Ubiquitin carboxyl-terminal hydrolase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MATH_2 | PF22486 | 53 - 176 | 2e-39 | MATH domain |
| MATH | PF00917 | 58 - 178 | 3.1e-18 | MATH domain |
| UCH | PF00443 | 196 - 517 | 9.8e-60 | Ubiquitin carboxyl-terminal hydrolase |
| UCH_1 | PF13423 | 196 - 471 | 5.2e-15 | Ubiquitin carboxyl-terminal hydrolase |
| USP7_ICP0_bdg | PF12436 | 621 - 872 | 3.4e-78 | ICP0-binding domain of Ubiquitin-specific protease 7 |
| USP7_C2 | PF14533 | 920 - 1130 | 3.8e-57 | Ubiquitin-specific protease C-terminal |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 237, 2724 |
| AatII | GACGTC | 1 cut(s) | 2364 |
| Acc16I | TGCGCA | 2 cut(s) | 345, 2541 |
| Acc36I | ACCTGC | 3 cut(s) | 3130, 3220, 3303 |
| AccB1I | GGYRCC | 1 cut(s) | 52 |
| AccII | CGCG | 1 cut(s) | 1416 |
| AciI | CCGC | 5 cut(s) | 56, 244, 305, 1297, 3088 |
| AclWI | GGATC | 1 cut(s) | 2510 |
| AcsI | RAATTY | 4 cut(s) | 622, 1226, 2028, 3148 |
| AcuI | CTGAAG | 5 cut(s) | 643, 690, 1139, 1145, 3219 |
| AcyI | GRCGYC | 2 cut(s) | 1802, 2361 |
| AdeI | CACNNNGTG | 1 cut(s) | 2999 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 484, 485, 1252, 1819, 3139, 3370 |
| AflIII | ACRYGT | 2 cut(s) | 216, 1414 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 283 |
| AjnI | CCWGG | 4 cut(s) | 492, 1489, 1926, 3363 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1998, 2030 |
| Alw21I | GWGCWC | 3 cut(s) | 1992, 2654, 2885 |
| Alw26I | GTCTC | 1 cut(s) | 3113 |
| AlwI | GGATC | 1 cut(s) | 2510 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 319, 3364 |
| Ama87I | CYCGRG | 2 cut(s) | 1707, 3287 |
| AoxI | GGCC | 5 cut(s) | 1373, 1677, 1878, 2018, 2800 |
| ApeKI | GCWGC | 3 cut(s) | 319, 2698, 2714 |
| ApoI | RAATTY | 4 cut(s) | 622, 1226, 2028, 3148 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1733, 1765 |
| AseI | ATTAAT | 2 cut(s) | 2172, 2901 |
| AspLEI | GCGC | 3 cut(s) | 319, 346, 2542 |
| AsuC2I | CCSGG | 1 cut(s) | 1556 |
| AsuHPI | GGTGA | 5 cut(s) | 1085, 1266, 1475, 2863, 3197 |
| AsuII | TTCGAA | 1 cut(s) | 1786 |
| AvaI | CYCGRG | 2 cut(s) | 1707, 3287 |
| AvaII | GGWCC | 7 cut(s) | 77, 541, 1717, 1762, 2268, 2617, 3232 |
| AxyI | CCTNAGG | 1 cut(s) | 1616 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 495, 528 |
| BanI | GGYRCC | 1 cut(s) | 52 |
| BanII | GRGCYC | 3 cut(s) | 594, 1992, 2654 |
| BauI | CACGAG | 1 cut(s) | 423 |
| BbsI | GAAGAC | 1 cut(s) | 3071 |
| Bbv12I | GWGCWC | 3 cut(s) | 1992, 2654, 2885 |
| BbvCI | CCTCAGC | 1 cut(s) | 81 |
| BbvI | GCAGC | 3 cut(s) | 306, 2685, 2701 |
| BccI | CCATC | 5 cut(s) | 795, 1689, 2291, 2585, 2663 |
| BciT130I | CCWGG | 4 cut(s) | 494, 1491, 1928, 3365 |
| BciVI | GTATCC | 3 cut(s) | 240, 799, 1839 |
| BclI | TGATCA | 1 cut(s) | 1387 |
| BcnI | CCSGG | 1 cut(s) | 1556 |
| BcoDI | GTCTC | 1 cut(s) | 3113 |
| BfaI | CTAG | 1 cut(s) | 1721 |
| BfmI | CTRYAG | 3 cut(s) | 24, 360, 3296 |
| BfoI | RGCGCY | 1 cut(s) | 320 |
| BfuAI | ACCTGC | 3 cut(s) | 3130, 3220, 3303 |
| BfuI | GTATCC | 3 cut(s) | 240, 799, 1839 |
| BglII | AGATCT | 2 cut(s) | 2976, 2985 |
| BisI | GCNGC | 4 cut(s) | 56, 320, 2699, 2715 |
| BlsI | GCNGC | 4 cut(s) | 57, 321, 2700, 2716 |
| BmcAI | AGTACT | 2 cut(s) | 386, 3029 |
| Bme1390I | CCNGG | 5 cut(s) | 494, 1491, 1556, 1928, 3365 |
| Bme18I | GGWCC | 7 cut(s) | 77, 541, 1717, 1762, 2268, 2617, 3232 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 283 |
| BmeT110I | CYCGRG | 2 cut(s) | 1707, 3287 |
| BmiI | GGNNCC | 6 cut(s) | 54, 108, 144, 1301, 3159, 3234 |
| BmrFI | CCNGG | 5 cut(s) | 494, 1491, 1556, 1928, 3365 |
| BmsI | GCATC | 7 cut(s) | 36, 723, 960, 1102, 1464, 1973, 3126 |
| BpiI | GAAGAC | 1 cut(s) | 3071 |
| BpmI | CTGGAG | 3 cut(s) | 617, 983, 1131 |
| Bpu10I | CCTNAGC | 2 cut(s) | 81, 2679 |
| Bpu14I | TTCGAA | 1 cut(s) | 1786 |
| BpuEI | CTTGAG | 6 cut(s) | 84, 578, 890, 1088, 1976, 2978 |
| BpuMI | CCSGG | 1 cut(s) | 1556 |
| BsaBI | GATNNNNATC | 1 cut(s) | 445 |
| BsaHI | GRCGYC | 2 cut(s) | 1802, 2361 |
| BsaJI | CCNNGG | 5 cut(s) | 87, 522, 1926, 2055, 3364 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2659, 2689 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 484, 485, 1252, 1819, 3139, 3370 |
| Bse118I | RCCGGY | 1 cut(s) | 109 |
| Bse1I | ACTGG | 9 cut(s) | 134, 557, 583, 1148, 1850, 3025, 3035, 3318, 3440 |
| Bse21I | CCTNAGG | 1 cut(s) | 1616 |
| Bse3DI | GCAATG | 1 cut(s) | 3035 |
| Bse8I | GATNNNNATC | 1 cut(s) | 445 |
| BseBI | CCWGG | 4 cut(s) | 494, 1491, 1928, 3365 |
| BseDI | CCNNGG | 5 cut(s) | 87, 522, 1926, 2055, 3364 |
| BseJI | GATNNNNATC | 1 cut(s) | 445 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 484, 485, 1252, 1819, 3139, 3370 |
| BseMI | GCAATG | 1 cut(s) | 3035 |
| BseMII | CTCAG | 4 cut(s) | 95, 475, 681, 2085 |
| BseNI | ACTGG | 9 cut(s) | 134, 557, 583, 1148, 1850, 3025, 3035, 3318, 3440 |
| BseRI | GAGGAG | 9 cut(s) | 6, 56, 155, 620, 1658, 1675, 2604, 3062, 3346 |
| BseXI | GCAGC | 3 cut(s) | 306, 2685, 2701 |
| BseYI | CCCAGC | 1 cut(s) | 479 |
| BsgI | GTGCAG | 3 cut(s) | 857, 3063, 3108 |
| Bsh1236I | CGCG | 1 cut(s) | 1416 |
| BshFI | GGCC | 5 cut(s) | 1375, 1679, 1880, 2020, 2802 |
| BshNI | GGYRCC | 1 cut(s) | 52 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1992, 2654, 2885 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1707, 3287 |
| BsiSI | CCGG | 3 cut(s) | 110, 1555, 2021 |
| BslFI | GGGAC | 8 cut(s) | 1208, 1571, 1754, 1890, 2315, 2348, 3218, 3270 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 484, 485, 1252, 1819, 3139, 3370 |
| BsmAI | GTCTC | 1 cut(s) | 3113 |
| BsmFI | GGGAC | 8 cut(s) | 1208, 1571, 1754, 1890, 2315, 2348, 3218, 3270 |
| BsmI | GAATGC | 2 cut(s) | 953, 3266 |
| BsnI | GGCC | 5 cut(s) | 1375, 1679, 1880, 2020, 2802 |
| BsoBI | CYCGRG | 2 cut(s) | 1707, 3287 |
| Bsp119I | TTCGAA | 1 cut(s) | 1786 |
| Bsp1286I | GDGCHC | 4 cut(s) | 594, 1992, 2654, 2885 |
| Bsp1407I | TGTACA | 2 cut(s) | 1548, 2383 |
| Bsp143I | GATC | 9 cut(s) | 28, 466, 994, 1216, 1387, 2515, 2976, 2985, 3398 |
| Bsp19I | CCATGG | 1 cut(s) | 87 |
| BspACI | CCGC | 5 cut(s) | 56, 244, 305, 1297, 3088 |
| BspANI | GGCC | 5 cut(s) | 1375, 1679, 1880, 2020, 2802 |
| BspCNI | CTCAG | 4 cut(s) | 94, 474, 682, 2086 |
| BspFNI | CGCG | 1 cut(s) | 1416 |
| BspHI | TCATGA | 2 cut(s) | 3082, 3178 |
| BspLI | GGNNCC | 6 cut(s) | 54, 108, 144, 1301, 3159, 3234 |
| BspMAI | CTGCAG | 1 cut(s) | 3300 |
| BspMI | ACCTGC | 3 cut(s) | 3130, 3220, 3303 |
| BspPI | GGATC | 1 cut(s) | 2510 |
| BspQI | GCTCTTC | 1 cut(s) | 732 |
| BspT104I | TTCGAA | 1 cut(s) | 1786 |
| BspT107I | GGYRCC | 1 cut(s) | 52 |
| BsrDI | GCAATG | 1 cut(s) | 3035 |
| BsrFI | RCCGGY | 1 cut(s) | 109 |
| BsrGI | TGTACA | 2 cut(s) | 1548, 2383 |
| BsrI | ACTGG | 9 cut(s) | 134, 557, 583, 1148, 1850, 3025, 3035, 3318, 3440 |
| BssAI | RCCGGY | 1 cut(s) | 109 |
| BssECI | CCNNGG | 5 cut(s) | 87, 522, 1926, 2055, 3364 |
| BssMI | GATC | 9 cut(s) | 28, 466, 994, 1216, 1387, 2515, 2976, 2985, 3398 |
| BssNI | GRCGYC | 2 cut(s) | 1802, 2361 |
| BssSI | CACGAG | 1 cut(s) | 423 |
| BssT1I | CCWWGG | 2 cut(s) | 87, 2055 |
| Bst2BI | CACGAG | 1 cut(s) | 423 |
| Bst2UI | CCWGG | 4 cut(s) | 494, 1491, 1928, 3365 |
| Bst6I | CTCTTC | 7 cut(s) | 732, 1239, 1317, 1430, 1464, 3057, 3237 |
| BstACI | GRCGYC | 2 cut(s) | 1802, 2361 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 319 |
| BstAUI | TGTACA | 2 cut(s) | 1548, 2383 |
| BstBI | TTCGAA | 1 cut(s) | 1786 |
| BstC8I | GCNNGC | 6 cut(s) | 111, 315, 1343, 3042, 3211, 3378 |
| BstDEI | CTNAG | 9 cut(s) | 81, 461, 690, 1116, 1324, 1616, 2094, 2679, 3393 |
| BstDSI | CCRYGG | 1 cut(s) | 87 |
| BstEII | GGTNACC | 1 cut(s) | 488 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1817 |
| BstFNI | CGCG | 1 cut(s) | 1416 |
| BstH2I | RGCGCY | 1 cut(s) | 320 |
| BstHHI | GCGC | 3 cut(s) | 319, 346, 2542 |
| BstKTI | GATC | 9 cut(s) | 31, 469, 997, 1219, 1390, 2518, 2979, 2988, 3401 |
| BstMAI | GTCTC | 1 cut(s) | 3113 |
| BstMBI | GATC | 9 cut(s) | 28, 466, 994, 1216, 1387, 2515, 2976, 2985, 3398 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 55, 319, 1861, 2189, 2794, 3386 |
| BstNI | CCWGG | 4 cut(s) | 494, 1491, 1928, 3365 |
| BstNSI | RCATGY | 4 cut(s) | 220, 703, 1543, 3380 |
| BstPI | GGTNACC | 1 cut(s) | 488 |
| BstSCI | CCNGG | 5 cut(s) | 492, 1489, 1554, 1926, 3363 |
| BstSFI | CTRYAG | 3 cut(s) | 24, 360, 3296 |
| BstUI | CGCG | 1 cut(s) | 1416 |
| BstV1I | GCAGC | 3 cut(s) | 306, 2685, 2701 |
| BstV2I | GAAGAC | 1 cut(s) | 3071 |
| BstX2I | RGATCY | 2 cut(s) | 2976, 2985 |
| BstYI | RGATCY | 2 cut(s) | 2976, 2985 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1616 |
| BsuI | GTATCC | 3 cut(s) | 240, 799, 1839 |
| BsuRI | GGCC | 5 cut(s) | 1375, 1679, 1880, 2020, 2802 |
| BtgI | CCRYGG | 1 cut(s) | 87 |
| BtsI | GCAGTG | 2 cut(s) | 772, 2535 |
| BtsIMutI | CAGTG | 9 cut(s) | 141, 469, 772, 1397, 1567, 1857, 2535, 2883, 3004 |
| BveI | ACCTGC | 3 cut(s) | 3130, 3220, 3303 |
| Cac8I | GCNNGC | 6 cut(s) | 111, 315, 1343, 3042, 3211, 3378 |
| CaiI | CAGNNNCTG | 2 cut(s) | 319, 3364 |
| CciI | TCATGA | 2 cut(s) | 3082, 3178 |
| CfoI | GCGC | 3 cut(s) | 319, 346, 2542 |
| Cfr10I | RCCGGY | 1 cut(s) | 109 |
| CseI | GACGC | 2 cut(s) | 1810, 2672 |
| CsiI | ACCWGGT | 1 cut(s) | 492 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2618, 2653 |
| DdeI | CTNAG | 9 cut(s) | 81, 461, 690, 1116, 1324, 1616, 2094, 2679, 3393 |
| DpnI | GATC | 9 cut(s) | 30, 468, 996, 1218, 1389, 2517, 2978, 2987, 3400 |
| DpnII | GATC | 9 cut(s) | 28, 466, 994, 1216, 1387, 2515, 2976, 2985, 3398 |
| DraIII | CACNNNGTG | 1 cut(s) | 2999 |
| DriI | GACNNNNNGTC | 1 cut(s) | 283 |
| Eam1104I | CTCTTC | 7 cut(s) | 732, 1239, 1317, 1430, 1464, 3057, 3237 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 283 |
| EarI | CTCTTC | 7 cut(s) | 732, 1239, 1317, 1430, 1464, 3057, 3237 |
| EciI | GGCGGA | 2 cut(s) | 259, 320 |
| Ecl136II | GAGCTC | 2 cut(s) | 1990, 2652 |
| Eco130I | CCWWGG | 2 cut(s) | 87, 2055 |
| Eco147I | AGGCCT | 1 cut(s) | 2802 |
| Eco24I | GRGCYC | 3 cut(s) | 594, 1992, 2654 |
| Eco47I | GGWCC | 7 cut(s) | 77, 541, 1717, 1762, 2268, 2617, 3232 |
| Eco53kI | GAGCTC | 2 cut(s) | 1990, 2652 |
| Eco57I | CTGAAG | 5 cut(s) | 643, 690, 1139, 1145, 3219 |
| Eco81I | CCTNAGG | 1 cut(s) | 1616 |
| Eco88I | CYCGRG | 2 cut(s) | 1707, 3287 |
| Eco91I | GGTNACC | 1 cut(s) | 488 |
| EcoICRI | GAGCTC | 2 cut(s) | 1990, 2652 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1817 |
| EcoO109I | RGGNCCY | 5 cut(s) | 77, 541, 1717, 2268, 3232 |
| EcoO65I | GGTNACC | 1 cut(s) | 488 |
| EcoRI | GAATTC | 1 cut(s) | 622 |
| EcoRII | CCWGG | 4 cut(s) | 492, 1489, 1926, 3363 |
| EcoT14I | CCWWGG | 2 cut(s) | 87, 2055 |
| EcoT22I | ATGCAT | 1 cut(s) | 953 |
| EcoT38I | GRGCYC | 3 cut(s) | 594, 1992, 2654 |
| ErhI | CCWWGG | 2 cut(s) | 87, 2055 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 703, 735, 1998, 2030 |
| FaqI | GGGAC | 8 cut(s) | 1208, 1571, 1754, 1890, 2315, 2348, 3218, 3270 |
| FauNDI | CATATG | 4 cut(s) | 678, 811, 3403, 3430 |
| FbaI | TGATCA | 1 cut(s) | 1387 |
| Fnu4HI | GCNGC | 4 cut(s) | 56, 320, 2699, 2715 |
| FriOI | GRGCYC | 3 cut(s) | 594, 1992, 2654 |
| Fsp4HI | GCNGC | 4 cut(s) | 56, 320, 2699, 2715 |
| FspBI | CTAG | 1 cut(s) | 1721 |
| FspI | TGCGCA | 2 cut(s) | 345, 2541 |
| GlaI | GCGC | 3 cut(s) | 318, 345, 2541 |
| GluI | GCNGC | 4 cut(s) | 56, 320, 2699, 2715 |
| GsaI | CCCAGC | 1 cut(s) | 483 |
| GsuI | CTGGAG | 3 cut(s) | 617, 983, 1131 |
| HaeII | RGCGCY | 1 cut(s) | 320 |
| HaeIII | GGCC | 5 cut(s) | 1375, 1679, 1880, 2020, 2802 |
| HapII | CCGG | 3 cut(s) | 110, 1555, 2021 |
| HgaI | GACGC | 2 cut(s) | 1810, 2672 |
| HhaI | GCGC | 3 cut(s) | 319, 346, 2542 |
| Hin1I | GRCGYC | 2 cut(s) | 1802, 2361 |
| Hin6I | GCGC | 3 cut(s) | 317, 344, 2540 |
| HinP1I | GCGC | 3 cut(s) | 317, 344, 2540 |
| HindIII | AAGCTT | 3 cut(s) | 746, 866, 2081 |
| HpaII | CCGG | 3 cut(s) | 110, 1555, 2021 |
| HphI | GGTGA | 5 cut(s) | 1085, 1266, 1475, 2863, 3197 |
| Hpy99I | CGWCG | 1 cut(s) | 230 |
| HpyCH4IV | ACGT | 2 cut(s) | 1063, 2361 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 55, 319, 1861, 2189, 2794, 3386 |
| HpyF3I | CTNAG | 9 cut(s) | 81, 461, 690, 1116, 1324, 1616, 2094, 2679, 3393 |
| HpySE526I | ACGT | 2 cut(s) | 1063, 2361 |
| Hsp92I | GRCGYC | 2 cut(s) | 1802, 2361 |
| HspAI | GCGC | 3 cut(s) | 317, 344, 2540 |
| KroI | GCCGGC | 1 cut(s) | 109 |
| KroNI | GCCGGC | 1 cut(s) | 111 |
| Ksp22I | TGATCA | 1 cut(s) | 1387 |
| Kzo9I | GATC | 9 cut(s) | 28, 466, 994, 1216, 1387, 2515, 2976, 2985, 3398 |
| LguI | GCTCTTC | 1 cut(s) | 732 |
| LmnI | GCTCC | 8 cut(s) | 106, 142, 605, 2197, 2657, 3355, 3373, 3394 |
| Lsp1109I | GCAGC | 3 cut(s) | 306, 2685, 2701 |
| LweI | GCATC | 7 cut(s) | 36, 723, 960, 1102, 1464, 1973, 3126 |
| MabI | ACCWGGT | 1 cut(s) | 492 |
| MaeI | CTAG | 1 cut(s) | 1721 |
| MaeII | ACGT | 2 cut(s) | 1063, 2361 |
| MaeIII | GTNAC | 6 cut(s) | 488, 1073, 1272, 1417, 1562, 3422 |
| MalI | GATC | 9 cut(s) | 30, 468, 996, 1218, 1389, 2517, 2978, 2987, 3400 |
| MboI | GATC | 9 cut(s) | 28, 466, 994, 1216, 1387, 2515, 2976, 2985, 3398 |
| MfeI | CAATTG | 2 cut(s) | 171, 1952 |
| MflI | RGATCY | 2 cut(s) | 2976, 2985 |
| MhlI | GDGCHC | 4 cut(s) | 594, 1992, 2654, 2885 |
| MluI | ACGCGT | 1 cut(s) | 1414 |
| MlyI | GAGTC | 5 cut(s) | 7, 557, 992, 2526, 3296 |
| MmeI | TCCRAC | 5 cut(s) | 173, 311, 1927, 2974, 3351 |
| Mph1103I | ATGCAT | 1 cut(s) | 953 |
| MroNI | GCCGGC | 1 cut(s) | 109 |
| MslI | CAYNNNNRTG | 7 cut(s) | 956, 1335, 1359, 1544, 2469, 3183, 3429 |
| MspI | CCGG | 3 cut(s) | 110, 1555, 2021 |
| MspR9I | CCNGG | 5 cut(s) | 494, 1491, 1556, 1928, 3365 |
| MunI | CAATTG | 2 cut(s) | 171, 1952 |
| Mva1269I | GAATGC | 2 cut(s) | 953, 3266 |
| MvaI | CCWGG | 4 cut(s) | 494, 1491, 1928, 3365 |
| MvnI | CGCG | 1 cut(s) | 1416 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 55, 319, 1861, 2189, 2794, 3386 |
| NaeI | GCCGGC | 1 cut(s) | 111 |
| NciI | CCSGG | 1 cut(s) | 1556 |
| NcoI | CCATGG | 1 cut(s) | 87 |
| NdeI | CATATG | 4 cut(s) | 678, 811, 3403, 3430 |
| NdeII | GATC | 9 cut(s) | 28, 466, 994, 1216, 1387, 2515, 2976, 2985, 3398 |
| NgoMIV | GCCGGC | 1 cut(s) | 109 |
| NlaIV | GGNNCC | 6 cut(s) | 54, 108, 144, 1301, 3159, 3234 |
| NmeAIII | GCCGAG | 1 cut(s) | 547 |
| NmuCI | GTSAC | 5 cut(s) | 1073, 1272, 1417, 1562, 3422 |
| NsbI | TGCGCA | 2 cut(s) | 345, 2541 |
| NsiI | ATGCAT | 1 cut(s) | 953 |
| NspI | RCATGY | 4 cut(s) | 220, 703, 1543, 3380 |
| NspV | TTCGAA | 1 cut(s) | 1786 |
| PaeI | GCATGC | 1 cut(s) | 3380 |
| PaeR7I | CTCGAG | 1 cut(s) | 1707 |
| PagI | TCATGA | 2 cut(s) | 3082, 3178 |
| PceI | AGGCCT | 1 cut(s) | 2802 |
| PciI | ACATGT | 1 cut(s) | 216 |
| PciSI | GCTCTTC | 1 cut(s) | 732 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1783, 1909 |
| PctI | GAATGC | 2 cut(s) | 953, 3266 |
| PdiI | GCCGGC | 1 cut(s) | 111 |
| PfoI | TCCNGGA | 1 cut(s) | 1554 |
| PkrI | GCNGC | 4 cut(s) | 57, 321, 2700, 2716 |
| PleI | GAGTC | 5 cut(s) | 7, 557, 991, 2526, 3296 |
| PpsI | GAGTC | 5 cut(s) | 7, 557, 991, 2526, 3296 |
| PpuMI | RGGWCCY | 5 cut(s) | 77, 541, 1717, 2268, 3232 |
| PscI | ACATGT | 1 cut(s) | 216 |
| PshBI | ATTAAT | 2 cut(s) | 2172, 2901 |
| PsiI | TTATAA | 2 cut(s) | 237, 2724 |
| Psp124BI | GAGCTC | 2 cut(s) | 1992, 2654 |
| Psp5II | RGGWCCY | 5 cut(s) | 77, 541, 1717, 2268, 3232 |
| Psp6I | CCWGG | 4 cut(s) | 492, 1489, 1926, 3363 |
| PspEI | GGTNACC | 1 cut(s) | 488 |
| PspFI | CCCAGC | 1 cut(s) | 479 |
| PspGI | CCWGG | 4 cut(s) | 492, 1489, 1926, 3363 |
| PspN4I | GGNNCC | 6 cut(s) | 54, 108, 144, 1301, 3159, 3234 |
| PspPPI | RGGWCCY | 5 cut(s) | 77, 541, 1717, 2268, 3232 |
| PstI | CTGCAG | 1 cut(s) | 3300 |
| PstNI | CAGNNNCTG | 2 cut(s) | 319, 3364 |
| PsuI | RGATCY | 2 cut(s) | 2976, 2985 |
| RseI | CAYNNNNRTG | 7 cut(s) | 956, 1335, 1359, 1544, 2469, 3183, 3429 |
| SacI | GAGCTC | 2 cut(s) | 1992, 2654 |
| SapI | GCTCTTC | 1 cut(s) | 732 |
| SatI | GCNGC | 4 cut(s) | 56, 320, 2699, 2715 |
| Sau3AI | GATC | 9 cut(s) | 28, 466, 994, 1216, 1387, 2515, 2976, 2985, 3398 |
| SbfI | CCTGCAGG | 1 cut(s) | 3300 |
| ScaI | AGTACT | 2 cut(s) | 386, 3029 |
| SchI | GAGTC | 5 cut(s) | 7, 557, 992, 2526, 3296 |
| ScrFI | CCNGG | 5 cut(s) | 494, 1491, 1556, 1928, 3365 |
| SdaI | CCTGCAGG | 1 cut(s) | 3300 |
| SduI | GDGCHC | 4 cut(s) | 594, 1992, 2654, 2885 |
| SexAI | ACCWGGT | 1 cut(s) | 492 |
| SfaNI | GCATC | 7 cut(s) | 36, 723, 960, 1102, 1464, 1973, 3126 |
| SfcI | CTRYAG | 3 cut(s) | 24, 360, 3296 |
| Sfr274I | CTCGAG | 1 cut(s) | 1707 |
| SfuI | TTCGAA | 1 cut(s) | 1786 |
| SinI | GGWCC | 7 cut(s) | 77, 541, 1717, 1762, 2268, 2617, 3232 |
| SlaI | CTCGAG | 1 cut(s) | 1707 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 956, 1335, 1359, 1544, 2469, 3183, 3429 |
| SmlI | CTYRAG | 7 cut(s) | 99, 593, 869, 1067, 1707, 1991, 2957 |
| SmoI | CTYRAG | 7 cut(s) | 99, 593, 869, 1067, 1707, 1991, 2957 |
| SphI | GCATGC | 1 cut(s) | 3380 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 3300 |
| SseBI | AGGCCT | 1 cut(s) | 2802 |
| SsiI | CCGC | 5 cut(s) | 56, 244, 305, 1297, 3088 |
| SspMI | CTAG | 1 cut(s) | 1721 |
| SstI | GAGCTC | 2 cut(s) | 1992, 2654 |
| StuI | AGGCCT | 1 cut(s) | 2802 |
| StyD4I | CCNGG | 5 cut(s) | 492, 1489, 1554, 1926, 3363 |
| StyI | CCWWGG | 2 cut(s) | 87, 2055 |
| TaiI | ACGT | 2 cut(s) | 1066, 2364 |
| TaqI | TCGA | 7 cut(s) | 72, 185, 1529, 1708, 1786, 2278, 2587 |
| TatI | WGTACW | 5 cut(s) | 116, 384, 1548, 2383, 3027 |
| TauI | GCSGC | 1 cut(s) | 58 |
| TscAI | CASTG | 9 cut(s) | 141, 469, 772, 1397, 1567, 1857, 2542, 2890, 3004 |
| TseFI | GTSAC | 5 cut(s) | 1073, 1272, 1417, 1562, 3422 |
| TseI | GCWGC | 3 cut(s) | 319, 2698, 2714 |
| Tsp45I | GTSAC | 5 cut(s) | 1073, 1272, 1417, 1562, 3422 |
| TspGWI | ACGGA | 3 cut(s) | 77, 524, 2726 |
| TspRI | CASTG | 9 cut(s) | 141, 469, 772, 1397, 1567, 1857, 2542, 2890, 3004 |
| VpaK11BI | GGWCC | 7 cut(s) | 77, 541, 1717, 1762, 2268, 2617, 3232 |
| VspI | ATTAAT | 2 cut(s) | 2172, 2901 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1817 |
| XapI | RAATTY | 4 cut(s) | 622, 1226, 2028, 3148 |
| XceI | RCATGY | 4 cut(s) | 220, 703, 1543, 3380 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1487 |
| XhoI | CTCGAG | 1 cut(s) | 1707 |
| XspI | CTAG | 1 cut(s) | 1721 |
| ZraI | GACGTC | 1 cut(s) | 2362 |
| ZrmI | AGTACT | 2 cut(s) | 386, 3029 |
| Zsp2I | ATGCAT | 1 cut(s) | 953 |