Rroxscaffold_1G00031970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000333
Physical Location & Seq
Reverse (-)
45375808 .. 45387427
11620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00031970.1

Sequence Viewer

Length: 504 bp
ATGAAGGAAGAGCAGCATCGGGCGAATTCCAGCTCGAGCTGTGCAGCTTCTCGGCCTCCTAGCGCCTTCCACGTCGATCGGAGGTCTGTGGAGGGAGATATGGCCATTGGAAGATTGAGAGGCGATTTCCGTCGTGCTCGGGCTGCAGCCCAGAAATTTTCTAGTACCATTACTCATGCGGCGAAAAAGATTGATGAACTTGGAGGTCTCGTTAGAGGGATGAAAGAAAAATTGTTCAAAGCAATGAGAAGAGGTTGTAATCGGTCTGTTAGTATAAAAAGTGACGATGCTAATCATGAAAACAAGGATGCGGAAATGTCGCAAATAACATTTCCGAGTACCATTACTCGGGGTGGCCGAAGACTGTCTTCCTCAATATTTGCCAAGAGTCTTCTCGGTATTTGTAGTACCATTACTCATGCGGCGAAAAAGATTGATGAACTTGGAGGTCTCGTTAGAGGGATGAAAGAAAAATTGTTCAAAGCAAGTGAGAGGAGGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.41

Weight (kDa)

10.51

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 179, 311, 422
AcoI YGGCCR 2 cut(s) 102, 355
AcsI RAATTY 2 cut(s) 25, 155
AfaI GTAC 3 cut(s) 166, 340, 409
AfiI CCNNNNNNNGG 1 cut(s) 348
AgsI TTSAA 2 cut(s) 238, 481
AjiI CACGTC 1 cut(s) 73
AluBI AGCT 3 cut(s) 33, 39, 47
AluI AGCT 3 cut(s) 33, 39, 47
Alw21I GWGCWC 1 cut(s) 139
Alw26I GTCTC 2 cut(s) 212, 455
Ama87I CYCGRG 3 cut(s) 34, 138, 348
AoxI GGCC 3 cut(s) 53, 102, 355
ApeKI GCWGC 4 cut(s) 13, 44, 143, 146
ApoI RAATTY 2 cut(s) 25, 155
AspLEI GCGC 1 cut(s) 65
AvaI CYCGRG 3 cut(s) 34, 138, 348
BalI TGGCCA 1 cut(s) 104
BbsI GAAGAC 3 cut(s) 360, 367, 383
Bbv12I GWGCWC 1 cut(s) 139
BbvI GCAGC 4 cut(s) 25, 56, 130, 158
BcoDI GTCTC 2 cut(s) 212, 455
BfaI CTAG 2 cut(s) 60, 162
BfmI CTRYAG 1 cut(s) 144
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 6 cut(s) 14, 45, 144, 147, 180, 423
BlsI GCNGC 6 cut(s) 15, 46, 145, 148, 181, 424
BmeT110I CYCGRG 3 cut(s) 34, 138, 348
BmgBI CACGTC 1 cut(s) 73
BmsI GCATC 3 cut(s) 25, 277, 298
BpiI GAAGAC 3 cut(s) 360, 367, 383
BsaBI GATNNNNATC 1 cut(s) 291
BsaI GGTCTC 2 cut(s) 212, 455
BsaXI ACNNNNNCTCC 4 cut(s) 195, 225, 438, 468
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse3DI GCAATG 1 cut(s) 249
Bse8I GATNNNNATC 1 cut(s) 291
BseGI GGATG 3 cut(s) 225, 313, 468
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMI GCAATG 1 cut(s) 249
BseXI GCAGC 4 cut(s) 25, 56, 130, 158
BsgI GTGCAG 1 cut(s) 63
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 3 cut(s) 55, 104, 357
BsiEI CGRYCG 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 139
BsiHKCI CYCGRG 3 cut(s) 34, 138, 348
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 2 cut(s) 212, 455
BsnI GGCC 3 cut(s) 55, 104, 357
Bso31I GGTCTC 2 cut(s) 212, 455
BsoBI CYCGRG 3 cut(s) 34, 138, 348
Bsp1286I GDGCHC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 3 cut(s) 179, 311, 422
BspANI GGCC 3 cut(s) 55, 104, 357
BspHI TCATGA 1 cut(s) 295
BspMAI CTGCAG 1 cut(s) 148
BspQI GCTCTTC 1 cut(s) 3
BspTNI GGTCTC 2 cut(s) 212, 455
BsrDI GCAATG 1 cut(s) 249
BssMI GATC 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 366
Bst6I CTCTTC 2 cut(s) 3, 244
BstF5I GGATG 3 cut(s) 225, 313, 468
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 2 cut(s) 212, 455
BstMBI GATC 1 cut(s) 76
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 4 cut(s) 25, 56, 130, 158
BstV2I GAAGAC 3 cut(s) 360, 367, 383
BsuRI GGCC 3 cut(s) 55, 104, 357
BtrI CACGTC 1 cut(s) 73
BtsCI GGATG 3 cut(s) 225, 313, 468
CciI TCATGA 1 cut(s) 295
CfoI GCGC 1 cut(s) 65
Csp6I GTAC 3 cut(s) 165, 339, 408
CviAII CATG 3 cut(s) 176, 296, 419
CviJI RGCY 8 cut(s) 33, 39, 47, 55, 104, 143, 149, 357
CviKI_1 RGCY 8 cut(s) 33, 39, 47, 55, 104, 143, 149, 357
CviQI GTAC 3 cut(s) 165, 339, 408
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
EaeI YGGCCR 2 cut(s) 102, 355
Eam1104I CTCTTC 2 cut(s) 3, 244
EarI CTCTTC 2 cut(s) 3, 244
Eco31I GGTCTC 2 cut(s) 212, 455
Eco88I CYCGRG 3 cut(s) 34, 138, 348
EcoRI GAATTC 1 cut(s) 25
FaeI CATG 3 cut(s) 179, 299, 422
FaiI YATR 5 cut(s) 101, 177, 275, 297, 420
FalI AAGNNNNNCTT 2 cut(s) 352, 384
FatI CATG 3 cut(s) 175, 295, 418
Fnu4HI GCNGC 6 cut(s) 14, 45, 144, 147, 180, 423
FokI GGATG 3 cut(s) 232, 320, 475
Fsp4HI GCNGC 6 cut(s) 14, 45, 144, 147, 180, 423
FspBI CTAG 2 cut(s) 60, 162
GlaI GCGC 1 cut(s) 64
GluI GCNGC 6 cut(s) 14, 45, 144, 147, 180, 423
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 3 cut(s) 55, 104, 357
HhaI GCGC 1 cut(s) 65
Hin1II CATG 3 cut(s) 179, 299, 422
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 1 cut(s) 388
Hpy188I TCNGA 2 cut(s) 81, 336
Hpy188III TCNNGA 1 cut(s) 296
Hpy99I CGWCG 2 cut(s) 77, 135
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 366
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 2 cut(s) 44, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 3 cut(s) 179, 299, 422
HspAI GCGC 1 cut(s) 63
Kzo9I GATC 1 cut(s) 76
LguI GCTCTTC 1 cut(s) 3
LpnPI CCDG 2 cut(s) 43, 164
Lsp1109I GCAGC 4 cut(s) 25, 56, 130, 158
LweI GCATC 3 cut(s) 25, 277, 298
MaeI CTAG 2 cut(s) 60, 162
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 281
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 6 cut(s) 20, 123, 261, 360, 372, 383
MhlI GDGCHC 1 cut(s) 139
MlsI TGGCCA 1 cut(s) 104
MluCI AATT 4 cut(s) 25, 155, 230, 473
MluNI TGGCCA 1 cut(s) 104
MlyI GAGTC 1 cut(s) 397
Mox20I TGGCCA 1 cut(s) 104
MscI TGGCCA 1 cut(s) 104
Msp20I TGGCCA 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeII GATC 1 cut(s) 76
NlaIII CATG 3 cut(s) 179, 299, 422
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 281
PaeR7I CTCGAG 1 cut(s) 34
PagI TCATGA 1 cut(s) 295
PciSI GCTCTTC 1 cut(s) 3
PcsI WCGNNNNNNNCGW 1 cut(s) 355
PkrI GCNGC 6 cut(s) 15, 46, 145, 148, 181, 424
Ple19I CGATCG 1 cut(s) 79
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
PspXI VCTCGAGB 1 cut(s) 34
PstI CTGCAG 1 cut(s) 148
PvuI CGATCG 1 cut(s) 79
RsaI GTAC 3 cut(s) 166, 340, 409
RsaNI GTAC 3 cut(s) 165, 339, 408
SapI GCTCTTC 1 cut(s) 3
SatI GCNGC 6 cut(s) 14, 45, 144, 147, 180, 423
Sau3AI GATC 1 cut(s) 76
SchI GAGTC 1 cut(s) 397
SduI GDGCHC 1 cut(s) 139
SetI ASST 9 cut(s) 35, 41, 49, 75, 86, 208, 256, 451, 500
SfaNI GCATC 3 cut(s) 25, 277, 298
SfcI CTRYAG 1 cut(s) 144
Sfr274I CTCGAG 1 cut(s) 34
SlaI CTCGAG 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 4 cut(s) 25, 155, 230, 473
SsiI CCGC 3 cut(s) 179, 311, 422
SspI AATATT 1 cut(s) 378
SspMI CTAG 2 cut(s) 60, 162
TaaI ACNGT 1 cut(s) 366
TaiI ACGT 1 cut(s) 75
TaqI TCGA 2 cut(s) 35, 75
TaqII GACCGA 1 cut(s) 252
TasI AATT 4 cut(s) 25, 155, 230, 473
TauI GCSGC 2 cut(s) 182, 425
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 4 cut(s) 13, 44, 143, 146
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 6 cut(s) 17, 210, 236, 312, 453, 479
TspGWI ACGGA 1 cut(s) 119
XapI RAATTY 2 cut(s) 25, 155
XhoI CTCGAG 1 cut(s) 34
XspI CTAG 2 cut(s) 60, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.