Rroxscaffold_3G00261320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000333
Physical Location & Seq
Forward (+)
55622875 .. 55623701
827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00261320.1

Sequence Viewer

Length: 486 bp
ATGCTACTGGGGCAGAACTATTCACTACCACCGGATCTTTGCTTCCACCTCGTTGGGTCGTGGTCACCAGATTTGTGGACTGTTGGCTTCACATTTTCAAGGCTCCCAATGGCTACAGGCCACGTCACCCGCCCACATGCATGCCACAACTTGACCAAATCCCCACTCCCACACGCTGCAGCCTTGTTTCCGCTAGAGGACAAGCGATTGCCATGCAATTTTGGGTCCTGGCGCATCTCCCCTCTCCTCTTCTTTTTGGGCCAGAGTGGCAACCTGGGTCACGGGCTCAGTCACCCTCCTACCCGAACTTGTGACCTGGGCTGCCCACTGTGCTCTTGCCCCAGATCCGGTGGAAGCTGCAATAGTGAGTTTCTGGTGTCCCAAGCTACAAAACTGACGTGGTGCCCGGGCAAAACTGAGCCCGGTGAACTTGCCCTTAGGATGAACGTTAGTATATACAGGGTTACACCAATAGACATGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.59

Weight (kDa)

8.43

Isoelectric Point (pI)

52.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 402
AciI CCGC 2 cut(s) 130, 191
AclI AACGTT 1 cut(s) 447
AclWI GGATC 2 cut(s) 42, 339
AfiI CCNNNNNNNGG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 1 cut(s) 99
AjiI CACGTC 2 cut(s) 124, 399
AjnI CCWGG 3 cut(s) 227, 273, 315
AluBI AGCT 2 cut(s) 357, 386
AluI AGCT 2 cut(s) 357, 386
Alw21I GWGCWC 1 cut(s) 335
AlwI GGATC 2 cut(s) 42, 339
Ama87I CYCGRG 1 cut(s) 406
AoxI GGCC 2 cut(s) 118, 259
ApeKI GCWGC 4 cut(s) 176, 179, 321, 357
AspLEI GCGC 1 cut(s) 234
AspS9I GGNCC 2 cut(s) 225, 259
AsuC2I CCSGG 3 cut(s) 407, 408, 423
AsuHPI GGTGA 4 cut(s) 57, 118, 284, 437
AvaI CYCGRG 1 cut(s) 406
AvaII GGWCC 1 cut(s) 225
AxyI CCTNAGG 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 407
BanI GGYRCC 1 cut(s) 402
BanII GRGCYC 2 cut(s) 288, 423
Bbv12I GWGCWC 1 cut(s) 335
BbvI GCAGC 4 cut(s) 163, 191, 308, 344
BcgI CGANNNNNNTGC 2 cut(s) 195, 229
BciT130I CCWGG 3 cut(s) 229, 275, 317
BcnI CCSGG 3 cut(s) 407, 408, 423
BfaI CTAG 1 cut(s) 194
BfmI CTRYAG 2 cut(s) 114, 177
BglI GCCNNNNNGGC 1 cut(s) 267
BisI GCNGC 4 cut(s) 177, 180, 322, 358
BlsI GCNGC 4 cut(s) 178, 181, 323, 359
Bme1390I CCNGG 6 cut(s) 229, 275, 317, 407, 408, 423
Bme18I GGWCC 1 cut(s) 225
BmeT110I CYCGRG 1 cut(s) 406
BmgBI CACGTC 2 cut(s) 124, 399
BmgT120I GGNCC 2 cut(s) 225, 259
BmiI GGNNCC 3 cut(s) 104, 226, 404
BmrFI CCNGG 6 cut(s) 229, 275, 317, 407, 408, 423
BmrI ACTGGG 1 cut(s) 17
BmsI GCATC 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 17
BpuMI CCSGG 3 cut(s) 407, 408, 423
BsaJI CCNNGG 3 cut(s) 274, 316, 406
BsaWI WCCGGW 2 cut(s) 31, 347
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 12
Bse21I CCTNAGG 1 cut(s) 437
BseBI CCWGG 3 cut(s) 229, 275, 317
BseDI CCNNGG 3 cut(s) 274, 316, 406
BseGI GGATG 1 cut(s) 447
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMII CTCAG 2 cut(s) 301, 408
BseNI ACTGG 1 cut(s) 12
BseRI GAGGAG 1 cut(s) 236
BseSI GKGCMC 1 cut(s) 407
BseXI GCAGC 4 cut(s) 163, 191, 308, 344
BshFI GGCC 2 cut(s) 120, 261
BshNI GGYRCC 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 335
BsiHKCI CYCGRG 1 cut(s) 406
BsiSI CCGG 4 cut(s) 32, 348, 407, 423
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 1 cut(s) 347
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 2 cut(s) 120, 261
BsoBI CYCGRG 1 cut(s) 406
Bsp1286I GDGCHC 4 cut(s) 288, 335, 407, 423
Bsp143I GATC 2 cut(s) 34, 344
BspACI CCGC 2 cut(s) 130, 191
BspANI GGCC 2 cut(s) 120, 261
BspCNI CTCAG 2 cut(s) 300, 409
BspLI GGNNCC 3 cut(s) 104, 226, 404
BspMAI CTGCAG 1 cut(s) 181
BspPI GGATC 2 cut(s) 42, 339
BspT107I GGYRCC 1 cut(s) 402
BsrI ACTGG 1 cut(s) 12
BssECI CCNNGG 3 cut(s) 274, 316, 406
BssMI GATC 2 cut(s) 34, 344
Bst2UI CCWGG 3 cut(s) 229, 275, 317
Bst4CI ACNGT 2 cut(s) 82, 330
Bst6I CTCTTC 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 3 cut(s) 287, 417, 437
BstEII GGTNACC 1 cut(s) 63
BstF5I GGATG 1 cut(s) 447
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 2 cut(s) 37, 347
BstMBI GATC 2 cut(s) 34, 344
BstMWI GCNNNNNNNGC 3 cut(s) 10, 267, 330
BstNI CCWGG 3 cut(s) 229, 275, 317
BstNSI RCATGY 3 cut(s) 140, 144, 481
BstPI GGTNACC 1 cut(s) 63
BstSCI CCNGG 6 cut(s) 227, 273, 315, 405, 406, 421
BstSFI CTRYAG 2 cut(s) 114, 177
BstSLI GKGCMC 1 cut(s) 407
BstV1I GCAGC 4 cut(s) 163, 191, 308, 344
BstX2I RGATCY 2 cut(s) 34, 344
BstXI CCANNNNNNTGG 2 cut(s) 53, 75
BstYI RGATCY 2 cut(s) 34, 344
Bsu36I CCTNAGG 1 cut(s) 437
BsuRI GGCC 2 cut(s) 120, 261
BtrI CACGTC 2 cut(s) 124, 399
BtsCI GGATG 1 cut(s) 447
BtsIMutI CAGTG 1 cut(s) 326
Cac8I GCNNGC 1 cut(s) 142
CfoI GCGC 1 cut(s) 234
Cfr13I GGNCC 2 cut(s) 225, 259
Cfr9I CCCGGG 1 cut(s) 406
CviAII CATG 4 cut(s) 137, 141, 213, 478
DdeI CTNAG 3 cut(s) 287, 417, 437
DpnI GATC 2 cut(s) 36, 346
DpnII GATC 2 cut(s) 34, 344
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Eco24I GRGCYC 2 cut(s) 288, 423
Eco47I GGWCC 1 cut(s) 225
Eco81I CCTNAGG 1 cut(s) 437
Eco88I CYCGRG 1 cut(s) 406
Eco91I GGTNACC 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 225
EcoO65I GGTNACC 1 cut(s) 63
EcoRII CCWGG 3 cut(s) 227, 273, 315
EcoT22I ATGCAT 1 cut(s) 142
EcoT38I GRGCYC 2 cut(s) 288, 423
FaeI CATG 4 cut(s) 140, 144, 216, 481
FaiI YATR 7 cut(s) 138, 142, 214, 455, 457, 479, 484
FaqI GGGAC 1 cut(s) 364
FatI CATG 4 cut(s) 136, 140, 212, 477
FauI CCCGC 1 cut(s) 137
Fnu4HI GCNGC 4 cut(s) 177, 180, 322, 358
FokI GGATG 1 cut(s) 454
FriOI GRGCYC 2 cut(s) 288, 423
Fsp4HI GCNGC 4 cut(s) 177, 180, 322, 358
FspBI CTAG 1 cut(s) 194
GlaI GCGC 1 cut(s) 233
GluI GCNGC 4 cut(s) 177, 180, 322, 358
HaeIII GGCC 2 cut(s) 120, 261
HapII CCGG 4 cut(s) 32, 348, 407, 423
HhaI GCGC 1 cut(s) 234
Hin1II CATG 4 cut(s) 140, 144, 216, 481
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HpaII CCGG 4 cut(s) 32, 348, 407, 423
HphI GGTGA 4 cut(s) 57, 118, 284, 437
Hpy166II GTNNAC 2 cut(s) 78, 428
Hpy8I GTNNAC 2 cut(s) 78, 428
HpyCH4III ACNGT 2 cut(s) 82, 330
HpyCH4IV ACGT 3 cut(s) 123, 398, 447
HpyCH4V TGCA 4 cut(s) 140, 179, 216, 360
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 267, 330
HpyF3I CTNAG 3 cut(s) 287, 417, 437
HpySE526I ACGT 3 cut(s) 123, 398, 447
Hsp92II CATG 4 cut(s) 140, 144, 216, 481
HspAI GCGC 1 cut(s) 232
Kzo9I GATC 2 cut(s) 34, 344
LmnI GCTCC 1 cut(s) 108
Lsp1109I GCAGC 4 cut(s) 163, 191, 308, 344
LweI GCATC 1 cut(s) 243
MaeI CTAG 1 cut(s) 194
MaeII ACGT 3 cut(s) 123, 398, 447
MaeIII GTNAC 6 cut(s) 63, 124, 278, 290, 311, 463
MalI GATC 2 cut(s) 36, 346
MboI GATC 2 cut(s) 34, 344
MboII GAAGA 1 cut(s) 241
MflI RGATCY 2 cut(s) 34, 344
MhlI GDGCHC 4 cut(s) 288, 335, 407, 423
MluCI AATT 1 cut(s) 217
MnlI CCTC 5 cut(s) 59, 190, 252, 257, 306
Mph1103I ATGCAT 1 cut(s) 142
MslI CAYNNNNRTG 1 cut(s) 139
MspI CCGG 4 cut(s) 32, 348, 407, 423
MspR9I CCNGG 6 cut(s) 229, 275, 317, 407, 408, 423
MvaI CCWGG 3 cut(s) 229, 275, 317
MwoI GCNNNNNNNGC 3 cut(s) 10, 267, 330
NciI CCSGG 3 cut(s) 407, 408, 423
NdeII GATC 2 cut(s) 34, 344
NlaIII CATG 4 cut(s) 140, 144, 216, 481
NlaIV GGNNCC 3 cut(s) 104, 226, 404
NmuCI GTSAC 5 cut(s) 63, 124, 278, 290, 311
NsiI ATGCAT 1 cut(s) 142
NspI RCATGY 3 cut(s) 140, 144, 481
PaeI GCATGC 1 cut(s) 144
PciI ACATGT 1 cut(s) 477
PkrI GCNGC 4 cut(s) 178, 181, 323, 359
PpuMI RGGWCCY 1 cut(s) 225
PscI ACATGT 1 cut(s) 477
Psp1406I AACGTT 1 cut(s) 447
Psp5II RGGWCCY 1 cut(s) 225
Psp6I CCWGG 3 cut(s) 227, 273, 315
PspEI GGTNACC 1 cut(s) 63
PspGI CCWGG 3 cut(s) 227, 273, 315
PspN4I GGNNCC 3 cut(s) 104, 226, 404
PspPI GGNCC 2 cut(s) 225, 259
PspPPI RGGWCCY 1 cut(s) 225
PstI CTGCAG 1 cut(s) 181
PsuI RGATCY 2 cut(s) 34, 344
RseI CAYNNNNRTG 1 cut(s) 139
SatI GCNGC 4 cut(s) 177, 180, 322, 358
Sau3AI GATC 2 cut(s) 34, 344
Sau96I GGNCC 2 cut(s) 225, 259
ScrFI CCNGG 6 cut(s) 229, 275, 317, 407, 408, 423
SduI GDGCHC 4 cut(s) 288, 335, 407, 423
SetI ASST 8 cut(s) 51, 126, 276, 318, 359, 388, 401, 450
SfaNI GCATC 1 cut(s) 243
SfcI CTRYAG 2 cut(s) 114, 177
SinI GGWCC 1 cut(s) 225
SmaI CCCGGG 1 cut(s) 408
SmiMI CAYNNNNRTG 1 cut(s) 139
SphI GCATGC 1 cut(s) 144
SrfI GCCCGGGC 1 cut(s) 408
Sse9I AATT 1 cut(s) 217
SsiI CCGC 2 cut(s) 130, 191
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 6 cut(s) 227, 273, 315, 405, 406, 421
TaaI ACNGT 2 cut(s) 82, 330
TaiI ACGT 3 cut(s) 126, 401, 450
TasI AATT 1 cut(s) 217
TscAI CASTG 1 cut(s) 333
TseFI GTSAC 5 cut(s) 63, 124, 278, 290, 311
TseI GCWGC 4 cut(s) 176, 179, 321, 357
Tsp45I GTSAC 5 cut(s) 63, 124, 278, 290, 311
TspDTI ATGAA 1 cut(s) 458
TspMI CCCGGG 1 cut(s) 406
TspRI CASTG 1 cut(s) 333
VpaK11BI GGWCC 1 cut(s) 225
XceI RCATGY 3 cut(s) 140, 144, 481
XmaI CCCGGG 1 cut(s) 406
XspI CTAG 1 cut(s) 194
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.