Rroxscaffold_5G00364030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000333
Physical Location & Seq
Forward (+)
45330535 .. 45333209
2675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364030.1

Sequence Viewer

Length: 402 bp
ATGTCCCACGCCTTCTCCTCTTCCTTGCGCGGTGCCGGTGGTAGCTTTTCGCCGGCTCTTGAGCCGTACACGGCGGTGGAACACGAGGCCCGGTTTGAGCTCGTTTTGGTTCCAAACTTGATATCTCAAGCTACCGGCCATCAATCCTCACCAAACTTCATCATCGAGCTCGCCTCAACCTCCCGAAGCTCCCGAAGCAACCTTGCGCGGCGAAGTGGTCCGTGGGCATGTGGCGGCGGCTGCAAGTCAACCCCCCCCGACTTAAATCGAACGAAACTTTCGATCCGGATATCTCGAGCCGAGAAGAACATGATGAGGTTAGATGACAACCGGAACTGCACATCCACACAACTGCGAGTGTTAAAAATAACTGGCTTTTGTGGTAGTGCCAAAATGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.41

Weight (kDa)

10.15

Isoelectric Point (pI)

62.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 32
AccII CGCG 2 cut(s) 30, 208
AccIII TCCGGA 1 cut(s) 285
AciI CCGC 5 cut(s) 30, 74, 208, 234, 237
AclWI GGATC 1 cut(s) 277
AcoI YGGCCR 1 cut(s) 136
AfaI GTAC 1 cut(s) 68
AleI CACNNNNGTG 1 cut(s) 74
AloI GAACNNNNNNTCC 2 cut(s) 326, 358
AluBI AGCT 5 cut(s) 45, 100, 131, 169, 189
AluI AGCT 5 cut(s) 45, 100, 131, 169, 189
Alw21I GWGCWC 2 cut(s) 102, 171
AlwI GGATC 1 cut(s) 277
Ama87I CYCGRG 1 cut(s) 294
Aor13HI TCCGGA 1 cut(s) 285
AoxI GGCC 2 cut(s) 87, 136
ApeKI GCWGC 1 cut(s) 240
AspLEI GCGC 2 cut(s) 30, 208
AspS9I GGNCC 2 cut(s) 88, 218
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 141
AvaI CYCGRG 1 cut(s) 294
AvaII GGWCC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 32
BanII GRGCYC 2 cut(s) 102, 171
BauI CACGAG 1 cut(s) 83
Bbv12I GWGCWC 2 cut(s) 102, 171
BbvI GCAGC 1 cut(s) 227
BccI CCATC 1 cut(s) 147
BceAI ACGGC 2 cut(s) 49, 87
BcnI CCSGG 1 cut(s) 91
BisI GCNGC 4 cut(s) 209, 235, 238, 241
BlsI GCNGC 4 cut(s) 210, 236, 239, 242
Bme1390I CCNGG 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 218
BmeT110I CYCGRG 1 cut(s) 294
BmgT120I GGNCC 2 cut(s) 88, 218
BmiI GGNNCC 2 cut(s) 34, 111
BmrFI CCNGG 1 cut(s) 91
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpuEI CTTGAG 2 cut(s) 80, 111
BpuMI CCSGG 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 221
BsaWI WCCGGW 2 cut(s) 285, 330
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bse118I RCCGGY 3 cut(s) 35, 52, 134
Bse1I ACTGG 1 cut(s) 376
BseAI TCCGGA 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 1 cut(s) 7
BseXI GCAGC 1 cut(s) 227
BsgI GTGCAG 1 cut(s) 322
Bsh1236I CGCG 2 cut(s) 30, 208
BshFI GGCC 2 cut(s) 89, 138
BshNI GGYRCC 1 cut(s) 32
BsiHKAI GWGCWC 2 cut(s) 102, 171
BsiHKCI CYCGRG 1 cut(s) 294
BsiSI CCGG 6 cut(s) 36, 53, 91, 135, 286, 331
BsnI GGCC 2 cut(s) 89, 138
BsoBI CYCGRG 1 cut(s) 294
Bsp1286I GDGCHC 2 cut(s) 102, 171
Bsp13I TCCGGA 1 cut(s) 285
Bsp143I GATC 1 cut(s) 282
BspACI CCGC 5 cut(s) 30, 74, 208, 234, 237
BspANI GGCC 2 cut(s) 89, 138
BspEI TCCGGA 1 cut(s) 285
BspFNI CGCG 2 cut(s) 30, 208
BspLI GGNNCC 2 cut(s) 34, 111
BspPI GGATC 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 32
BsrFI RCCGGY 3 cut(s) 35, 52, 134
BsrI ACTGG 1 cut(s) 376
BssAI RCCGGY 3 cut(s) 35, 52, 134
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 1 cut(s) 282
BssSI CACGAG 1 cut(s) 83
Bst2BI CACGAG 1 cut(s) 83
Bst6I CTCTTC 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 54, 171
BstDSI CCRYGG 1 cut(s) 221
BstF5I GGATG 1 cut(s) 341
BstFNI CGCG 2 cut(s) 30, 208
BstHHI GCGC 2 cut(s) 30, 208
BstKTI GATC 1 cut(s) 285
BstMBI GATC 1 cut(s) 282
BstMWI GCNNNNNNNGC 2 cut(s) 195, 240
BstNSI RCATGY 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 89
BstUI CGCG 2 cut(s) 30, 208
BstV1I GCAGC 1 cut(s) 227
BsuRI GGCC 2 cut(s) 89, 138
BtgI CCRYGG 1 cut(s) 221
BtsCI GGATG 1 cut(s) 341
Cac8I GCNNGC 2 cut(s) 54, 171
CfoI GCGC 2 cut(s) 30, 208
Cfr10I RCCGGY 3 cut(s) 35, 52, 134
Cfr13I GGNCC 2 cut(s) 88, 218
Csp6I GTAC 1 cut(s) 67
CviAII CATG 2 cut(s) 228, 310
CviQI GTAC 1 cut(s) 67
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
EaeI YGGCCR 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Ecl136II GAGCTC 2 cut(s) 100, 169
Eco24I GRGCYC 2 cut(s) 102, 171
Eco32I GATATC 2 cut(s) 123, 291
Eco47I GGWCC 1 cut(s) 218
Eco53kI GAGCTC 2 cut(s) 100, 169
Eco88I CYCGRG 1 cut(s) 294
EcoICRI GAGCTC 2 cut(s) 100, 169
EcoRV GATATC 2 cut(s) 123, 291
EcoT38I GRGCYC 2 cut(s) 102, 171
FaeI CATG 2 cut(s) 231, 313
FaiI YATR 2 cut(s) 229, 311
FatI CATG 2 cut(s) 227, 309
Fnu4HI GCNGC 4 cut(s) 209, 235, 238, 241
FokI GGATG 1 cut(s) 328
FriOI GRGCYC 2 cut(s) 102, 171
Fsp4HI GCNGC 4 cut(s) 209, 235, 238, 241
GlaI GCGC 2 cut(s) 29, 207
GluI GCNGC 4 cut(s) 209, 235, 238, 241
HaeIII GGCC 2 cut(s) 89, 138
HapII CCGG 6 cut(s) 36, 53, 91, 135, 286, 331
HhaI GCGC 2 cut(s) 30, 208
Hin1II CATG 2 cut(s) 231, 313
Hin6I GCGC 2 cut(s) 28, 206
HinP1I GCGC 2 cut(s) 28, 206
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HpaII CCGG 6 cut(s) 36, 53, 91, 135, 286, 331
HphI GGTGA 1 cut(s) 141
Hpy166II GTNNAC 2 cut(s) 69, 249
Hpy188III TCNNGA 5 cut(s) 59, 183, 192, 286, 294
Hpy8I GTNNAC 2 cut(s) 69, 249
HpyAV CCTTC 1 cut(s) 22
HpyCH4V TGCA 2 cut(s) 243, 339
HpyF10VI GCNNNNNNNGC 2 cut(s) 195, 240
Hsp92II CATG 2 cut(s) 231, 313
HspAI GCGC 2 cut(s) 28, 206
Kpn2I TCCGGA 1 cut(s) 285
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Kzo9I GATC 1 cut(s) 282
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 7 cut(s) 49, 66, 104, 148, 299, 344, 357
Lsp1109I GCAGC 1 cut(s) 227
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 2 cut(s) 12, 316
MhlI GDGCHC 2 cut(s) 102, 171
MnlI CCTC 6 cut(s) 28, 79, 157, 184, 190, 309
MroI TCCGGA 1 cut(s) 285
MroNI GCCGGC 1 cut(s) 52
MseI TTAA 2 cut(s) 263, 362
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 6 cut(s) 36, 53, 91, 135, 286, 331
MspR9I CCNGG 1 cut(s) 91
MvnI CGCG 2 cut(s) 30, 208
MwoI GCNNNNNNNGC 2 cut(s) 195, 240
NaeI GCCGGC 1 cut(s) 54
NciI CCSGG 1 cut(s) 91
NdeII GATC 1 cut(s) 282
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 2 cut(s) 231, 313
NlaIV GGNNCC 2 cut(s) 34, 111
NmeAIII GCCGAG 1 cut(s) 325
NspI RCATGY 1 cut(s) 231
OliI CACNNNNGTG 1 cut(s) 74
PaeR7I CTCGAG 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PdiI GCCGGC 1 cut(s) 54
PkrI GCNGC 4 cut(s) 210, 236, 239, 242
Psp124BI GAGCTC 2 cut(s) 102, 171
PspN4I GGNNCC 2 cut(s) 34, 111
PspPI GGNCC 2 cut(s) 88, 218
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 74
SacI GAGCTC 2 cut(s) 102, 171
SaqAI TTAA 2 cut(s) 263, 362
SatI GCNGC 4 cut(s) 209, 235, 238, 241
Sau3AI GATC 1 cut(s) 282
Sau96I GGNCC 2 cut(s) 88, 218
ScrFI CCNGG 1 cut(s) 91
SduI GDGCHC 2 cut(s) 102, 171
SetI ASST 8 cut(s) 47, 102, 133, 171, 182, 191, 204, 320
Sfr274I CTCGAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 218
SlaI CTCGAG 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 3 cut(s) 59, 126, 294
SmoI CTYRAG 3 cut(s) 59, 126, 294
SsiI CCGC 5 cut(s) 30, 74, 208, 234, 237
SstI GAGCTC 2 cut(s) 102, 171
StyD4I CCNGG 1 cut(s) 89
TaqI TCGA 4 cut(s) 165, 268, 281, 295
TauI GCSGC 3 cut(s) 211, 237, 240
Tru1I TTAA 2 cut(s) 263, 362
Tru9I TTAA 2 cut(s) 263, 362
TseI GCWGC 1 cut(s) 240
TspDTI ATGAA 1 cut(s) 148
TspGWI ACGGA 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 218
XceI RCATGY 1 cut(s) 231
XhoI CTCGAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.