Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000333

Physical Location & Seq

Genomic Coordinates Reverse (-)

5470402 .. 5473895

Gene Structure 3494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1048000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGTTGATTGTCTTTTGGCTGTACATCAGTGTCAACTAGAGCTAATGATGACTCCTTGTGTTTTACAGGATGGACAACTTAGAGGGGTATCATGTCAGCACAGTGCGGAGCTAAAGTCGTTTTTGGAAGTAGAGTTTGGACCGGAATTAAAGTTTGAGCCTTTTGTCATGTGTGTAGACCTTGACAAGATGACCTCTTTCGAGTCGAGCCTGGTCTGTTGCTTTCTTCTCCAGATTGAAGATGGGGACATTATATGTTTTCAGAAATCTACTCCGCTTGAAATTGAGGGAGTCTCTCTATCCTTGCATTCCGTGTTAGATGGGGATTTACAGGTAAAGCGGTCTCATCCAAATGCAGAACTGCGACTGCTTGAGGTTCTCGATCACAAGATATACAAGATCTTCCCAAACAGTGAGAAAGTTGAGAATATTAATTACCAGTATCGGACTTTGCGTGCAAAGGAGGCAAGTTCTTTTGCCCCCTCTTCTTTATTTATTTTATGGGCAAGATTTGCTATTTGTTTGTTTTCCTTTTCCGGATCAACATCCCTTCTACTGTATAGGATTGAATTGGACTCATTGTACCAGTGTTCTTCATGCGGCTGTCTGTTTTTTTTTTTTTCCTTCTGTATCAGATTACAGAAGAAGAGAAAAAATTGGATCTCTAATCTCTATGATCGCTTGATTCATGTTTTCCACTTCACGAAAGTCGCTGTATTGAACCAGATGGTAGAAGAAAACTTTTTTATTACCGTTAAAGATGGTTTTACCCAAAAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203

Pfam Domains

Protein Families

MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

261

Amino Acids

29.98

Weight (kDa)

5.82

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca	FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica	MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica	Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis	pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis	RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata	RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora	Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa	Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha	Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana	Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AccIII	TCCGGA	1 cut(s)	536
AciI	CCGC	4 cut(s)	107, 275, 340, 600
AclWI	GGATC	2 cut(s)	547, 668
AfaI	GTAC	2 cut(s)	24, 584
AgsI	TTSAA	4 cut(s)	239, 281, 569, 721
AjnI	CCWGG	1 cut(s)	210
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	2 cut(s)	43, 112
AluI	AGCT	2 cut(s)	43, 112
Alw26I	GTCTC	2 cut(s)	298, 348
AlwI	GGATC	2 cut(s)	547, 668
Aor13HI	TCCGGA	1 cut(s)	536
AseI	ATTAAT	1 cut(s)	432
AspS9I	GGNCC	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	140
BccI	CCATC	5 cut(s)	65, 236, 314, 721, 755
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	2 cut(s)	298, 348
BfaI	CTAG	1 cut(s)	38
BglII	AGATCT	1 cut(s)	399
BisI	GCNGC	1 cut(s)	601
BlsI	GCNGC	1 cut(s)	602
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	140
BmrFI	CCNGG	1 cut(s)	212
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpmI	CTGGAG	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	544
BsaI	GGTCTC	1 cut(s)	348
BsaWI	WCCGGW	2 cut(s)	142, 536
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bse1I	ACTGG	2 cut(s)	439, 586
Bse8I	GATNNNNATC	1 cut(s)	544
BseAI	TCCGGA	1 cut(s)	536
BseBI	CCWGG	1 cut(s)	212
BseGI	GGATG	3 cut(s)	76, 346, 545
BseJI	GATNNNNATC	1 cut(s)	544
BseNI	ACTGG	2 cut(s)	439, 586
BsiSI	CCGG	2 cut(s)	143, 537
BslFI	GGGAC	1 cut(s)	260
BsmAI	GTCTC	2 cut(s)	298, 348
BsmFI	GGGAC	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	307
Bso31I	GGTCTC	1 cut(s)	348
Bsp13I	TCCGGA	1 cut(s)	536
Bsp1407I	TGTACA	1 cut(s)	22
Bsp143I	GATC	5 cut(s)	382, 399, 539, 660, 676
BspACI	CCGC	4 cut(s)	107, 275, 340, 600
BspEI	TCCGGA	1 cut(s)	536
BspPI	GGATC	2 cut(s)	547, 668
BspTNI	GGTCTC	1 cut(s)	348
BsrGI	TGTACA	1 cut(s)	22
BsrI	ACTGG	2 cut(s)	439, 586
BssMI	GATC	5 cut(s)	382, 399, 539, 660, 676
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	4 cut(s)	104, 413, 558, 754
Bst6I	CTCTTC	2 cut(s)	490, 641
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstAUI	TGTACA	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	3 cut(s)	76, 346, 545
BstKTI	GATC	5 cut(s)	385, 402, 542, 663, 679
BstMAI	GTCTC	2 cut(s)	298, 348
BstMBI	GATC	5 cut(s)	382, 399, 539, 660, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	464, 512
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstX2I	RGATCY	2 cut(s)	399, 660
BstYI	RGATCY	2 cut(s)	399, 660
BtsCI	GGATG	3 cut(s)	76, 346, 545
BtsIMutI	CAGTG	4 cut(s)	35, 109, 418, 593
Cac8I	GCNNGC	1 cut(s)	456
Cfr13I	GGNCC	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	23, 583
CviAII	CATG	4 cut(s)	93, 169, 597, 689
CviJI	RGCY	6 cut(s)	20, 43, 112, 160, 210, 603
CviKI_1	RGCY	6 cut(s)	20, 43, 112, 160, 210, 603
CviQI	GTAC	2 cut(s)	23, 583
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	5 cut(s)	384, 401, 541, 662, 678
DpnII	GATC	5 cut(s)	382, 399, 539, 660, 676
Eam1104I	CTCTTC	2 cut(s)	490, 641
EarI	CTCTTC	2 cut(s)	490, 641
Eco31I	GGTCTC	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	210
FaeI	CATG	4 cut(s)	96, 172, 600, 692
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	4 cut(s)	92, 168, 596, 688
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	601
FokI	GGATG	3 cut(s)	83, 333, 532
Fsp4HI	GCNGC	1 cut(s)	601
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	1 cut(s)	601
GsuI	CTGGAG	1 cut(s)	215
HapII	CCGG	2 cut(s)	143, 537
Hin1II	CATG	4 cut(s)	96, 172, 600, 692
HincII	GTYRAC	1 cut(s)	35
HindII	GTYRAC	1 cut(s)	35
HinfI	GANTC	5 cut(s)	52, 203, 291, 575, 685
HpaII	CCGG	2 cut(s)	143, 537
Hpy166II	GTNNAC	2 cut(s)	35, 178
Hpy188I	TCNGA	4 cut(s)	264, 447, 635, 782
Hpy188III	TCNNGA	4 cut(s)	232, 380, 537, 703
Hpy8I	GTNNAC	2 cut(s)	35, 178
HpyAV	CCTTC	2 cut(s)	560, 634
HpyCH4III	ACNGT	4 cut(s)	104, 413, 558, 754
HpyCH4V	TGCA	3 cut(s)	307, 356, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	464, 512
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	4 cut(s)	96, 172, 600, 692
Kpn2I	TCCGGA	1 cut(s)	536
Kzo9I	GATC	5 cut(s)	382, 399, 539, 660, 676
LmnI	GCTCC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	38
MalI	GATC	5 cut(s)	384, 401, 541, 662, 678
MboI	GATC	5 cut(s)	382, 399, 539, 660, 676
MboII	GAAGA	8 cut(s)	218, 251, 394, 477, 585, 655, 658, 746
MflI	RGATCY	2 cut(s)	399, 660
MluCI	AATT	5 cut(s)	146, 282, 433, 569, 655
MlyI	GAGTC	4 cut(s)	46, 212, 300, 569
MnlI	CCTC	6 cut(s)	77, 205, 280, 367, 457, 493
MroI	TCCGGA	1 cut(s)	536
MseI	TTAA	3 cut(s)	149, 432, 756
MslI	CAYNNNNRTG	1 cut(s)	351
MspI	CCGG	2 cut(s)	143, 537
MspR9I	CCNGG	1 cut(s)	212
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	2 cut(s)	464, 512
NdeII	GATC	5 cut(s)	382, 399, 539, 660, 676
NlaIII	CATG	4 cut(s)	96, 172, 600, 692
PcsI	WCGNNNNNNNCGW	1 cut(s)	451
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	685
PkrI	GCNGC	1 cut(s)	602
PleI	GAGTC	4 cut(s)	46, 211, 299, 569
PpsI	GAGTC	4 cut(s)	46, 211, 299, 569
PshBI	ATTAAT	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	140
PsuI	RGATCY	2 cut(s)	399, 660
RsaI	GTAC	2 cut(s)	24, 584
RsaNI	GTAC	2 cut(s)	23, 583
RseI	CAYNNNNRTG	1 cut(s)	351
SaqAI	TTAA	3 cut(s)	149, 432, 756
SatI	GCNGC	1 cut(s)	601
Sau3AI	GATC	5 cut(s)	382, 399, 539, 660, 676
Sau96I	GGNCC	1 cut(s)	140
SchI	GAGTC	4 cut(s)	46, 212, 300, 569
ScrFI	CCNGG	1 cut(s)	212
SetI	ASST	6 cut(s)	45, 114, 183, 197, 336, 378
SinI	GGWCC	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	5 cut(s)	146, 282, 433, 569, 655
SsiI	CCGC	4 cut(s)	107, 275, 340, 600
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	4 cut(s)	104, 413, 558, 754
TaqI	TCGA	3 cut(s)	201, 206, 381
TasI	AATT	5 cut(s)	146, 282, 433, 569, 655
TatI	WGTACW	1 cut(s)	22
TauI	GCSGC	1 cut(s)	603
TfiI	GAWTC	1 cut(s)	685
Tru1I	TTAA	3 cut(s)	149, 432, 756
Tru9I	TTAA	3 cut(s)	149, 432, 756
TscAI	CASTG	4 cut(s)	35, 109, 418, 593
TspDTI	ATGAA	2 cut(s)	585, 677
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	4 cut(s)	35, 109, 418, 593
VpaK11BI	GGWCC	1 cut(s)	140
VspI	ATTAAT	1 cut(s)	432
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.