Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000333

Physical Location & Seq

Genomic Coordinates Forward (+)

33334348 .. 33336647

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008612

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAAAAAAAATTTGAATCAGAAACCTTTCAGTGACGAGAATCCACGAATTGAAGGAGGTCACCAGCGACGAGCTGAAGAAGAAGGTGCAGAGGAAGGCGGCGAGAATCCACGACGAGCTGAAGAAGAGGGCGCAGAGGAAGGCCCGGCGAGGATCCACGACAAGCTGAAGAAGATGGCACAGAGGAAGACGGCGACAATCCACGACGAGCTAAAGAAGAAGGCGCAGAGGAAGGCGGCGACAATCCACGAATTGAAGGAGGAGGTTGCCAAGGAGTTTGGCGTAGCACTGCAAGTTCAGCAGTTTTGGCTGTGGGCAAAGCCTGAAAACCGTACATATCCTGGATTGCCAATTGATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203

Pfam Domains

Protein Families

MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

121

Amino Acids

13.75

Weight (kDa)

6.93

Isoelectric Point (pI)

53.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca	FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica	MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica	Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis	pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis	RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata	RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora	Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa	Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha	Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana	Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	99, 236
AclWI	GGATC	3 cut(s)	148, 161, 350
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	3 cut(s)	96, 141, 188
AfaI	GTAC	1 cut(s)	334
AgsI	TTSAA	3 cut(s)	16, 53, 256
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	4 cut(s)	74, 119, 166, 211
AluI	AGCT	4 cut(s)	74, 119, 166, 211
AlwI	GGATC	3 cut(s)	148, 161, 350
AoxI	GGCC	1 cut(s)	142
ApoI	RAATTY	1 cut(s)	10
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	134, 226
AspS9I	GGNCC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	53
BamHI	GGATCC	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	194
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	146
BisI	GCNGC	2 cut(s)	100, 237
BlsI	GCNGC	2 cut(s)	101, 238
Bme1390I	CCNGG	2 cut(s)	146, 342
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	2 cut(s)	146, 342
BpiI	GAAGAC	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	275
BsgI	GTGCAG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	146
BsnI	GGCC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	153, 355
BspACI	CCGC	2 cut(s)	99, 236
BspANI	GGCC	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	155
BspPI	GGATC	3 cut(s)	148, 161, 350
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	2 cut(s)	153, 355
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	120
BstEII	GGTNACC	1 cut(s)	59
BstHHI	GCGC	2 cut(s)	134, 226
BstKTI	GATC	2 cut(s)	156, 358
BstMBI	GATC	2 cut(s)	153, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	298, 307
BstNI	CCWGG	1 cut(s)	342
BstPI	GGTNACC	1 cut(s)	59
BstSCI	CCNGG	2 cut(s)	144, 340
BstV2I	GAAGAC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	144
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	2 cut(s)	37, 287
CfoI	GCGC	2 cut(s)	134, 226
Cfr13I	GGNCC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	1 cut(s)	360
CviJI	RGCY	7 cut(s)	74, 119, 144, 166, 211, 310, 322
CviKI_1	RGCY	7 cut(s)	74, 119, 144, 166, 211, 310, 322
CviQI	GTAC	1 cut(s)	333
DpnI	GATC	2 cut(s)	155, 357
DpnII	GATC	2 cut(s)	153, 355
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	270
Eco57I	CTGAAG	3 cut(s)	96, 141, 188
Eco91I	GGTNACC	1 cut(s)	59
EcoO65I	GGTNACC	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	1 cut(s)	363
FaiI	YATR	2 cut(s)	337, 361
FatI	CATG	1 cut(s)	359
Fnu4HI	GCNGC	2 cut(s)	100, 237
Fsp4HI	GCNGC	2 cut(s)	100, 237
GlaI	GCGC	2 cut(s)	133, 225
GluI	GCNGC	2 cut(s)	100, 237
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	1 cut(s)	146
HhaI	GCGC	2 cut(s)	134, 226
Hin1II	CATG	1 cut(s)	363
Hin6I	GCGC	2 cut(s)	132, 224
HinP1I	GCGC	2 cut(s)	132, 224
HinfI	GANTC	3 cut(s)	16, 40, 106
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	53
Hpy188I	TCNGA	1 cut(s)	21
Hpy99I	CGWCG	3 cut(s)	72, 117, 209
HpyAV	CCTTC	7 cut(s)	47, 77, 89, 134, 214, 226, 250
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	2 cut(s)	89, 292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	298, 307
Hsp92II	CATG	1 cut(s)	363
HspAI	GCGC	2 cut(s)	132, 224
Kzo9I	GATC	2 cut(s)	153, 355
LpnPI	CCDG	5 cut(s)	77, 159, 327, 336, 354
MaeIII	GTNAC	2 cut(s)	32, 59
MalI	GATC	2 cut(s)	155, 357
MboI	GATC	2 cut(s)	153, 355
MboII	GAAGA	8 cut(s)	89, 92, 134, 137, 181, 184, 199, 229
MfeI	CAATTG	1 cut(s)	351
MflI	RGATCY	1 cut(s)	153
MluCI	AATT	4 cut(s)	10, 48, 251, 351
MnlI	CCTC	9 cut(s)	50, 85, 121, 130, 144, 177, 222, 253, 256
MroXI	GAANNNNTTC	1 cut(s)	26
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	146, 342
MunI	CAATTG	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	2 cut(s)	298, 307
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	2 cut(s)	153, 355
NlaIII	CATG	1 cut(s)	363
NlaIV	GGNNCC	1 cut(s)	155
NmuCI	GTSAC	2 cut(s)	32, 59
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	3 cut(s)	16, 40, 106
PfoI	TCCNGGA	1 cut(s)	340
PkrI	GCNGC	2 cut(s)	101, 238
Psp6I	CCWGG	1 cut(s)	340
PspEI	GGTNACC	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	153
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SatI	GCNGC	2 cut(s)	100, 237
Sau3AI	GATC	2 cut(s)	153, 355
Sau96I	GGNCC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	146, 342
SetI	ASST	8 cut(s)	28, 61, 76, 88, 121, 168, 213, 267
Sse9I	AATT	4 cut(s)	10, 48, 251, 351
SsiI	CCGC	2 cut(s)	99, 236
StyD4I	CCNGG	2 cut(s)	144, 340
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	332
TasI	AATT	4 cut(s)	10, 48, 251, 351
TauI	GCSGC	2 cut(s)	102, 239
TfiI	GAWTC	3 cut(s)	16, 40, 106
TscAI	CASTG	2 cut(s)	37, 294
TseFI	GTSAC	2 cut(s)	32, 59
Tsp45I	GTSAC	2 cut(s)	32, 59
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	37, 294
XapI	RAATTY	1 cut(s)	10
XmnI	GAANNNNTTC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.