Ubiquitin carboxyl-terminal hydrolase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ribosomal_S28e | PF01200 | 4 - 64 | 1.2e-29 | Ribosomal protein S28e |
| UCH | PF00443 | 96 - 381 | 1.3e-44 | Ubiquitin carboxyl-terminal hydrolase |
| UCH_1 | PF13423 | 138 - 335 | 2.2e-08 | Ubiquitin carboxyl-terminal hydrolase |
| USP7_ICP0_bdg | PF12436 | 485 - 736 | 5.1e-78 | ICP0-binding domain of Ubiquitin-specific protease 7 |
| USP7_C2 | PF14533 | 746 - 956 | 2.9e-57 | Ubiquitin-specific protease C-terminal |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1956 |
| Acc16I | TGCGCA | 2 cut(s) | 194, 2133 |
| Acc36I | ACCTGC | 3 cut(s) | 2608, 2698, 2781 |
| AccB1I | GGYRCC | 1 cut(s) | 216 |
| AccII | CGCG | 1 cut(s) | 1008 |
| AciI | CCGC | 3 cut(s) | 220, 889, 2566 |
| AclWI | GGATC | 1 cut(s) | 2102 |
| AcsI | RAATTY | 3 cut(s) | 818, 1620, 2626 |
| AcuI | CTGAAG | 5 cut(s) | 282, 705, 731, 737, 2697 |
| AcyI | GRCGYC | 1 cut(s) | 1953 |
| AdeI | CACNNNGTG | 1 cut(s) | 2477 |
| AfaI | GTAC | 8 cut(s) | 496, 677, 1142, 1977, 2507, 2622, 2771, 2840 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 256, 844, 1411, 2617, 2848 |
| AflIII | ACRYGT | 1 cut(s) | 1006 |
| AjnI | CCWGG | 3 cut(s) | 1081, 1518, 2841 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1590, 1622 |
| Alw21I | GWGCWC | 2 cut(s) | 1584, 2363 |
| Alw26I | GTCTC | 1 cut(s) | 2591 |
| AlwI | GGATC | 1 cut(s) | 2102 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2842 |
| Ama87I | CYCGRG | 3 cut(s) | 164, 1299, 2765 |
| AoxI | GGCC | 6 cut(s) | 43, 965, 1269, 1470, 1610, 2278 |
| ApoI | RAATTY | 3 cut(s) | 818, 1620, 2626 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1325, 1357 |
| AseI | ATTAAT | 2 cut(s) | 1764, 2379 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 107 |
| AspLEI | GCGC | 2 cut(s) | 195, 2134 |
| AsuC2I | CCSGG | 1 cut(s) | 1148 |
| AsuHPI | GGTGA | 7 cut(s) | 43, 158, 677, 858, 1067, 2341, 2675 |
| AsuII | TTCGAA | 1 cut(s) | 1378 |
| AvaI | CYCGRG | 3 cut(s) | 164, 1299, 2765 |
| AvaII | GGWCC | 7 cut(s) | 131, 241, 1309, 1354, 1860, 2209, 2710 |
| AxyI | CCTNAGG | 1 cut(s) | 1208 |
| BanI | GGYRCC | 1 cut(s) | 216 |
| BanII | GRGCYC | 1 cut(s) | 1584 |
| BbsI | GAAGAC | 1 cut(s) | 2549 |
| Bbv12I | GWGCWC | 2 cut(s) | 1584, 2363 |
| BbvCI | CCTCAGC | 1 cut(s) | 245 |
| BccI | CCATC | 4 cut(s) | 387, 1281, 1883, 2177 |
| BciT130I | CCWGG | 3 cut(s) | 1083, 1520, 2843 |
| BciVI | GTATCC | 2 cut(s) | 391, 1431 |
| BclI | TGATCA | 2 cut(s) | 97, 979 |
| BcnI | CCSGG | 1 cut(s) | 1148 |
| BcoDI | GTCTC | 1 cut(s) | 2591 |
| BfaI | CTAG | 2 cut(s) | 57, 1313 |
| BfmI | CTRYAG | 1 cut(s) | 2774 |
| BfuAI | ACCTGC | 3 cut(s) | 2608, 2698, 2781 |
| BfuI | GTATCC | 2 cut(s) | 391, 1431 |
| BglII | AGATCT | 2 cut(s) | 2454, 2463 |
| BisI | GCNGC | 1 cut(s) | 220 |
| BlsI | GCNGC | 1 cut(s) | 221 |
| BmcAI | AGTACT | 1 cut(s) | 2507 |
| Bme1390I | CCNGG | 4 cut(s) | 1083, 1148, 1520, 2843 |
| Bme18I | GGWCC | 7 cut(s) | 131, 241, 1309, 1354, 1860, 2209, 2710 |
| BmeT110I | CYCGRG | 3 cut(s) | 164, 1299, 2765 |
| BmiI | GGNNCC | 5 cut(s) | 132, 218, 893, 2637, 2712 |
| BmrFI | CCNGG | 4 cut(s) | 1083, 1148, 1520, 2843 |
| BmrI | ACTGGG | 1 cut(s) | 60 |
| BmsI | GCATC | 7 cut(s) | 200, 315, 552, 694, 1056, 1565, 2604 |
| BmuI | ACTGGG | 1 cut(s) | 60 |
| BpiI | GAAGAC | 1 cut(s) | 2549 |
| BpmI | CTGGAG | 2 cut(s) | 575, 723 |
| Bpu10I | CCTNAGC | 1 cut(s) | 245 |
| Bpu14I | TTCGAA | 1 cut(s) | 1378 |
| BpuEI | CTTGAG | 5 cut(s) | 57, 482, 680, 1568, 2456 |
| BpuMI | CCSGG | 1 cut(s) | 1148 |
| BsaAI | YACGTR | 1 cut(s) | 402 |
| BsaBI | GATNNNNATC | 1 cut(s) | 102 |
| BsaHI | GRCGYC | 1 cut(s) | 1953 |
| BsaJI | CCNNGG | 4 cut(s) | 251, 1518, 1647, 2842 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 256, 844, 1411, 2617, 2848 |
| Bse1I | ACTGG | 8 cut(s) | 55, 134, 740, 1442, 2503, 2513, 2796, 2918 |
| Bse21I | CCTNAGG | 1 cut(s) | 1208 |
| Bse3DI | GCAATG | 1 cut(s) | 2513 |
| Bse8I | GATNNNNATC | 1 cut(s) | 102 |
| BseBI | CCWGG | 3 cut(s) | 1083, 1520, 2843 |
| BseDI | CCNNGG | 4 cut(s) | 251, 1518, 1647, 2842 |
| BseJI | GATNNNNATC | 1 cut(s) | 102 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 256, 844, 1411, 2617, 2848 |
| BseMI | GCAATG | 1 cut(s) | 2513 |
| BseMII | CTCAG | 4 cut(s) | 162, 259, 273, 1677 |
| BseNI | ACTGG | 8 cut(s) | 55, 134, 740, 1442, 2503, 2513, 2796, 2918 |
| BseRI | GAGGAG | 6 cut(s) | 220, 1250, 1267, 2196, 2540, 2824 |
| BsgI | GTGCAG | 3 cut(s) | 449, 2541, 2586 |
| Bsh1236I | CGCG | 1 cut(s) | 1008 |
| BshFI | GGCC | 6 cut(s) | 45, 967, 1271, 1472, 1612, 2280 |
| BshNI | GGYRCC | 1 cut(s) | 216 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1584, 2363 |
| BsiHKCI | CYCGRG | 3 cut(s) | 164, 1299, 2765 |
| BsiSI | CCGG | 3 cut(s) | 46, 1147, 1613 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 256, 844, 1411, 2617, 2848 |
| BsmAI | GTCTC | 1 cut(s) | 2591 |
| BsmI | GAATGC | 2 cut(s) | 545, 2744 |
| BsnI | GGCC | 6 cut(s) | 45, 967, 1271, 1472, 1612, 2280 |
| BsoBI | CYCGRG | 3 cut(s) | 164, 1299, 2765 |
| Bsp119I | TTCGAA | 1 cut(s) | 1378 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1584, 2363 |
| Bsp1407I | TGTACA | 2 cut(s) | 1140, 1975 |
| Bsp143I | GATC | 8 cut(s) | 97, 586, 808, 979, 2107, 2454, 2463, 2876 |
| Bsp19I | CCATGG | 1 cut(s) | 251 |
| BspACI | CCGC | 3 cut(s) | 220, 889, 2566 |
| BspANI | GGCC | 6 cut(s) | 45, 967, 1271, 1472, 1612, 2280 |
| BspCNI | CTCAG | 4 cut(s) | 163, 258, 274, 1678 |
| BspFNI | CGCG | 1 cut(s) | 1008 |
| BspHI | TCATGA | 3 cut(s) | 114, 2560, 2656 |
| BspLI | GGNNCC | 5 cut(s) | 132, 218, 893, 2637, 2712 |
| BspMAI | CTGCAG | 1 cut(s) | 2778 |
| BspMI | ACCTGC | 3 cut(s) | 2608, 2698, 2781 |
| BspPI | GGATC | 1 cut(s) | 2102 |
| BspQI | GCTCTTC | 1 cut(s) | 324 |
| BspT104I | TTCGAA | 1 cut(s) | 1378 |
| BspT107I | GGYRCC | 1 cut(s) | 216 |
| BsrDI | GCAATG | 1 cut(s) | 2513 |
| BsrGI | TGTACA | 2 cut(s) | 1140, 1975 |
| BsrI | ACTGG | 8 cut(s) | 55, 134, 740, 1442, 2503, 2513, 2796, 2918 |
| BssECI | CCNNGG | 4 cut(s) | 251, 1518, 1647, 2842 |
| BssMI | GATC | 8 cut(s) | 97, 586, 808, 979, 2107, 2454, 2463, 2876 |
| BssNI | GRCGYC | 1 cut(s) | 1953 |
| BssT1I | CCWWGG | 2 cut(s) | 251, 1647 |
| Bst2UI | CCWGG | 3 cut(s) | 1083, 1520, 2843 |
| Bst6I | CTCTTC | 7 cut(s) | 324, 831, 909, 1022, 1056, 2535, 2715 |
| BstACI | GRCGYC | 1 cut(s) | 1953 |
| BstAUI | TGTACA | 2 cut(s) | 1140, 1975 |
| BstBAI | YACGTR | 1 cut(s) | 402 |
| BstBI | TTCGAA | 1 cut(s) | 1378 |
| BstC8I | GCNNGC | 5 cut(s) | 21, 935, 2520, 2689, 2856 |
| BstDEI | CTNAG | 8 cut(s) | 171, 245, 282, 708, 916, 1208, 1686, 2871 |
| BstDSI | CCRYGG | 1 cut(s) | 251 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1409 |
| BstFNI | CGCG | 1 cut(s) | 1008 |
| BstHHI | GCGC | 2 cut(s) | 195, 2134 |
| BstKTI | GATC | 8 cut(s) | 100, 589, 811, 982, 2110, 2457, 2466, 2879 |
| BstMAI | GTCTC | 1 cut(s) | 2591 |
| BstMBI | GATC | 8 cut(s) | 97, 586, 808, 979, 2107, 2454, 2463, 2876 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 219, 1453, 1781, 2272, 2864 |
| BstNI | CCWGG | 3 cut(s) | 1083, 1520, 2843 |
| BstNSI | RCATGY | 4 cut(s) | 23, 295, 1135, 2858 |
| BstSCI | CCNGG | 4 cut(s) | 1081, 1146, 1518, 2841 |
| BstSFI | CTRYAG | 1 cut(s) | 2774 |
| BstSNI | TACGTA | 1 cut(s) | 402 |
| BstUI | CGCG | 1 cut(s) | 1008 |
| BstV2I | GAAGAC | 1 cut(s) | 2549 |
| BstX2I | RGATCY | 2 cut(s) | 2454, 2463 |
| BstYI | RGATCY | 2 cut(s) | 2454, 2463 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1208 |
| BsuI | GTATCC | 2 cut(s) | 391, 1431 |
| BsuRI | GGCC | 6 cut(s) | 45, 967, 1271, 1472, 1612, 2280 |
| BtgI | CCRYGG | 1 cut(s) | 251 |
| BtsI | GCAGTG | 2 cut(s) | 364, 2127 |
| BtsIMutI | CAGTG | 9 cut(s) | 18, 141, 364, 989, 1159, 1449, 2127, 2361, 2482 |
| BveI | ACCTGC | 3 cut(s) | 2608, 2698, 2781 |
| Cac8I | GCNNGC | 5 cut(s) | 21, 935, 2520, 2689, 2856 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2842 |
| CciI | TCATGA | 3 cut(s) | 114, 2560, 2656 |
| CfoI | GCGC | 2 cut(s) | 195, 2134 |
| Csp6I | GTAC | 8 cut(s) | 495, 676, 1141, 1976, 2506, 2621, 2770, 2839 |
| CviQI | GTAC | 8 cut(s) | 495, 676, 1141, 1976, 2506, 2621, 2770, 2839 |
| DdeI | CTNAG | 8 cut(s) | 171, 245, 282, 708, 916, 1208, 1686, 2871 |
| DpnI | GATC | 8 cut(s) | 99, 588, 810, 981, 2109, 2456, 2465, 2878 |
| DpnII | GATC | 8 cut(s) | 97, 586, 808, 979, 2107, 2454, 2463, 2876 |
| DraIII | CACNNNGTG | 1 cut(s) | 2477 |
| Eam1104I | CTCTTC | 7 cut(s) | 324, 831, 909, 1022, 1056, 2535, 2715 |
| EarI | CTCTTC | 7 cut(s) | 324, 831, 909, 1022, 1056, 2535, 2715 |
| Ecl136II | GAGCTC | 1 cut(s) | 1582 |
| Eco105I | TACGTA | 1 cut(s) | 402 |
| Eco130I | CCWWGG | 2 cut(s) | 251, 1647 |
| Eco147I | AGGCCT | 1 cut(s) | 2280 |
| Eco24I | GRGCYC | 1 cut(s) | 1584 |
| Eco32I | GATATC | 1 cut(s) | 151 |
| Eco47I | GGWCC | 7 cut(s) | 131, 241, 1309, 1354, 1860, 2209, 2710 |
| Eco53kI | GAGCTC | 1 cut(s) | 1582 |
| Eco57I | CTGAAG | 5 cut(s) | 282, 705, 731, 737, 2697 |
| Eco81I | CCTNAGG | 1 cut(s) | 1208 |
| Eco88I | CYCGRG | 3 cut(s) | 164, 1299, 2765 |
| EcoICRI | GAGCTC | 1 cut(s) | 1582 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1409 |
| EcoO109I | RGGNCCY | 4 cut(s) | 241, 1309, 1860, 2710 |
| EcoRII | CCWGG | 3 cut(s) | 1081, 1518, 2841 |
| EcoRV | GATATC | 1 cut(s) | 151 |
| EcoT14I | CCWWGG | 2 cut(s) | 251, 1647 |
| EcoT22I | ATGCAT | 1 cut(s) | 545 |
| EcoT38I | GRGCYC | 1 cut(s) | 1584 |
| ErhI | CCWWGG | 2 cut(s) | 251, 1647 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 295, 327, 1590, 1622 |
| FauNDI | CATATG | 3 cut(s) | 270, 2881, 2908 |
| FbaI | TGATCA | 2 cut(s) | 97, 979 |
| Fnu4HI | GCNGC | 1 cut(s) | 220 |
| FriOI | GRGCYC | 1 cut(s) | 1584 |
| Fsp4HI | GCNGC | 1 cut(s) | 220 |
| FspBI | CTAG | 2 cut(s) | 57, 1313 |
| FspI | TGCGCA | 2 cut(s) | 194, 2133 |
| GlaI | GCGC | 2 cut(s) | 194, 2133 |
| GluI | GCNGC | 1 cut(s) | 220 |
| GsuI | CTGGAG | 2 cut(s) | 575, 723 |
| HaeIII | GGCC | 6 cut(s) | 45, 967, 1271, 1472, 1612, 2280 |
| HapII | CCGG | 3 cut(s) | 46, 1147, 1613 |
| HhaI | GCGC | 2 cut(s) | 195, 2134 |
| Hin1I | GRCGYC | 1 cut(s) | 1953 |
| Hin6I | GCGC | 2 cut(s) | 193, 2132 |
| HinP1I | GCGC | 2 cut(s) | 193, 2132 |
| HindIII | AAGCTT | 3 cut(s) | 338, 458, 1673 |
| HpaII | CCGG | 3 cut(s) | 46, 1147, 1613 |
| HphI | GGTGA | 7 cut(s) | 43, 158, 677, 858, 1067, 2341, 2675 |
| Hpy166II | GTNNAC | 9 cut(s) | 553, 622, 1110, 1141, 1354, 1844, 1978, 2212, 2581 |
| Hpy8I | GTNNAC | 9 cut(s) | 553, 622, 1110, 1141, 1354, 1844, 1978, 2212, 2581 |
| HpyCH4IV | ACGT | 3 cut(s) | 401, 655, 1953 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 219, 1453, 1781, 2272, 2864 |
| HpyF3I | CTNAG | 8 cut(s) | 171, 245, 282, 708, 916, 1208, 1686, 2871 |
| HpySE526I | ACGT | 3 cut(s) | 401, 655, 1953 |
| Hsp92I | GRCGYC | 1 cut(s) | 1953 |
| HspAI | GCGC | 2 cut(s) | 193, 2132 |
| Ksp22I | TGATCA | 2 cut(s) | 97, 979 |
| Kzo9I | GATC | 8 cut(s) | 97, 586, 808, 979, 2107, 2454, 2463, 2876 |
| LguI | GCTCTTC | 1 cut(s) | 324 |
| LmnI | GCTCC | 5 cut(s) | 1789, 2825, 2833, 2851, 2872 |
| LweI | GCATC | 7 cut(s) | 200, 315, 552, 694, 1056, 1565, 2604 |
| MaeI | CTAG | 2 cut(s) | 57, 1313 |
| MaeII | ACGT | 3 cut(s) | 401, 655, 1953 |
| MaeIII | GTNAC | 6 cut(s) | 67, 665, 864, 1009, 1154, 2900 |
| MalI | GATC | 8 cut(s) | 99, 588, 810, 981, 2109, 2456, 2465, 2878 |
| MboI | GATC | 8 cut(s) | 97, 586, 808, 979, 2107, 2454, 2463, 2876 |
| MfeI | CAATTG | 1 cut(s) | 1544 |
| MflI | RGATCY | 2 cut(s) | 2454, 2463 |
| MhlI | GDGCHC | 2 cut(s) | 1584, 2363 |
| MluI | ACGCGT | 1 cut(s) | 1006 |
| MlyI | GAGTC | 5 cut(s) | 90, 176, 584, 2118, 2774 |
| MmeI | TCCRAC | 3 cut(s) | 1519, 2452, 2829 |
| Mph1103I | ATGCAT | 1 cut(s) | 545 |
| MroXI | GAANNNNTTC | 1 cut(s) | 107 |
| MslI | CAYNNNNRTG | 7 cut(s) | 548, 927, 951, 1136, 2061, 2661, 2907 |
| MspI | CCGG | 3 cut(s) | 46, 1147, 1613 |
| MspR9I | CCNGG | 4 cut(s) | 1083, 1148, 1520, 2843 |
| MunI | CAATTG | 1 cut(s) | 1544 |
| Mva1269I | GAATGC | 2 cut(s) | 545, 2744 |
| MvaI | CCWGG | 3 cut(s) | 1083, 1520, 2843 |
| MvnI | CGCG | 1 cut(s) | 1008 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 219, 1453, 1781, 2272, 2864 |
| NciI | CCSGG | 1 cut(s) | 1148 |
| NcoI | CCATGG | 1 cut(s) | 251 |
| NdeI | CATATG | 3 cut(s) | 270, 2881, 2908 |
| NdeII | GATC | 8 cut(s) | 97, 586, 808, 979, 2107, 2454, 2463, 2876 |
| NlaIV | GGNNCC | 5 cut(s) | 132, 218, 893, 2637, 2712 |
| NmuCI | GTSAC | 5 cut(s) | 665, 864, 1009, 1154, 2900 |
| NsbI | TGCGCA | 2 cut(s) | 194, 2133 |
| NsiI | ATGCAT | 1 cut(s) | 545 |
| NspI | RCATGY | 4 cut(s) | 23, 295, 1135, 2858 |
| NspV | TTCGAA | 1 cut(s) | 1378 |
| PaeI | GCATGC | 2 cut(s) | 23, 2858 |
| PaeR7I | CTCGAG | 2 cut(s) | 164, 1299 |
| PagI | TCATGA | 3 cut(s) | 114, 2560, 2656 |
| PceI | AGGCCT | 1 cut(s) | 2280 |
| PciSI | GCTCTTC | 1 cut(s) | 324 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 407, 1375, 1501 |
| PctI | GAATGC | 2 cut(s) | 545, 2744 |
| PdmI | GAANNNNTTC | 1 cut(s) | 107 |
| PfeI | GAWTC | 9 cut(s) | 5, 103, 407, 872, 1380, 1458, 2332, 2530, 2572 |
| PflFI | GACNNNGTC | 1 cut(s) | 52 |
| PfoI | TCCNGGA | 1 cut(s) | 1146 |
| PkrI | GCNGC | 1 cut(s) | 221 |
| PleI | GAGTC | 5 cut(s) | 89, 175, 583, 2118, 2774 |
| PpsI | GAGTC | 5 cut(s) | 89, 175, 583, 2118, 2774 |
| Ppu21I | YACGTR | 1 cut(s) | 402 |
| PpuMI | RGGWCCY | 4 cut(s) | 241, 1309, 1860, 2710 |
| PshBI | ATTAAT | 2 cut(s) | 1764, 2379 |
| Psp124BI | GAGCTC | 1 cut(s) | 1584 |
| Psp5II | RGGWCCY | 4 cut(s) | 241, 1309, 1860, 2710 |
| Psp6I | CCWGG | 3 cut(s) | 1081, 1518, 2841 |
| PspGI | CCWGG | 3 cut(s) | 1081, 1518, 2841 |
| PspN4I | GGNNCC | 5 cut(s) | 132, 218, 893, 2637, 2712 |
| PspPPI | RGGWCCY | 4 cut(s) | 241, 1309, 1860, 2710 |
| PspXI | VCTCGAGB | 1 cut(s) | 164 |
| PstI | CTGCAG | 1 cut(s) | 2778 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2842 |
| PsuI | RGATCY | 2 cut(s) | 2454, 2463 |
| PsyI | GACNNNGTC | 1 cut(s) | 52 |
| RsaI | GTAC | 8 cut(s) | 496, 677, 1142, 1977, 2507, 2622, 2771, 2840 |
| RsaNI | GTAC | 8 cut(s) | 495, 676, 1141, 1976, 2506, 2621, 2770, 2839 |
| RseI | CAYNNNNRTG | 7 cut(s) | 548, 927, 951, 1136, 2061, 2661, 2907 |
| SacI | GAGCTC | 1 cut(s) | 1584 |
| SapI | GCTCTTC | 1 cut(s) | 324 |
| SatI | GCNGC | 1 cut(s) | 220 |
| Sau3AI | GATC | 8 cut(s) | 97, 586, 808, 979, 2107, 2454, 2463, 2876 |
| SbfI | CCTGCAGG | 1 cut(s) | 2778 |
| ScaI | AGTACT | 1 cut(s) | 2507 |
| SchI | GAGTC | 5 cut(s) | 90, 176, 584, 2118, 2774 |
| ScrFI | CCNGG | 4 cut(s) | 1083, 1148, 1520, 2843 |
| SdaI | CCTGCAGG | 1 cut(s) | 2778 |
| SduI | GDGCHC | 2 cut(s) | 1584, 2363 |
| SfaNI | GCATC | 7 cut(s) | 200, 315, 552, 694, 1056, 1565, 2604 |
| SfcI | CTRYAG | 1 cut(s) | 2774 |
| Sfr274I | CTCGAG | 2 cut(s) | 164, 1299 |
| SfuI | TTCGAA | 1 cut(s) | 1378 |
| SinI | GGWCC | 7 cut(s) | 131, 241, 1309, 1354, 1860, 2209, 2710 |
| SlaI | CTCGAG | 2 cut(s) | 164, 1299 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 548, 927, 951, 1136, 2061, 2661, 2907 |
| SmlI | CTYRAG | 7 cut(s) | 72, 164, 461, 659, 1299, 1583, 2435 |
| SmoI | CTYRAG | 7 cut(s) | 72, 164, 461, 659, 1299, 1583, 2435 |
| SnaBI | TACGTA | 1 cut(s) | 402 |
| SphI | GCATGC | 2 cut(s) | 23, 2858 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2778 |
| SseBI | AGGCCT | 1 cut(s) | 2280 |
| SsiI | CCGC | 3 cut(s) | 220, 889, 2566 |
| SspMI | CTAG | 2 cut(s) | 57, 1313 |
| SstI | GAGCTC | 1 cut(s) | 1584 |
| StuI | AGGCCT | 1 cut(s) | 2280 |
| StyD4I | CCNGG | 4 cut(s) | 1081, 1146, 1518, 2841 |
| StyI | CCWWGG | 2 cut(s) | 251, 1647 |
| TaiI | ACGT | 3 cut(s) | 404, 658, 1956 |
| TaqI | TCGA | 7 cut(s) | 165, 236, 1121, 1300, 1378, 1870, 2179 |
| TatI | WGTACW | 3 cut(s) | 1140, 1975, 2505 |
| TauI | GCSGC | 1 cut(s) | 222 |
| TfiI | GAWTC | 9 cut(s) | 5, 103, 407, 872, 1380, 1458, 2332, 2530, 2572 |
| TscAI | CASTG | 9 cut(s) | 18, 141, 364, 989, 1159, 1449, 2134, 2368, 2482 |
| TseFI | GTSAC | 5 cut(s) | 665, 864, 1009, 1154, 2900 |
| Tsp45I | GTSAC | 5 cut(s) | 665, 864, 1009, 1154, 2900 |
| TspGWI | ACGGA | 1 cut(s) | 241 |
| TspRI | CASTG | 9 cut(s) | 18, 141, 364, 989, 1159, 1449, 2134, 2368, 2482 |
| Tth111I | GACNNNGTC | 1 cut(s) | 52 |
| VpaK11BI | GGWCC | 7 cut(s) | 131, 241, 1309, 1354, 1860, 2209, 2710 |
| VspI | ATTAAT | 2 cut(s) | 1764, 2379 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1409 |
| XapI | RAATTY | 3 cut(s) | 818, 1620, 2626 |
| XceI | RCATGY | 4 cut(s) | 23, 295, 1135, 2858 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1079 |
| XhoI | CTCGAG | 2 cut(s) | 164, 1299 |
| XmnI | GAANNNNTTC | 1 cut(s) | 107 |
| XspI | CTAG | 2 cut(s) | 57, 1313 |
| ZraI | GACGTC | 1 cut(s) | 1954 |
| ZrmI | AGTACT | 1 cut(s) | 2507 |
| Zsp2I | ATGCAT | 1 cut(s) | 545 |