Ubiquitin carboxyl-terminal hydrolase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MATH_2 | PF22486 | 56 - 165 | 8.7e-32 | MATH domain |
| MATH | PF00917 | 61 - 161 | 4.1e-13 | MATH domain |
| UCH | PF00443 | 186 - 507 | 1.6e-59 | Ubiquitin carboxyl-terminal hydrolase |
| UCH_1 | PF13423 | 186 - 461 | 1.9e-15 | Ubiquitin carboxyl-terminal hydrolase |
| USP7_ICP0_bdg | PF12436 | 611 - 863 | 3.8e-78 | ICP0-binding domain of Ubiquitin-specific protease 7 |
| USP7_C2 | PF14533 | 873 - 1083 | 1.1e-55 | Ubiquitin-specific protease C-terminal |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 2337 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 94 |
| AccBSI | CCGCTC | 1 cut(s) | 2984 |
| AccI | GTMKAC | 2 cut(s) | 2568, 2961 |
| AccII | CGCG | 1 cut(s) | 1505 |
| AciI | CCGC | 4 cut(s) | 314, 1448, 2323, 2982 |
| AclWI | GGATC | 6 cut(s) | 146, 294, 479, 1740, 2054, 2483 |
| AcoI | YGGCCR | 1 cut(s) | 3143 |
| AcsI | RAATTY | 7 cut(s) | 325, 1370, 1484, 2237, 3000, 3104, 3306 |
| AcuI | CTGAAG | 6 cut(s) | 683, 953, 1269, 1982, 2925, 3140 |
| AcyI | GRCGYC | 1 cut(s) | 2334 |
| AfeI | AGCGCT | 1 cut(s) | 3247 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 94, 1789, 2170, 2188, 2263, 2502 |
| AflII | CTTAAG | 1 cut(s) | 563 |
| AflIII | ACRYGT | 1 cut(s) | 1503 |
| AgeI | ACCGGT | 1 cut(s) | 142 |
| AjnI | CCWGG | 1 cut(s) | 1459 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1955, 1968, 1987, 2000, 2280, 2312 |
| AleI | CACNNNNGTG | 2 cut(s) | 1172, 1305 |
| Alw21I | GWGCWC | 4 cut(s) | 1626, 2361, 2744, 3237 |
| Alw26I | GTCTC | 6 cut(s) | 1158, 2265, 2372, 2793, 3041, 3178 |
| Alw44I | GTGCAC | 1 cut(s) | 2357 |
| AlwI | GGATC | 6 cut(s) | 146, 294, 479, 1740, 2054, 2483 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 610 |
| Ama87I | CYCGRG | 2 cut(s) | 1677, 2816 |
| Aor51HI | AGCGCT | 1 cut(s) | 3247 |
| AoxI | GGCC | 3 cut(s) | 60, 2250, 3143 |
| ApaLI | GTGCAC | 1 cut(s) | 2357 |
| ApeKI | GCWGC | 2 cut(s) | 796, 3266 |
| ApoI | RAATTY | 7 cut(s) | 325, 1370, 1484, 2237, 3000, 3104, 3306 |
| AseI | ATTAAT | 2 cut(s) | 924, 1182 |
| AsiGI | ACCGGT | 1 cut(s) | 142 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1967, 2910 |
| AspLEI | GCGC | 1 cut(s) | 3248 |
| AspS9I | GGNCC | 3 cut(s) | 1988, 2250, 2936 |
| AsuC2I | CCSGG | 2 cut(s) | 1678, 1679 |
| AsuHPI | GGTGA | 8 cut(s) | 77, 485, 890, 1186, 1236, 1445, 3056, 3313 |
| AvaI | CYCGRG | 2 cut(s) | 1677, 2816 |
| AvaII | GGWCC | 2 cut(s) | 1988, 2936 |
| BaeGI | GKGCMC | 2 cut(s) | 1414, 2361 |
| BanII | GRGCYC | 1 cut(s) | 2208 |
| Bbv12I | GWGCWC | 4 cut(s) | 1626, 2361, 2744, 3237 |
| BbvCI | CCTCAGC | 1 cut(s) | 2544 |
| BbvI | GCAGC | 2 cut(s) | 808, 3278 |
| BccI | CCATC | 7 cut(s) | 682, 765, 2234, 2261, 2347, 2500, 2694 |
| BceAI | ACGGC | 1 cut(s) | 2108 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 481, 515, 3114, 3148 |
| BciT130I | CCWGG | 1 cut(s) | 1461 |
| BciVI | GTATCC | 2 cut(s) | 769, 3066 |
| BclI | TGATCA | 3 cut(s) | 28, 1357, 2881 |
| BcnI | CCSGG | 2 cut(s) | 1678, 1679 |
| BcoDI | GTCTC | 6 cut(s) | 1158, 2265, 2372, 2793, 3041, 3178 |
| BfaI | CTAG | 4 cut(s) | 195, 3137, 3177, 3316 |
| BfmI | CTRYAG | 1 cut(s) | 602 |
| BfoI | RGCGCY | 1 cut(s) | 3249 |
| BfrI | CTTAAG | 1 cut(s) | 563 |
| BfuI | GTATCC | 2 cut(s) | 769, 3066 |
| BisI | GCNGC | 2 cut(s) | 797, 3267 |
| BlsI | GCNGC | 2 cut(s) | 798, 3268 |
| BmcAI | AGTACT | 1 cut(s) | 2110 |
| Bme1390I | CCNGG | 3 cut(s) | 1461, 1678, 1679 |
| Bme18I | GGWCC | 2 cut(s) | 1988, 2936 |
| BmeT110I | CYCGRG | 2 cut(s) | 1677, 2816 |
| BmgT120I | GGNCC | 3 cut(s) | 1988, 2250, 2936 |
| BmiI | GGNNCC | 4 cut(s) | 874, 2913, 3018, 3185 |
| BmrFI | CCNGG | 3 cut(s) | 1461, 1678, 1679 |
| BmsI | GCATC | 4 cut(s) | 39, 1072, 1761, 2788 |
| BpmI | CTGGAG | 5 cut(s) | 704, 860, 1436, 1715, 3251 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1803, 2544 |
| BpuEI | CTTGAG | 2 cut(s) | 1058, 2282 |
| BpuMI | CCSGG | 2 cut(s) | 1678, 1679 |
| Bsa29I | ATCGAT | 1 cut(s) | 2229 |
| BsaAI | YACGTR | 2 cut(s) | 1526, 2900 |
| BsaHI | GRCGYC | 1 cut(s) | 2334 |
| BsaI | GGTCTC | 1 cut(s) | 3041 |
| BsaJI | CCNNGG | 9 cut(s) | 63, 93, 270, 571, 1170, 1459, 1677, 2697, 3051 |
| BsaWI | WCCGGW | 3 cut(s) | 142, 1990, 2299 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1409, 1439, 2262, 2292 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 94, 1789, 2170, 2188, 2263, 2502 |
| Bse118I | RCCGGY | 2 cut(s) | 142, 3298 |
| Bse1I | ACTGG | 7 cut(s) | 721, 843, 1419, 1820, 2116, 2294, 2894 |
| Bse3DI | GCAATG | 2 cut(s) | 1561, 1572 |
| BseBI | CCWGG | 1 cut(s) | 1461 |
| BseCI | ATCGAT | 1 cut(s) | 2229 |
| BseDI | CCNNGG | 9 cut(s) | 63, 93, 270, 571, 1170, 1459, 1677, 2697, 3051 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 94, 1789, 2170, 2188, 2263, 2502 |
| BseMI | GCAATG | 2 cut(s) | 1561, 1572 |
| BseMII | CTCAG | 4 cut(s) | 651, 2558, 2798, 2999 |
| BseNI | ACTGG | 7 cut(s) | 721, 843, 1419, 1820, 2116, 2294, 2894 |
| BseRI | GAGGAG | 4 cut(s) | 59, 1433, 1808, 2186 |
| BseSI | GKGCMC | 2 cut(s) | 1414, 2361 |
| BseXI | GCAGC | 2 cut(s) | 808, 3278 |
| BseYI | CCCAGC | 2 cut(s) | 488, 2529 |
| Bsh1236I | CGCG | 1 cut(s) | 1505 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2387 |
| BshFI | GGCC | 3 cut(s) | 62, 2252, 3145 |
| BshTI | ACCGGT | 1 cut(s) | 142 |
| BshVI | ATCGAT | 1 cut(s) | 2229 |
| BsiEI | CGRYCG | 1 cut(s) | 2387 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1626, 2361, 2744, 3237 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1677, 2816 |
| BsiSI | CCGG | 6 cut(s) | 59, 143, 1678, 1991, 2300, 3299 |
| BslFI | GGGAC | 2 cut(s) | 1694, 2321 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 94, 1789, 2170, 2188, 2263, 2502 |
| BsmAI | GTCTC | 6 cut(s) | 1158, 2265, 2372, 2793, 3041, 3178 |
| BsmBI | CGTCTC | 2 cut(s) | 2372, 3178 |
| BsmFI | GGGAC | 2 cut(s) | 1694, 2321 |
| BsmI | GAATGC | 3 cut(s) | 923, 1815, 2681 |
| BsnI | GGCC | 3 cut(s) | 62, 2252, 3145 |
| Bso31I | GGTCTC | 1 cut(s) | 3041 |
| BsoBI | CYCGRG | 2 cut(s) | 1677, 2816 |
| Bsp1286I | GDGCHC | 6 cut(s) | 1414, 1626, 2208, 2361, 2744, 3237 |
| Bsp1407I | TGTACA | 1 cut(s) | 1518 |
| Bsp19I | CCATGG | 2 cut(s) | 93, 1170 |
| BspACI | CCGC | 4 cut(s) | 314, 1448, 2323, 2982 |
| BspANI | GGCC | 3 cut(s) | 62, 2252, 3145 |
| BspCNI | CTCAG | 4 cut(s) | 652, 2557, 2799, 2998 |
| BspDI | ATCGAT | 1 cut(s) | 2229 |
| BspFNI | CGCG | 1 cut(s) | 1505 |
| BspHI | TCATGA | 2 cut(s) | 9, 1735 |
| BspLI | GGNNCC | 4 cut(s) | 874, 2913, 3018, 3185 |
| BspMAI | CTGCAG | 1 cut(s) | 606 |
| BspPI | GGATC | 6 cut(s) | 146, 294, 479, 1740, 2054, 2483 |
| BspQI | GCTCTTC | 1 cut(s) | 702 |
| BspTI | CTTAAG | 1 cut(s) | 563 |
| BspTNI | GGTCTC | 1 cut(s) | 3041 |
| BsrBI | CCGCTC | 1 cut(s) | 2984 |
| BsrDI | GCAATG | 2 cut(s) | 1561, 1572 |
| BsrFI | RCCGGY | 2 cut(s) | 142, 3298 |
| BsrGI | TGTACA | 1 cut(s) | 1518 |
| BsrI | ACTGG | 7 cut(s) | 721, 843, 1419, 1820, 2116, 2294, 2894 |
| BssAI | RCCGGY | 2 cut(s) | 142, 3298 |
| BssECI | CCNNGG | 9 cut(s) | 63, 93, 270, 571, 1170, 1459, 1677, 2697, 3051 |
| BssNI | GRCGYC | 1 cut(s) | 2334 |
| BssT1I | CCWWGG | 6 cut(s) | 93, 270, 571, 1170, 2697, 3051 |
| Bst2UI | CCWGG | 1 cut(s) | 1461 |
| Bst6I | CTCTTC | 7 cut(s) | 702, 1106, 1434, 2099, 2901, 2916, 3187 |
| BstACI | GRCGYC | 1 cut(s) | 2334 |
| BstAFI | CTTAAG | 1 cut(s) | 563 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 805 |
| BstAUI | TGTACA | 1 cut(s) | 1518 |
| BstBAI | YACGTR | 2 cut(s) | 1526, 2900 |
| BstC8I | GCNNGC | 4 cut(s) | 2121, 2155, 2254, 2258 |
| BstDEI | CTNAG | 8 cut(s) | 660, 1086, 1803, 2419, 2544, 2775, 2807, 2985 |
| BstDSI | CCRYGG | 2 cut(s) | 93, 1170 |
| BstEII | GGTNACC | 1 cut(s) | 896 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1787, 2186 |
| BstFNI | CGCG | 1 cut(s) | 1505 |
| BstH2I | RGCGCY | 1 cut(s) | 3249 |
| BstHHI | GCGC | 1 cut(s) | 3248 |
| BstMAI | GTCTC | 6 cut(s) | 1158, 2265, 2372, 2793, 3041, 3178 |
| BstMCI | CGRYCG | 1 cut(s) | 2387 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 805, 2159, 3142, 3266 |
| BstNI | CCWGG | 1 cut(s) | 1461 |
| BstNSI | RCATGY | 1 cut(s) | 1513 |
| BstPI | GGTNACC | 1 cut(s) | 896 |
| BstSCI | CCNGG | 3 cut(s) | 1459, 1676, 1677 |
| BstSFI | CTRYAG | 1 cut(s) | 602 |
| BstSLI | GKGCMC | 2 cut(s) | 1414, 2361 |
| BstUI | CGCG | 1 cut(s) | 1505 |
| BstV1I | GCAGC | 2 cut(s) | 808, 3278 |
| BstX2I | RGATCY | 1 cut(s) | 151 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 339 |
| BstYI | RGATCY | 1 cut(s) | 151 |
| Bsu15I | ATCGAT | 1 cut(s) | 2229 |
| BsuI | GTATCC | 2 cut(s) | 769, 3066 |
| BsuRI | GGCC | 3 cut(s) | 62, 2252, 3145 |
| BsuTUI | ATCGAT | 1 cut(s) | 2229 |
| BtgI | CCRYGG | 2 cut(s) | 93, 1170 |
| BtsIMutI | CAGTG | 9 cut(s) | 733, 1294, 1309, 1367, 1412, 1827, 2208, 2742, 3162 |
| Cac8I | GCNNGC | 4 cut(s) | 2121, 2155, 2254, 2258 |
| CaiI | CAGNNNCTG | 1 cut(s) | 610 |
| CciI | TCATGA | 2 cut(s) | 9, 1735 |
| CfoI | GCGC | 1 cut(s) | 3248 |
| Cfr10I | RCCGGY | 2 cut(s) | 142, 3298 |
| Cfr13I | GGNCC | 3 cut(s) | 1988, 2250, 2936 |
| Cfr9I | CCCGGG | 1 cut(s) | 1677 |
| ClaI | ATCGAT | 1 cut(s) | 2229 |
| CseI | GACGC | 2 cut(s) | 1357, 1844 |
| CspAI | ACCGGT | 1 cut(s) | 142 |
| DdeI | CTNAG | 8 cut(s) | 660, 1086, 1803, 2419, 2544, 2775, 2807, 2985 |
| EaeI | YGGCCR | 1 cut(s) | 3143 |
| Eam1104I | CTCTTC | 7 cut(s) | 702, 1106, 1434, 2099, 2901, 2916, 3187 |
| EarI | CTCTTC | 7 cut(s) | 702, 1106, 1434, 2099, 2901, 2916, 3187 |
| Eco130I | CCWWGG | 6 cut(s) | 93, 270, 571, 1170, 2697, 3051 |
| Eco24I | GRGCYC | 1 cut(s) | 2208 |
| Eco31I | GGTCTC | 1 cut(s) | 3041 |
| Eco47I | GGWCC | 2 cut(s) | 1988, 2936 |
| Eco47III | AGCGCT | 1 cut(s) | 3247 |
| Eco57I | CTGAAG | 6 cut(s) | 683, 953, 1269, 1982, 2925, 3140 |
| Eco88I | CYCGRG | 2 cut(s) | 1677, 2816 |
| Eco91I | GGTNACC | 1 cut(s) | 896 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1787, 2186 |
| EcoO65I | GGTNACC | 1 cut(s) | 896 |
| EcoRII | CCWGG | 1 cut(s) | 1459 |
| EcoT14I | CCWWGG | 6 cut(s) | 93, 270, 571, 1170, 2697, 3051 |
| EcoT22I | ATGCAT | 1 cut(s) | 923 |
| EcoT38I | GRGCYC | 1 cut(s) | 2208 |
| ErhI | CCWWGG | 6 cut(s) | 93, 270, 571, 1170, 2697, 3051 |
| Esp3I | CGTCTC | 2 cut(s) | 2372, 3178 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1955, 1987 |
| FaqI | GGGAC | 2 cut(s) | 1694, 2321 |
| FauNDI | CATATG | 5 cut(s) | 334, 529, 648, 781, 903 |
| FbaI | TGATCA | 3 cut(s) | 28, 1357, 2881 |
| FblI | GTMKAC | 2 cut(s) | 2568, 2961 |
| Fnu4HI | GCNGC | 2 cut(s) | 797, 3267 |
| FriOI | GRGCYC | 1 cut(s) | 2208 |
| Fsp4HI | GCNGC | 2 cut(s) | 797, 3267 |
| FspBI | CTAG | 4 cut(s) | 195, 3137, 3177, 3316 |
| GlaI | GCGC | 1 cut(s) | 3247 |
| GluI | GCNGC | 2 cut(s) | 797, 3267 |
| GsaI | CCCAGC | 2 cut(s) | 492, 2533 |
| GsuI | CTGGAG | 5 cut(s) | 704, 860, 1436, 1715, 3251 |
| HaeII | RGCGCY | 1 cut(s) | 3249 |
| HaeIII | GGCC | 3 cut(s) | 62, 2252, 3145 |
| HapII | CCGG | 6 cut(s) | 59, 143, 1678, 1991, 2300, 3299 |
| HgaI | GACGC | 2 cut(s) | 1357, 1844 |
| HhaI | GCGC | 1 cut(s) | 3248 |
| Hin1I | GRCGYC | 1 cut(s) | 2334 |
| Hin6I | GCGC | 1 cut(s) | 3246 |
| HinP1I | GCGC | 1 cut(s) | 3246 |
| HindIII | AAGCTT | 2 cut(s) | 212, 2051 |
| HinfI | GANTC | 9 cut(s) | 168, 317, 533, 607, 703, 785, 953, 2989, 3277 |
| HpaII | CCGG | 6 cut(s) | 59, 143, 1678, 1991, 2300, 3299 |
| HphI | GGTGA | 8 cut(s) | 77, 485, 890, 1186, 1236, 1445, 3056, 3313 |
| Hpy99I | CGWCG | 1 cut(s) | 1351 |
| HpyAV | CCTTC | 9 cut(s) | 168, 535, 847, 887, 977, 1561, 1700, 1702, 3035 |
| HpyCH4IV | ACGT | 6 cut(s) | 1033, 1525, 2080, 2334, 2894, 2899 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 805, 2159, 3142, 3266 |
| HpyF3I | CTNAG | 8 cut(s) | 660, 1086, 1803, 2419, 2544, 2775, 2807, 2985 |
| HpySE526I | ACGT | 6 cut(s) | 1033, 1525, 2080, 2334, 2894, 2899 |
| Hsp92I | GRCGYC | 1 cut(s) | 2334 |
| HspAI | GCGC | 1 cut(s) | 3246 |
| Ksp22I | TGATCA | 3 cut(s) | 28, 1357, 2881 |
| LguI | GCTCTTC | 1 cut(s) | 702 |
| LmnI | GCTCC | 9 cut(s) | 575, 1420, 1621, 1696, 2014, 2458, 3214, 3232, 3253 |
| Lsp1109I | GCAGC | 2 cut(s) | 808, 3278 |
| LweI | GCATC | 4 cut(s) | 39, 1072, 1761, 2788 |
| MaeI | CTAG | 4 cut(s) | 195, 3137, 3177, 3316 |
| MaeII | ACGT | 6 cut(s) | 1033, 1525, 2080, 2334, 2894, 2899 |
| MaeIII | GTNAC | 6 cut(s) | 896, 1387, 1443, 1532, 2522, 2895 |
| MbiI | CCGCTC | 1 cut(s) | 2984 |
| MflI | RGATCY | 1 cut(s) | 151 |
| MhlI | GDGCHC | 6 cut(s) | 1414, 1626, 2208, 2361, 2744, 3237 |
| MluI | ACGCGT | 1 cut(s) | 1503 |
| MlyI | GAGTC | 4 cut(s) | 527, 601, 712, 962 |
| MmeI | TCCRAC | 2 cut(s) | 2068, 3050 |
| Mph1103I | ATGCAT | 1 cut(s) | 923 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1967, 2910 |
| MspA1I | CMGCKG | 1 cut(s) | 2123 |
| MspCI | CTTAAG | 1 cut(s) | 563 |
| MspI | CCGG | 6 cut(s) | 59, 143, 1678, 1991, 2300, 3299 |
| MspR9I | CCNGG | 3 cut(s) | 1461, 1678, 1679 |
| Mva1269I | GAATGC | 3 cut(s) | 923, 1815, 2681 |
| MvaI | CCWGG | 1 cut(s) | 1461 |
| MvnI | CGCG | 1 cut(s) | 1505 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 805, 2159, 3142, 3266 |
| NciI | CCSGG | 2 cut(s) | 1678, 1679 |
| NcoI | CCATGG | 2 cut(s) | 93, 1170 |
| NdeI | CATATG | 5 cut(s) | 334, 529, 648, 781, 903 |
| NlaIV | GGNNCC | 4 cut(s) | 874, 2913, 3018, 3185 |
| NmuCI | GTSAC | 2 cut(s) | 896, 1532 |
| NsiI | ATGCAT | 1 cut(s) | 923 |
| NspI | RCATGY | 1 cut(s) | 1513 |
| OliI | CACNNNNGTG | 2 cut(s) | 1172, 1305 |
| PaeR7I | CTCGAG | 1 cut(s) | 2816 |
| PagI | TCATGA | 2 cut(s) | 9, 1735 |
| PciSI | GCTCTTC | 1 cut(s) | 702 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1879, 2175, 2184 |
| PctI | GAATGC | 3 cut(s) | 923, 1815, 2681 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1967, 2910 |
| PfeI | GAWTC | 5 cut(s) | 168, 317, 785, 2989, 3277 |
| PflFI | GACNNNGTC | 3 cut(s) | 760, 1742, 3170 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 94 |
| PinAI | ACCGGT | 1 cut(s) | 142 |
| PkrI | GCNGC | 2 cut(s) | 798, 3268 |
| Ple19I | CGATCG | 1 cut(s) | 2387 |
| PleI | GAGTC | 4 cut(s) | 527, 601, 711, 961 |
| PpsI | GAGTC | 4 cut(s) | 527, 601, 711, 961 |
| Ppu21I | YACGTR | 2 cut(s) | 1526, 2900 |
| PshBI | ATTAAT | 2 cut(s) | 924, 1182 |
| Psp6I | CCWGG | 1 cut(s) | 1459 |
| PspEI | GGTNACC | 1 cut(s) | 896 |
| PspFI | CCCAGC | 2 cut(s) | 488, 2529 |
| PspGI | CCWGG | 1 cut(s) | 1459 |
| PspN4I | GGNNCC | 4 cut(s) | 874, 2913, 3018, 3185 |
| PspPI | GGNCC | 3 cut(s) | 1988, 2250, 2936 |
| PspXI | VCTCGAGB | 1 cut(s) | 2816 |
| PstI | CTGCAG | 1 cut(s) | 606 |
| PstNI | CAGNNNCTG | 1 cut(s) | 610 |
| PsuI | RGATCY | 1 cut(s) | 151 |
| PsyI | GACNNNGTC | 3 cut(s) | 760, 1742, 3170 |
| PvuI | CGATCG | 1 cut(s) | 2387 |
| PvuII | CAGCTG | 1 cut(s) | 2123 |
| SapI | GCTCTTC | 1 cut(s) | 702 |
| SatI | GCNGC | 2 cut(s) | 797, 3267 |
| Sau96I | GGNCC | 3 cut(s) | 1988, 2250, 2936 |
| ScaI | AGTACT | 1 cut(s) | 2110 |
| SchI | GAGTC | 4 cut(s) | 527, 601, 712, 962 |
| ScrFI | CCNGG | 3 cut(s) | 1461, 1678, 1679 |
| SduI | GDGCHC | 6 cut(s) | 1414, 1626, 2208, 2361, 2744, 3237 |
| SfaNI | GCATC | 4 cut(s) | 39, 1072, 1761, 2788 |
| SfcI | CTRYAG | 1 cut(s) | 602 |
| Sfr274I | CTCGAG | 1 cut(s) | 2816 |
| SinI | GGWCC | 2 cut(s) | 1988, 2936 |
| SlaI | CTCGAG | 1 cut(s) | 2816 |
| SmaI | CCCGGG | 1 cut(s) | 1679 |
| SmlI | CTYRAG | 4 cut(s) | 563, 1037, 2261, 2816 |
| SmoI | CTYRAG | 4 cut(s) | 563, 1037, 2261, 2816 |
| SsiI | CCGC | 4 cut(s) | 314, 1448, 2323, 2982 |
| SspI | AATATT | 1 cut(s) | 1238 |
| SspMI | CTAG | 4 cut(s) | 195, 3137, 3177, 3316 |
| StyD4I | CCNGG | 3 cut(s) | 1459, 1676, 1677 |
| StyI | CCWWGG | 6 cut(s) | 93, 270, 571, 1170, 2697, 3051 |
| TaiI | ACGT | 6 cut(s) | 1036, 1528, 2083, 2337, 2897, 2902 |
| TaqII | GACCGA | 1 cut(s) | 1360 |
| TatI | WGTACW | 4 cut(s) | 723, 1518, 2108, 2619 |
| TfiI | GAWTC | 5 cut(s) | 168, 317, 785, 2989, 3277 |
| TscAI | CASTG | 9 cut(s) | 733, 1294, 1309, 1367, 1419, 1827, 2215, 2749, 3169 |
| TseFI | GTSAC | 2 cut(s) | 896, 1532 |
| TseI | GCWGC | 2 cut(s) | 796, 3266 |
| Tsp45I | GTSAC | 2 cut(s) | 896, 1532 |
| TspMI | CCCGGG | 1 cut(s) | 1677 |
| TspRI | CASTG | 9 cut(s) | 733, 1294, 1309, 1367, 1419, 1827, 2215, 2749, 3169 |
| Tth111I | GACNNNGTC | 3 cut(s) | 760, 1742, 3170 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 94 |
| Vha464I | CTTAAG | 1 cut(s) | 563 |
| VneI | GTGCAC | 1 cut(s) | 2357 |
| VpaK11BI | GGWCC | 2 cut(s) | 1988, 2936 |
| VspI | ATTAAT | 2 cut(s) | 924, 1182 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1787, 2186 |
| XapI | RAATTY | 7 cut(s) | 325, 1370, 1484, 2237, 3000, 3104, 3306 |
| XceI | RCATGY | 1 cut(s) | 1513 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2264, 2704 |
| XhoI | CTCGAG | 1 cut(s) | 2816 |
| XmaI | CCCGGG | 1 cut(s) | 1677 |
| XmiI | GTMKAC | 2 cut(s) | 2568, 2961 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1967, 2910 |
| XspI | CTAG | 4 cut(s) | 195, 3137, 3177, 3316 |
| ZraI | GACGTC | 1 cut(s) | 2335 |
| ZrmI | AGTACT | 1 cut(s) | 2110 |
| Zsp2I | ATGCAT | 1 cut(s) | 923 |