Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000333

Physical Location & Seq

Genomic Coordinates Reverse (-)

5496183 .. 5499504

Gene Structure 3322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1048400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTACTTAGATGCTGCAGATTCTGGGACATTGCCAGACGGGTGGAGTCGATATGTTCAGTTCAGCTTGGCTGTAGTCAATCAGATCCATAGCAAGGATTCAGTAACAAAGGAAACACATCACCAGTTCTGTACAAATGAAATTGGCCTTGGATTCACCTGCTTCATGCCTCTCATTGAGCTTTATGATCCTAGTATGGGTTATCTGGTGAATGATACAGTCTTCATTTGTCTCTACATCAGGACCATAAGGTTGAAGAACGAAGAAGAAAAGGAAGAAACAAGGAGATACAAGGCACAAGTGGACTGTTATACTCTTATTAGGGTGAAGACTTCTTGTACCTACCACTGCTTGTTTAGAAGTGCTACTACAGGTATTTGGTTTACATCCAAAAATTACGGCAGACGGAATTTATTTATATGGTCAGTTTCTCAAGACGTGGACCTGGAAAAACAGATTGAAAGGGACATATATTTTGACCTTGTGGACCATGACAAAATTCGTAGTTTTCCTATTAAAAAAAAGATGCACTTTTGGCGTTTCAAGGAGGACGTTGCAGAAGAGTTTGGAATACCAGTGCAATTTCAGCGCTTCTGGTATTGGGTTAAGAGAAAAAACCAAACATATCGCCCTTGTCGACCATTGACACCCAAGGAGGAATCACAATCTGTATTTACTTTACACTTCATTTCTGGTAGATGCAAAATCCCCAATACAGGCTGCGGGAACTTTACCTGCTTTTTAGTGTTCTTGGTTATTGTCGTAGTTAGTGTTACGTCAATCATAAGTTCTGCTTTCAAGTGTCCATCTAAGAGACTGAATTGTCACTCTGTTTCATTTCAGACAAGTTTGAAAAGAAAAAAAGAACAAGAGGAGGAGGAGGACGAAAAATGGCATAAGACACAAGCTCAACTTTATACTATCATTAAGATCGTTCATTTCCGTTCTTTGGAGAAGCCAAACGAGGATGATTTTATTTCAGAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203

Pfam Domains

Protein Families

MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

330

Amino Acids

38.92

Weight (kDa)

8.5

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	1 - 78	1.3e-13	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca	FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica	MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica	Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis	pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis	RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata	RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora	Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa	Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha	Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana	Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	167
AasI	GACNNNNNNGTC	1 cut(s)	822
Acc36I	ACCTGC	2 cut(s)	167, 743
AccI	GTMKAC	1 cut(s)	637
AciI	CCGC	1 cut(s)	723
AclWI	GGATC	2 cut(s)	79, 182
AcsI	RAATTY	2 cut(s)	409, 498
AfaI	GTAC	3 cut(s)	5, 133, 340
AfeI	AGCGCT	1 cut(s)	590
AfiI	CCNNNNNNNGG	4 cut(s)	94, 197, 716, 949
AgsI	TTSAA	5 cut(s)	256, 461, 544, 799, 853
AjiI	CACGTC	1 cut(s)	439
AjnI	CCWGG	1 cut(s)	444
AjuI	GAANNNNNNNTTGG	2 cut(s)	132, 164
AluBI	AGCT	3 cut(s)	66, 181, 908
AluI	AGCT	3 cut(s)	66, 181, 908
Alw26I	GTCTC	2 cut(s)	236, 808
AlwI	GGATC	2 cut(s)	79, 182
AlwNI	CAGNNNCTG	1 cut(s)	23
Aor51HI	AGCGCT	1 cut(s)	590
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	2 cut(s)	14, 720
ApoI	RAATTY	2 cut(s)	409, 498
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
AspLEI	GCGC	1 cut(s)	591
AspS9I	GGNCC	3 cut(s)	243, 442, 487
AsuHPI	GGTGA	4 cut(s)	113, 148, 220, 337
AvaII	GGWCC	3 cut(s)	243, 442, 487
BarI	GAAGNNNNNNTAC	2 cut(s)	352, 384
BbsI	GAAGAC	2 cut(s)	214, 335
BbvI	GCAGC	1 cut(s)	707
BccI	CCATC	1 cut(s)	814
BceAI	ACGGC	1 cut(s)	415
BciT130I	CCWGG	1 cut(s)	446
BcoDI	GTCTC	2 cut(s)	236, 808
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	3 cut(s)	15, 72, 369
BfoI	RGCGCY	1 cut(s)	592
BfuAI	ACCTGC	2 cut(s)	167, 743
BisI	GCNGC	2 cut(s)	15, 721
BlsI	GCNGC	2 cut(s)	16, 722
Bme1390I	CCNGG	1 cut(s)	446
Bme18I	GGWCC	3 cut(s)	243, 442, 487
BmgBI	CACGTC	1 cut(s)	439
BmgT120I	GGNCC	3 cut(s)	243, 442, 487
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	2 cut(s)	516, 689
BpiI	GAAGAC	2 cut(s)	214, 335
BpuEI	CTTGAG	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	148, 651
Bsc4I	CCNNNNNNNGG	4 cut(s)	94, 197, 716, 949
Bse1I	ACTGG	2 cut(s)	124, 575
Bse3DI	GCAATG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	2 cut(s)	148, 651
BseGI	GGATG	2 cut(s)	386, 973
BseLI	CCNNNNNNNGG	4 cut(s)	94, 197, 716, 949
BseMI	GCAATG	1 cut(s)	29
BseNI	ACTGG	2 cut(s)	124, 575
BseRI	GAGGAG	3 cut(s)	887, 890, 893
BseXI	GCAGC	1 cut(s)	707
BshFI	GGCC	1 cut(s)	147
BslFI	GGGAC	2 cut(s)	40, 479
BslI	CCNNNNNNNGG	4 cut(s)	94, 197, 716, 949
BsmAI	GTCTC	2 cut(s)	236, 808
BsmFI	GGGAC	2 cut(s)	40, 479
BsnI	GGCC	1 cut(s)	147
Bsp1407I	TGTACA	1 cut(s)	131
Bsp143I	GATC	3 cut(s)	84, 187, 930
BspACI	CCGC	1 cut(s)	723
BspANI	GGCC	1 cut(s)	147
BspMAI	CTGCAG	1 cut(s)	19
BspMI	ACCTGC	2 cut(s)	167, 743
BspPI	GGATC	2 cut(s)	79, 182
BsrDI	GCAATG	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	124, 575
BssECI	CCNNGG	2 cut(s)	148, 651
BssMI	GATC	3 cut(s)	84, 187, 930
BssT1I	CCWWGG	2 cut(s)	148, 651
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	2 cut(s)	220, 308
Bst6I	CTCTTC	1 cut(s)	555
BstAUI	TGTACA	1 cut(s)	131
BstDEI	CTNAG	2 cut(s)	7, 810
BstF5I	GGATG	2 cut(s)	386, 973
BstH2I	RGCGCY	1 cut(s)	592
BstHHI	GCGC	1 cut(s)	591
BstKTI	GATC	3 cut(s)	87, 190, 933
BstMAI	GTCTC	2 cut(s)	236, 808
BstMBI	GATC	3 cut(s)	84, 187, 930
BstMWI	GCNNNNNNNGC	2 cut(s)	535, 586
BstNI	CCWGG	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	444
BstSFI	CTRYAG	3 cut(s)	15, 72, 369
BstV1I	GCAGC	1 cut(s)	707
BstV2I	GAAGAC	2 cut(s)	214, 335
BstX2I	RGATCY	1 cut(s)	84
BstXI	CCANNNNNNTGG	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	147
BtrI	CACGTC	1 cut(s)	439
BtsCI	GGATG	2 cut(s)	386, 973
BtsI	GCAGTG	1 cut(s)	346
BtsIMutI	CAGTG	2 cut(s)	346, 582
BveI	ACCTGC	2 cut(s)	167, 743
CaiI	CAGNNNCTG	1 cut(s)	23
CfoI	GCGC	1 cut(s)	591
Cfr13I	GGNCC	3 cut(s)	243, 442, 487
Csp6I	GTAC	3 cut(s)	4, 132, 339
CviAII	CATG	2 cut(s)	166, 491
CviJI	RGCY	7 cut(s)	66, 71, 147, 181, 720, 908, 958
CviKI_1	RGCY	7 cut(s)	66, 71, 147, 181, 720, 908, 958
CviQI	GTAC	3 cut(s)	4, 132, 339
DdeI	CTNAG	2 cut(s)	7, 810
DpnI	GATC	3 cut(s)	86, 189, 932
DpnII	GATC	3 cut(s)	84, 187, 930
DrdI	GACNNNNNNGTC	1 cut(s)	822
DseDI	GACNNNNNNGTC	1 cut(s)	822
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Eco130I	CCWWGG	2 cut(s)	148, 651
Eco47I	GGWCC	3 cut(s)	243, 442, 487
Eco47III	AGCGCT	1 cut(s)	590
EcoRII	CCWGG	1 cut(s)	444
EcoT14I	CCWWGG	2 cut(s)	148, 651
ErhI	CCWWGG	2 cut(s)	148, 651
FaeI	CATG	2 cut(s)	169, 494
FalI	AAGNNNNNCTT	6 cut(s)	515, 547, 778, 810, 897, 929
FaqI	GGGAC	2 cut(s)	40, 479
FatI	CATG	2 cut(s)	165, 490
FauI	CCCGC	1 cut(s)	716
FblI	GTMKAC	1 cut(s)	637
Fnu4HI	GCNGC	2 cut(s)	15, 721
FokI	GGATG	2 cut(s)	373, 980
Fsp4HI	GCNGC	2 cut(s)	15, 721
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	590
GluI	GCNGC	2 cut(s)	15, 721
HaeII	RGCGCY	1 cut(s)	592
HaeIII	GGCC	1 cut(s)	147
HhaI	GCGC	1 cut(s)	591
Hin1II	CATG	2 cut(s)	169, 494
Hin6I	GCGC	1 cut(s)	589
HinP1I	GCGC	1 cut(s)	589
HincII	GTYRAC	1 cut(s)	638
HindII	GTYRAC	1 cut(s)	638
HinfI	GANTC	5 cut(s)	20, 46, 98, 153, 659
HphI	GGTGA	4 cut(s)	113, 148, 220, 337
Hpy166II	GTNNAC	5 cut(s)	304, 384, 442, 487, 638
Hpy188I	TCNGA	3 cut(s)	84, 843, 982
Hpy188III	TCNNGA	2 cut(s)	241, 434
Hpy8I	GTNNAC	5 cut(s)	304, 384, 442, 487, 638
HpyCH4III	ACNGT	2 cut(s)	220, 308
HpyCH4IV	ACGT	3 cut(s)	438, 552, 776
HpyCH4V	TGCA	5 cut(s)	17, 529, 557, 580, 702
HpyF10VI	GCNNNNNNNGC	2 cut(s)	535, 586
HpyF3I	CTNAG	2 cut(s)	7, 810
HpySE526I	ACGT	3 cut(s)	438, 552, 776
Hsp92II	CATG	2 cut(s)	169, 494
HspAI	GCGC	1 cut(s)	589
Kzo9I	GATC	3 cut(s)	84, 187, 930
Lsp1109I	GCAGC	1 cut(s)	707
LweI	GCATC	2 cut(s)	516, 689
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	3 cut(s)	438, 552, 776
MaeIII	GTNAC	3 cut(s)	103, 772, 824
MalI	GATC	3 cut(s)	86, 189, 932
MboI	GATC	3 cut(s)	84, 187, 930
MboII	GAAGA	7 cut(s)	214, 268, 275, 278, 287, 340, 572
MflI	RGATCY	1 cut(s)	84
MluCI	AATT	7 cut(s)	141, 394, 409, 498, 581, 820, 983
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	8 cut(s)	180, 541, 649, 865, 868, 871, 874, 958
MseI	TTAA	3 cut(s)	516, 606, 927
MspR9I	CCNGG	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	2 cut(s)	535, 586
NdeII	GATC	3 cut(s)	84, 187, 930
NlaIII	CATG	2 cut(s)	169, 494
NmuCI	GTSAC	1 cut(s)	824
PaqCI	CACCTGC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	634
PfeI	GAWTC	4 cut(s)	20, 98, 153, 659
PkrI	GCNGC	2 cut(s)	16, 722
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspPI	GGNCC	3 cut(s)	243, 442, 487
PstI	CTGCAG	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	84
RsaI	GTAC	3 cut(s)	5, 133, 340
RsaNI	GTAC	3 cut(s)	4, 132, 339
SalI	GTCGAC	1 cut(s)	636
SaqAI	TTAA	3 cut(s)	516, 606, 927
SatI	GCNGC	2 cut(s)	15, 721
Sau3AI	GATC	3 cut(s)	84, 187, 930
Sau96I	GGNCC	3 cut(s)	243, 442, 487
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	446
SfaNI	GCATC	2 cut(s)	516, 689
SfcI	CTRYAG	3 cut(s)	15, 72, 369
SinI	GGWCC	3 cut(s)	243, 442, 487
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
Sse9I	AATT	7 cut(s)	141, 394, 409, 498, 581, 820, 983
SsiI	CCGC	1 cut(s)	723
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	444
StyI	CCWWGG	2 cut(s)	148, 651
TaaI	ACNGT	2 cut(s)	220, 308
TaiI	ACGT	3 cut(s)	441, 555, 779
TaqI	TCGA	2 cut(s)	49, 637
TasI	AATT	7 cut(s)	141, 394, 409, 498, 581, 820, 983
TatI	WGTACW	2 cut(s)	3, 131
TfiI	GAWTC	4 cut(s)	20, 98, 153, 659
Tru1I	TTAA	3 cut(s)	516, 606, 927
Tru9I	TTAA	3 cut(s)	516, 606, 927
TscAI	CASTG	2 cut(s)	353, 582
TseFI	GTSAC	1 cut(s)	824
TseI	GCWGC	2 cut(s)	14, 720
Tsp45I	GTSAC	1 cut(s)	824
TspDTI	ATGAA	6 cut(s)	153, 154, 214, 676, 825, 926
TspGWI	ACGGA	2 cut(s)	421, 932
TspRI	CASTG	2 cut(s)	353, 582
VpaK11BI	GGWCC	3 cut(s)	243, 442, 487
XapI	RAATTY	2 cut(s)	409, 498
XmiI	GTMKAC	1 cut(s)	637
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.