Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000333

Physical Location & Seq

Genomic Coordinates Forward (+)

6390229 .. 6393154

Gene Structure 2926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1056200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGACAAAGTTCGTAGTTTCACTATTAAGAAACAAACAGCCTTTAATCTTTTCAAGGTATAGCAGTATAGGGTCTGGTTGCACTATAGTTTGGCATACCAATGCAATTTCAGCAGTTTTGGATTTAGGCCAAGAGGCAAAACCACACATATCCCCCATTCGACCATTGACACCCGAGGAACAATTAGAATCAGTCAAAAAATTGGAAGGTCTACCAAATAAAGAACACAAAAACTGCAAGCTAAAGTTATTTTTGGAAGTAGATCTTGGGCTGGACCAACGTCCTATTCCTCTGCCTGACAAAACCAAGGAATATATCCTGCTTTTCTTTAAGCTTTATGAACCTGAGAAACGAAAACTAAGTGAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203

Pfam Domains

Protein Families

MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

124

Amino Acids

14.13

Weight (kDa)

9.1

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
USP7_ICP0_bdg	PF12436	53 - 121	4.4e-07	ICP0-binding domain of Ubiquitin-specific protease 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca	FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica	MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica	Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis	pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis	RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata	RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora	Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa	Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha	Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana	Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	211
AgsI	TTSAA	1 cut(s)	54
AjuI	GAANNNNNNNTTGG	4 cut(s)	249, 270, 281, 302
AluBI	AGCT	2 cut(s)	241, 334
AluI	AGCT	2 cut(s)	241, 334
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	274
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	274
BfmI	CTRYAG	1 cut(s)	84
BglII	AGATCT	1 cut(s)	262
Bme18I	GGWCC	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	274
BoxI	GACNNNNGTC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	174, 306
BseDI	CCNNGG	2 cut(s)	174, 306
BseMII	CTCAG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	173
BsnI	GGCC	1 cut(s)	129
BsoBI	CYCGRG	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	262
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	174, 306
BssMI	GATC	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	2 cut(s)	345, 359
BstKTI	GATC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	262
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstPAI	GACNNNNGTC	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	274
CviJI	RGCY	5 cut(s)	40, 129, 241, 271, 334
CviKI_1	RGCY	5 cut(s)	40, 129, 241, 271, 334
DdeI	CTNAG	2 cut(s)	345, 359
DpnI	GATC	1 cut(s)	264
DpnII	GATC	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
FaiI	YATR	8 cut(s)	60, 68, 86, 96, 149, 315, 339, 370
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FblI	GTMKAC	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	212
Hpy8I	GTNNAC	1 cut(s)	212
HpyAV	CCTTC	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	3 cut(s)	81, 104, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	2 cut(s)	345, 359
HpySE526I	ACGT	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	262
LpnPI	CCDG	5 cut(s)	60, 257, 309, 332, 357
MaeII	ACGT	1 cut(s)	280
MalI	GATC	1 cut(s)	264
MboI	GATC	1 cut(s)	262
MflI	RGATCY	1 cut(s)	262
MluCI	AATT	3 cut(s)	105, 182, 200
MnlI	CCTC	3 cut(s)	127, 169, 300
MseI	TTAA	3 cut(s)	26, 44, 330
MslI	CAYNNNNRTG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	188
PshAI	GACNNNNGTC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	26, 44, 330
Sau3AI	GATC	1 cut(s)	262
Sau96I	GGNCC	1 cut(s)	274
SetI	ASST	6 cut(s)	59, 211, 243, 283, 336, 346
SfcI	CTRYAG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	3 cut(s)	105, 182, 200
StyI	CCWWGG	1 cut(s)	306
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	160
TasI	AATT	3 cut(s)	105, 182, 200
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	3 cut(s)	26, 44, 330
Tru9I	TTAA	3 cut(s)	26, 44, 330
TspDTI	ATGAA	1 cut(s)	354
VpaK11BI	GGWCC	1 cut(s)	274
XmiI	GTMKAC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.