 2027
FaqI	GGGAC	6 cut(s)	1205, 1568, 1751, 1887, 2312, 2345
FauNDI	CATATG	2 cut(s)	675, 808
FbaI	TGATCA	1 cut(s)	1384
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	56, 317
FriOI	GRGCYC	2 cut(s)	591, 1989
Fsp4HI	GCNGC	2 cut(s)	56, 317
FspBI	CTAG	2 cut(s)	183, 1718
FspI	TGCGCA	2 cut(s)	342, 2538
GlaI	GCGC	3 cut(s)	315, 342, 2538
GluI	GCNGC	2 cut(s)	56, 317
GsaI	CCCAGC	1 cut(s)	480
GsuI	CTGGAG	3 cut(s)	614, 980, 1128
HaeII	RGCGCY	1 cut(s)	317
HaeIII	GGCC	5 cut(s)	1372, 1676, 1877, 2017, 2685
HapII	CCGG	2 cut(s)	1552, 2018
HgaI	GACGC	1 cut(s)	1807
HhaI	GCGC	3 cut(s)	316, 343, 2539
Hin1I	GRCGYC	2 cut(s)	1799, 2358
Hin6I	GCGC	3 cut(s)	314, 341, 2537
HinP1I	GCGC	3 cut(s)	314, 341, 2537
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HindIII	AAGCTT	3 cut(s)	743, 863, 2078
HpaII	CCGG	2 cut(s)	1552, 2018
HphI	GGTGA	5 cut(s)	505, 1082, 1263, 1472, 2746
Hpy166II	GTNNAC	9 cut(s)	274, 958, 1027, 1515, 1546, 1759, 2249, 2383, 2617
Hpy8I	GTNNAC	9 cut(s)	274, 958, 1027, 1515, 1546, 1759, 2249, 2383, 2617
Hpy99I	CGWCG	1 cut(s)	227
HpyCH4IV	ACGT	2 cut(s)	1060, 2358
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 316, 1858, 2186
HpyF3I	CTNAG	7 cut(s)	81, 458, 687, 1113, 1321, 1613, 2091
HpySE526I	ACGT	2 cut(s)	1060, 2358
Hsp92I	GRCGYC	2 cut(s)	1799, 2358
HspAI	GCGC	3 cut(s)	314, 341, 2537
Ksp22I	TGATCA	1 cut(s)	1384
Kzo9I	GATC	8 cut(s)	28, 463, 991, 1213, 1384, 2512, 2859, 2868
LguI	GCTCTTC	1 cut(s)	729
LmnI	GCTCC	4 cut(s)	103, 139, 602, 2194
Lsp1109I	GCAGC	1 cut(s)	303
LweI	GCATC	6 cut(s)	36, 720, 957, 1099, 1461, 1970
MabI	ACCWGGT	1 cut(s)	489
MaeI	CTAG	2 cut(s)	183, 1718
MaeII	ACGT	2 cut(s)	1060, 2358
MaeIII	GTNAC	5 cut(s)	485, 1070, 1269, 1414, 1559
MalI	GATC	8 cut(s)	30, 465, 993, 1215, 1386, 2514, 2861, 2870
MboI	GATC	8 cut(s)	28, 463, 991, 1213, 1384, 2512, 2859, 2868
MfeI	CAATTG	2 cut(s)	168, 1949
MflI	RGATCY	2 cut(s)	2859, 2868
MhlI	GDGCHC	3 cut(s)	591, 1989, 2768
MluI	ACGCGT	1 cut(s)	1411
MlyI	GAGTC	4 cut(s)	7, 554, 989, 2523
MmeI	TCCRAC	4 cut(s)	170, 308, 1924, 2857
Mph1103I	ATGCAT	1 cut(s)	950
MslI	CAYNNNNRTG	5 cut(s)	953, 1332, 1356, 1541, 2466
MspI	CCGG	2 cut(s)	1552, 2018
MspR9I	CCNGG	4 cut(s)	491, 1488, 1553, 1925
MunI	CAATTG	2 cut(s)	168, 1949
Mva1269I	GAATGC	1 cut(s)	950
MvaI	CCWGG	3 cut(s)	491, 1488, 1925
MvnI	CGCG	1 cut(s)	1413
MwoI	GCNNNNNNNGC	4 cut(s)	55, 316, 1858, 2186
NciI	CCSGG	1 cut(s)	1553
NcoI	CCATGG	1 cut(s)	87
NdeI	CATATG	2 cut(s)	675, 808
NdeII	GATC	8 cut(s)	28, 463, 991, 1213, 1384, 2512, 2859, 2868
NlaIV	GGNNCC	4 cut(s)	54, 105, 141, 1298
NmeAIII	GCCGAG	1 cut(s)	544
NmuCI	GTSAC	4 cut(s)	1070, 1269, 1414, 1559
NsbI	TGCGCA	2 cut(s)	342, 2538
NsiI	ATGCAT	1 cut(s)	950
NspI	RCATGY	3 cut(s)	217, 700, 1540
NspV	TTCGAA	1 cut(s)	1783
PaeR7I	CTCGAG	1 cut(s)	1704
PagI	TCATGA	1 cut(s)	2964
PceI	AGGCCT	1 cut(s)	2685
PciI	ACATGT	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	729
PcsI	WCGNNNNNNNCGW	2 cut(s)	1780, 1906
PctI	GAATGC	1 cut(s)	950
PfoI	TCCNGGA	1 cut(s)	1551
PkrI	GCNGC	2 cut(s)	57, 318
PleI	GAGTC	4 cut(s)	7, 554, 988, 2523
PpsI	GAGTC	4 cut(s)	7, 554, 988, 2523
PpuMI	RGGWCCY	4 cut(s)	77, 538, 1714, 2265
PscI	ACATGT	1 cut(s)	213
PshBI	ATTAAT	2 cut(s)	2169, 2784
PsiI	TTATAA	1 cut(s)	234
Psp124BI	GAGCTC	1 cut(s)	1989
Psp5II	RGGWCCY	4 cut(s)	77, 538, 1714, 2265
Psp6I	CCWGG	3 cut(s)	489, 1486, 1923
PspEI	GGTNACC	1 cut(s)	485
PspFI	CCCAGC	1 cut(s)	476
PspGI	CCWGG	3 cut(s)	489, 1486, 1923
PspN4I	GGNNCC	4 cut(s)	54, 105, 141, 1298
PspPI	GGNCC	9 cut(s)	77, 538, 1675, 1714, 1759, 1875, 2015, 2265, 2614
PspPPI	RGGWCCY	4 cut(s)	77, 538, 1714, 2265
PstNI	CAGNNNCTG	1 cut(s)	316
PsuI	RGATCY	2 cut(s)	2859, 2868
RsaI	GTAC	8 cut(s)	115, 383, 901, 1082, 1547, 2382, 2790, 2912
RsaNI	GTAC	8 cut(s)	114, 382, 900, 1081, 1546, 2381, 2789, 2911
RseI	CAYNNNNRTG	5 cut(s)	953, 1332, 1356, 1541, 2466
SacI	GAGCTC	1 cut(s)	1989
SalI	GTCGAC	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	729
SatI	GCNGC	2 cut(s)	56, 317
Sau3AI	GATC	8 cut(s)	28, 463, 991, 1213, 1384, 2512, 2859, 2868
Sau96I	GGNCC	9 cut(s)	77, 538, 1675, 1714, 1759, 1875, 2015, 2265, 2614
ScaI	AGTACT	2 cut(s)	383, 2912
SchI	GAGTC	4 cut(s)	7, 554, 989, 2523
ScrFI	CCNGG	4 cut(s)	491, 1488, 1553, 1925
SduI	GDGCHC	3 cut(s)	591, 1989, 2768
SexAI	ACCWGGT	1 cut(s)	489
SfaNI	GCATC	6 cut(s)	36, 720, 957, 1099, 1461, 1970
SfcI	CTRYAG	2 cut(s)	24, 357
Sfr274I	CTCGAG	1 cut(s)	1704
SfuI	TTCGAA	1 cut(s)	1783
SinI	GGWCC	6 cut(s)	77, 538, 1714, 1759, 2265, 2614
SlaI	CTCGAG	1 cut(s)	1704
SmiMI	CAYNNNNRTG	5 cut(s)	953, 1332, 1356, 1541, 2466
SmlI	CTYRAG	7 cut(s)	96, 590, 866, 1064, 1704, 1988, 2840
SmoI	CTYRAG	7 cut(s)	96, 590, 866, 1064, 1704, 1988, 2840
SseBI	AGGCCT	1 cut(s)	2685
SsiI	CCGC	6 cut(s)	56, 241, 302, 665, 1294, 2970
SspMI	CTAG	2 cut(s)	183, 1718
SstI	GAGCTC	1 cut(s)	1989
StuI	AGGCCT	1 cut(s)	2685
StyD4I	CCNGG	4 cut(s)	489, 1486, 1551, 1923
StyI	CCWWGG	2 cut(s)	87, 2052
TaiI	ACGT	2 cut(s)	1063, 2361
TaqI	TCGA	7 cut(s)	72, 273, 1526, 1705, 1783, 2275, 2584
TatI	WGTACW	6 cut(s)	113, 381, 1545, 2380, 2788, 2910
TauI	GCSGC	1 cut(s)	58
TscAI	CASTG	9 cut(s)	138, 466, 769, 1394, 1564, 1854, 2539, 2773, 2887
TseFI	GTSAC	4 cut(s)	1070, 1269, 1414, 1559
TseI	GCWGC	1 cut(s)	316
Tsp45I	GTSAC	4 cut(s)	1070, 1269, 1414, 1559
TspGWI	ACGGA	2 cut(s)	77, 521
TspRI	CASTG	9 cut(s)	138, 466, 769, 1394, 1564, 1854, 2539, 2773, 2887
VpaK11BI	GGWCC	6 cut(s)	77, 538, 1714, 1759, 2265, 2614
VspI	ATTAAT	2 cut(s)	2169, 2784
XagI	CCTNNNNNAGG	1 cut(s)	1814
XapI	RAATTY	4 cut(s)	155, 619, 1223, 2025
XceI	RCATGY	3 cut(s)	217, 700, 1540
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1484
XhoI	CTCGAG	1 cut(s)	1704
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	2 cut(s)	183, 1718
ZraI	GACGTC	1 cut(s)	2359
ZrmI	AGTACT	2 cut(s)	383, 2912
Zsp2I	ATGCAT	1 cut(s)	950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.