Rroxscaffold_1G00010670

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000333
Physical Location & Seq
Reverse (-)
13561847 .. 13567829
5983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00010670.1

Sequence Viewer

Length: 1503 bp
ATGGTAAACCCAGAACCCCAAACCCCATACAGACTCGACTACAACGCCAATTTCCGCGACTGGAGAACCAAGCTCGACTCTGTCCTCGACCAGAACCAAGTCAAGTACGTCCTCACGGAACCAAAACCCCCCGAGCCCACAGGCGCAACCCCTCAGAACGACGTCGCCCGCCACCAGAAATGGCTCCTCGACGACTTCACCGCCCGCCACGTCATCCTCGGAGCCCTGCACGAAAGGGTTTACGTGTCTTATCACAGCCACAAAACCGCCAGCTCCCTCCTGGAAGCTCTGACGGCCCACTTCACGAAGCCCTCCATGTCCCGGAGACTGGTCAAGTTCAGGCGCTACATGGAGCACAGATTGGCCGAGGGCAAATCGGTATATGAGCACGTGTCGGAGATGGGTTCCATGGCTGCTGGGCTAGAGAGTGAGGGAGTGAGAGTTTCGGAGGAGTTGCAGGTTTTGATGCTGATGAATAGCTTGCCGGACAGGTGGGATGAGACGATTGGTGGGCTTATAGTGAACATGGATGTAGATGGTCCAGATGAAATGGGTCTCGACAAGGTGAGCAAGAGGCTCATAGACTTGGTTTTGAAGAAAGACCAGGAAGAAAATCCACACCTGTATGCGACTATAAAGCTTGCCCGAGAGGAGGATCTAGTGGAGCAGATTGGAAAAGACTTGTATTTTGACCTTGTGGATCATGAAAAAGTCAGCAGTTTTTGTATTCTGAAGGAGACGCCATTTTACCGATTTAAGGAGGAGGTCGCTAAAGAGTTTGGCATACCAGTACAATATCAGCGCTACTGGCGGTGGATGAAGCGTCAAAACAATACATATCGCCCAGGCTATCCATTGACACTTATGGAGGAAACAGTATCTGTTAAAGAGTTGACTGGTAATCGTTCAGAAGTAAACTTGTTCTTAGAAGTAGAGCTTGGGCTGGATTTACACCCTATCGCTCCACCTGACATGACAAGAGATGTCATTCTTCTCTTCTTTAAGCTTTATGATCCAGAAACAGAAGAGCTACGTTATGTTGGAAGGCTATTTGTCAACCTCAGTGGTAAACCTACCGAAATCTTATCGAAATTAAATAAATTTGCTGGCTATGCCCTGGATCAAGAGATCGACCTTTATGAGGAAATTAAGTTTCAACCCGCCGTCATGTGTGAGCTCATTGACAAGAATTTTACATTTCGAGCCAGCCAGCTTGAGGATGGAGACATTGTCTGCTTTCAGAAACCAACTCCAGTAGAAATTGGTTGTTTCCGGTATCCAAATGTCCAGTCTTTTCTGGACTCTGTGCCTGTACGTCATTCCGCAAGTTCCGAGGCAAACACCCCAGTTGCAGTCAATGTAAGAGGAAGAGGAAGAGGAAGATCTAGTTGGGGAGTTTTTAGGGGCAGAGGAAGGGGCAGAGGAAGGAGCATTGGGAGTGGGCTAGAGCCACCTGCAATGCAAACTACTAGTGACAACGAAAGAGGCTGGGAAGAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203
Pfam Domains
Protein Families
MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

500

Amino Acids

57.5

Weight (kDa)

5.62

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 28 - 172 3.8e-20 gag-polypeptide of LTR copia-type
USP7_ICP0_bdg PF12436 267 - 439 3.1e-42 ICP0-binding domain of Ubiquitin-specific protease 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1462
AatII GACGTC 1 cut(s) 165
Acc36I ACCTGC 2 cut(s) 448, 1462
AccII CGCG 1 cut(s) 57
AciI CCGC 8 cut(s) 55, 169, 201, 205, 267, 811, 1161, 1323
AclWI GGATC 4 cut(s) 663, 708, 1007, 1128
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 2 cut(s) 1100, 1189
AcuI CTGAAG 1 cut(s) 752
AcvI CACGTG 1 cut(s) 391
AcyI GRCGYC 2 cut(s) 162, 740
AfaI GTAC 3 cut(s) 107, 792, 1314
AfeI AGCGCT 1 cut(s) 803
AfiI CCNNNNNNNGG 6 cut(s) 321, 328, 652, 757, 1141, 1216
AflIII ACRYGT 2 cut(s) 243, 390
AgsI TTSAA 2 cut(s) 595, 1157
AhlI ACTAGT 1 cut(s) 1469
AjiI CACGTC 1 cut(s) 211
AjnI CCWGG 4 cut(s) 279, 603, 844, 1116
AjuI GAANNNNNNNTTGG 4 cut(s) 921, 953, 1372, 1404
Alw21I GWGCWC 3 cut(s) 357, 390, 1179
Alw26I GTCTC 5 cut(s) 319, 494, 560, 731, 1218
AlwI GGATC 4 cut(s) 663, 708, 1007, 1128
AlwNI CAGNNNCTG 1 cut(s) 881
Ama87I CYCGRG 2 cut(s) 131, 645
Aor51HI AGCGCT 1 cut(s) 803
AoxI GGCC 2 cut(s) 294, 363
ApeKI GCWGC 1 cut(s) 413
ApoI RAATTY 2 cut(s) 1100, 1189
ArsI GACNNNNNNTTYG 4 cut(s) 671, 703, 1274, 1306
AspLEI GCGC 3 cut(s) 146, 345, 804
AspS9I GGNCC 2 cut(s) 295, 539
AsuC2I CCSGG 1 cut(s) 322
AsuHPI GGTGA 2 cut(s) 190, 577
AvaI CYCGRG 2 cut(s) 131, 645
AvaII GGWCC 1 cut(s) 539
BanII GRGCYC 3 cut(s) 138, 226, 1179
BbrPI CACGTG 1 cut(s) 391
Bbv12I GWGCWC 3 cut(s) 357, 390, 1179
BbvI GCAGC 1 cut(s) 400
BccI CCATC 3 cut(s) 394, 530, 1214
BceAI ACGGC 2 cut(s) 309, 1148
BciT130I CCWGG 4 cut(s) 281, 605, 846, 1118
BciVI GTATCC 1 cut(s) 1287
BcnI CCSGG 1 cut(s) 322
BcoDI GTCTC 5 cut(s) 319, 494, 560, 731, 1218
BcuI ACTAGT 1 cut(s) 1469
BfaI CTAG 5 cut(s) 422, 659, 1386, 1445, 1470
BfoI RGCGCY 2 cut(s) 346, 805
BfuAI ACCTGC 2 cut(s) 448, 1462
BfuI GTATCC 1 cut(s) 1287
BglII AGATCT 1 cut(s) 1382
BisI GCNGC 1 cut(s) 414
BlsI GCNGC 1 cut(s) 415
Bme1390I CCNGG 5 cut(s) 281, 322, 605, 846, 1118
Bme18I GGWCC 1 cut(s) 539
BmeT110I CYCGRG 2 cut(s) 131, 645
BmgBI CACGTC 1 cut(s) 211
BmgT120I GGNCC 2 cut(s) 295, 539
BmiI GGNNCC 4 cut(s) 120, 185, 223, 406
BmrFI CCNGG 5 cut(s) 281, 322, 605, 846, 1118
BmrI ACTGGG 1 cut(s) 1340
BmsI GCATC 1 cut(s) 456
BmuI ACTGGG 1 cut(s) 1340
BpmI CTGGAG 2 cut(s) 82, 1236
BpuEI CTTGAG 1 cut(s) 1235
BpuMI CCSGG 1 cut(s) 322
BsaAI YACGTR 2 cut(s) 244, 391
BsaHI GRCGYC 2 cut(s) 162, 740
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 6 cut(s) 217, 366, 408, 844, 1116, 1332
BsaWI WCCGGW 1 cut(s) 1272
BsaXI ACNNNNNCTCC 4 cut(s) 426, 456, 1215, 1245
Bsc4I CCNNNNNNNGG 6 cut(s) 321, 328, 652, 757, 1141, 1216
Bse1I ACTGG 8 cut(s) 65, 333, 788, 812, 901, 1253, 1288, 1346
Bse3DI GCAATG 1 cut(s) 1464
BseBI CCWGG 4 cut(s) 281, 605, 846, 1118
BseDI CCNNGG 6 cut(s) 217, 366, 408, 844, 1116, 1332
BseGI GGATG 5 cut(s) 213, 502, 535, 822, 1225
BseLI CCNNNNNNNGG 6 cut(s) 321, 328, 652, 757, 1141, 1216
BseMI GCAATG 1 cut(s) 1464
BseMII CTCAG 2 cut(s) 167, 1075
BseNI ACTGG 8 cut(s) 65, 333, 788, 812, 901, 1253, 1288, 1346
BseRI GAGGAG 4 cut(s) 176, 464, 665, 776
BseXI GCAGC 1 cut(s) 400
BseYI CCCAGC 2 cut(s) 416, 1488
BsgI GTGCAG 1 cut(s) 212
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 2 cut(s) 296, 365
BsiHKAI GWGCWC 3 cut(s) 357, 390, 1179
BsiHKCI CYCGRG 2 cut(s) 131, 645
BsiSI CCGG 3 cut(s) 322, 485, 1273
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 6 cut(s) 321, 328, 652, 757, 1141, 1216
BsmAI GTCTC 5 cut(s) 319, 494, 560, 731, 1218
BsmBI CGTCTC 2 cut(s) 494, 731
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 2 cut(s) 296, 365
Bso31I GGTCTC 1 cut(s) 560
BsoBI CYCGRG 2 cut(s) 131, 645
Bsp1286I GDGCHC 5 cut(s) 138, 226, 357, 390, 1179
Bsp143I GATC 6 cut(s) 655, 700, 1012, 1120, 1128, 1382
Bsp19I CCATGG 1 cut(s) 408
BspACI CCGC 8 cut(s) 55, 169, 201, 205, 267, 811, 1161, 1323
BspANI GGCC 2 cut(s) 296, 365
BspCNI CTCAG 2 cut(s) 166, 1074
BspFNI CGCG 1 cut(s) 57
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 4 cut(s) 120, 185, 223, 406
BspMI ACCTGC 2 cut(s) 448, 1462
BspPI GGATC 4 cut(s) 663, 708, 1007, 1128
BspQI GCTCTTC 2 cut(s) 1020, 1488
BspTNI GGTCTC 1 cut(s) 560
BsrDI GCAATG 1 cut(s) 1464
BsrI ACTGG 8 cut(s) 65, 333, 788, 812, 901, 1253, 1288, 1346
BssECI CCNNGG 6 cut(s) 217, 366, 408, 844, 1116, 1332
BssMI GATC 6 cut(s) 655, 700, 1012, 1120, 1128, 1382
BssNI GRCGYC 2 cut(s) 162, 740
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 4 cut(s) 281, 605, 846, 1118
Bst4CI ACNGT 1 cut(s) 877
Bst6I CTCTTC 5 cut(s) 1001, 1020, 1363, 1369, 1488
BstACI GRCGYC 2 cut(s) 162, 740
BstBAI YACGTR 2 cut(s) 244, 391
BstC8I GCNNGC 8 cut(s) 169, 205, 271, 482, 642, 1108, 1207, 1211
BstDEI CTNAG 3 cut(s) 153, 925, 1061
BstDSI CCRYGG 1 cut(s) 408
BstENI CCTNNNNNAGG 1 cut(s) 1139
BstF5I GGATG 5 cut(s) 213, 502, 535, 822, 1225
BstFNI CGCG 1 cut(s) 57
BstH2I RGCGCY 2 cut(s) 346, 805
BstHHI GCGC 3 cut(s) 146, 345, 804
BstKTI GATC 6 cut(s) 658, 703, 1015, 1123, 1131, 1385
BstMAI GTCTC 5 cut(s) 319, 494, 560, 731, 1218
BstMBI GATC 6 cut(s) 655, 700, 1012, 1120, 1128, 1382
BstMWI GCNNNNNNNGC 3 cut(s) 293, 808, 1112
BstNI CCWGG 4 cut(s) 281, 605, 846, 1118
BstSCI CCNGG 5 cut(s) 279, 320, 603, 844, 1116
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 400
BstX2I RGATCY 2 cut(s) 655, 1382
BstYI RGATCY 2 cut(s) 655, 1382
BsuI GTATCC 1 cut(s) 1287
BsuRI GGCC 2 cut(s) 296, 365
BtgI CCRYGG 1 cut(s) 408
BtrI CACGTC 1 cut(s) 211
BtsCI GGATG 5 cut(s) 213, 502, 535, 822, 1225
BtsIMutI CAGTG 1 cut(s) 1069
BveI ACCTGC 2 cut(s) 448, 1462
Cac8I GCNNGC 8 cut(s) 169, 205, 271, 482, 642, 1108, 1207, 1211
CaiI CAGNNNCTG 1 cut(s) 881
CciI TCATGA 1 cut(s) 703
CfoI GCGC 3 cut(s) 146, 345, 804
Cfr13I GGNCC 2 cut(s) 295, 539
CseI GACGC 2 cut(s) 748, 812
Csp6I GTAC 3 cut(s) 106, 791, 1313
CspCI CAANNNNNGTGG 2 cut(s) 1045, 1080
CviAII CATG 7 cut(s) 316, 349, 409, 526, 704, 973, 1168
CviQI GTAC 3 cut(s) 106, 791, 1313
DdeI CTNAG 3 cut(s) 153, 925, 1061
DpnI GATC 6 cut(s) 657, 702, 1014, 1122, 1130, 1384
DpnII GATC 6 cut(s) 655, 700, 1012, 1120, 1128, 1382
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 5 cut(s) 1001, 1020, 1363, 1369, 1488
EarI CTCTTC 5 cut(s) 1001, 1020, 1363, 1369, 1488
Ecl136II GAGCTC 1 cut(s) 1177
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 3 cut(s) 138, 226, 1179
Eco31I GGTCTC 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 539
Eco47III AGCGCT 1 cut(s) 803
Eco53kI GAGCTC 1 cut(s) 1177
Eco57I CTGAAG 1 cut(s) 752
Eco72I CACGTG 1 cut(s) 391
Eco88I CYCGRG 2 cut(s) 131, 645
EcoICRI GAGCTC 1 cut(s) 1177
EcoNI CCTNNNNNAGG 1 cut(s) 1139
EcoRII CCWGG 4 cut(s) 279, 603, 844, 1116
EcoT14I CCWWGG 1 cut(s) 408
EcoT38I GRGCYC 3 cut(s) 138, 226, 1179
ErhI CCWWGG 1 cut(s) 408
Esp3I CGTCTC 2 cut(s) 494, 731
FaeI CATG 7 cut(s) 319, 352, 412, 529, 707, 976, 1171
FalI AAGNNNNNCTT 2 cut(s) 921, 953
FaqI GGGAC 1 cut(s) 304
FatI CATG 7 cut(s) 315, 348, 408, 525, 703, 972, 1167
FauI CCCGC 3 cut(s) 176, 212, 1168
Fnu4HI GCNGC 1 cut(s) 414
FokI GGATG 5 cut(s) 200, 509, 542, 829, 1232
FriOI GRGCYC 3 cut(s) 138, 226, 1179
Fsp4HI GCNGC 1 cut(s) 414
FspBI CTAG 5 cut(s) 422, 659, 1386, 1445, 1470
GlaI GCGC 3 cut(s) 145, 344, 803
GluI GCNGC 1 cut(s) 414
GsaI CCCAGC 2 cut(s) 420, 1492
GsuI CTGGAG 2 cut(s) 82, 1236
HaeII RGCGCY 2 cut(s) 346, 805
HaeIII GGCC 2 cut(s) 296, 365
HapII CCGG 3 cut(s) 322, 485, 1273
HgaI GACGC 2 cut(s) 748, 812
HhaI GCGC 3 cut(s) 146, 345, 804
Hin1I GRCGYC 2 cut(s) 162, 740
Hin1II CATG 7 cut(s) 319, 352, 412, 529, 707, 976, 1171
Hin6I GCGC 3 cut(s) 144, 343, 802
HinP1I GCGC 3 cut(s) 144, 343, 802
HincII GTYRAC 2 cut(s) 894, 1057
HindII GTYRAC 2 cut(s) 894, 1057
HindIII AAGCTT 2 cut(s) 638, 1004
HinfI GANTC 3 cut(s) 33, 77, 1301
HpaII CCGG 3 cut(s) 322, 485, 1273
HphI GGTGA 2 cut(s) 190, 577
Hpy166II GTNNAC 7 cut(s) 7, 241, 523, 894, 916, 1057, 1070
Hpy188I TCNGA 9 cut(s) 156, 221, 291, 397, 448, 732, 910, 1242, 1333
Hpy188III TCNNGA 7 cut(s) 304, 542, 557, 704, 1016, 1124, 1298
Hpy8I GTNNAC 7 cut(s) 7, 241, 523, 894, 916, 1057, 1070
Hpy99I CGWCG 3 cut(s) 164, 167, 194
HpyAV CCTTC 4 cut(s) 727, 1038, 1407, 1419
HpyCH4III ACNGT 1 cut(s) 877
HpyCH4IV ACGT 7 cut(s) 108, 162, 210, 243, 390, 1033, 1315
HpyCH4V TGCA 5 cut(s) 229, 457, 1352, 1457, 1462
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 808, 1112
HpyF3I CTNAG 3 cut(s) 153, 925, 1061
HpySE526I ACGT 7 cut(s) 108, 162, 210, 243, 390, 1033, 1315
Hsp92I GRCGYC 2 cut(s) 162, 740
Hsp92II CATG 7 cut(s) 319, 352, 412, 529, 707, 976, 1171
HspAI GCGC 3 cut(s) 144, 343, 802
Kzo9I GATC 6 cut(s) 655, 700, 1012, 1120, 1128, 1382
LguI GCTCTTC 2 cut(s) 1020, 1488
LmnI GCTCC 7 cut(s) 189, 221, 278, 352, 664, 967, 1428
Lsp1109I GCAGC 1 cut(s) 400
LweI GCATC 1 cut(s) 456
MaeI CTAG 5 cut(s) 422, 659, 1386, 1445, 1470
MaeII ACGT 7 cut(s) 108, 162, 210, 243, 390, 1033, 1315
MaeIII GTNAC 1 cut(s) 1472
MalI GATC 6 cut(s) 657, 702, 1014, 1122, 1130, 1384
MboI GATC 6 cut(s) 655, 700, 1012, 1120, 1128, 1382
MboII GAAGA 8 cut(s) 607, 620, 983, 988, 1037, 1380, 1386, 1392
MflI RGATCY 2 cut(s) 655, 1382
MhlI GDGCHC 5 cut(s) 138, 226, 357, 390, 1179
MluCI AATT 6 cut(s) 49, 1091, 1100, 1146, 1189, 1260
MlyI GAGTC 3 cut(s) 27, 71, 1295
MmeI TCCRAC 2 cut(s) 375, 1021
MseI TTAA 5 cut(s) 756, 885, 1002, 1094, 1149
MslI CAYNNNNRTG 1 cut(s) 624
MspI CCGG 3 cut(s) 322, 485, 1273
MspR9I CCNGG 5 cut(s) 281, 322, 605, 846, 1118
MvaI CCWGG 4 cut(s) 281, 605, 846, 1118
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 3 cut(s) 293, 808, 1112
NciI CCSGG 1 cut(s) 322
NcoI CCATGG 1 cut(s) 408
NdeII GATC 6 cut(s) 655, 700, 1012, 1120, 1128, 1382
NlaIII CATG 7 cut(s) 319, 352, 412, 529, 707, 976, 1171
NlaIV GGNNCC 4 cut(s) 120, 185, 223, 406
NmeAIII GCCGAG 1 cut(s) 391
NmuCI GTSAC 1 cut(s) 1472
PagI TCATGA 1 cut(s) 703
PaqCI CACCTGC 1 cut(s) 1462
PciSI GCTCTTC 2 cut(s) 1020, 1488
PflFI GACNNNGTC 2 cut(s) 80, 1229
PfoI TCCNGGA 2 cut(s) 279, 320
PkrI GCNGC 1 cut(s) 415
PleI GAGTC 3 cut(s) 27, 71, 1295
PmaCI CACGTG 1 cut(s) 391
PmlI CACGTG 1 cut(s) 391
PpsI GAGTC 3 cut(s) 27, 71, 1295
Ppu21I YACGTR 2 cut(s) 244, 391
Psp124BI GAGCTC 1 cut(s) 1179
Psp6I CCWGG 4 cut(s) 279, 603, 844, 1116
PspCI CACGTG 1 cut(s) 391
PspFI CCCAGC 2 cut(s) 416, 1488
PspGI CCWGG 4 cut(s) 279, 603, 844, 1116
PspN4I GGNNCC 4 cut(s) 120, 185, 223, 406
PspPI GGNCC 2 cut(s) 295, 539
PstNI CAGNNNCTG 1 cut(s) 881
PsuI RGATCY 2 cut(s) 655, 1382
PsyI GACNNNGTC 2 cut(s) 80, 1229
RsaI GTAC 3 cut(s) 107, 792, 1314
RsaNI GTAC 3 cut(s) 106, 791, 1313
RseI CAYNNNNRTG 1 cut(s) 624
SacI GAGCTC 1 cut(s) 1179
SapI GCTCTTC 2 cut(s) 1020, 1488
SaqAI TTAA 5 cut(s) 756, 885, 1002, 1094, 1149
SatI GCNGC 1 cut(s) 414
Sau3AI GATC 6 cut(s) 655, 700, 1012, 1120, 1128, 1382
Sau96I GGNCC 2 cut(s) 295, 539
SchI GAGTC 3 cut(s) 27, 71, 1295
ScrFI CCNGG 5 cut(s) 281, 322, 605, 846, 1118
SduI GDGCHC 5 cut(s) 138, 226, 357, 390, 1179
SfaNI GCATC 1 cut(s) 456
SinI GGWCC 1 cut(s) 539
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 1 cut(s) 1214
SmoI CTYRAG 1 cut(s) 1214
SpeI ACTAGT 1 cut(s) 1469
Sse9I AATT 6 cut(s) 49, 1091, 1100, 1146, 1189, 1260
SsiI CCGC 8 cut(s) 55, 169, 201, 205, 267, 811, 1161, 1323
SspMI CTAG 5 cut(s) 422, 659, 1386, 1445, 1470
SstI GAGCTC 1 cut(s) 1179
StyD4I CCNGG 5 cut(s) 279, 320, 603, 844, 1116
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 877
TaiI ACGT 7 cut(s) 111, 165, 213, 246, 393, 1036, 1318
TaqI TCGA 8 cut(s) 36, 75, 87, 189, 558, 1088, 1131, 1201
TasI AATT 6 cut(s) 49, 1091, 1100, 1146, 1189, 1260
TatI WGTACW 1 cut(s) 790
Tru1I TTAA 5 cut(s) 756, 885, 1002, 1094, 1149
Tru9I TTAA 5 cut(s) 756, 885, 1002, 1094, 1149
TscAI CASTG 1 cut(s) 1069
TseFI GTSAC 1 cut(s) 1472
TseI GCWGC 1 cut(s) 413
Tsp45I GTSAC 1 cut(s) 1472
TspDTI ATGAA 4 cut(s) 488, 561, 720, 833
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 1069
Tth111I GACNNNGTC 2 cut(s) 80, 1229
VpaK11BI GGWCC 1 cut(s) 539
XagI CCTNNNNNAGG 1 cut(s) 1139
XapI RAATTY 2 cut(s) 1100, 1189
XcmI CCANNNNNNNNNTGG 2 cut(s) 277, 1217
XspI CTAG 5 cut(s) 422, 659, 1386, 1445, 1470
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.