Rroxscaffold_1G00055490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000333
Physical Location & Seq
Forward (+)
76944270 .. 76961352
17083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00055490.1

Sequence Viewer

Length: 606 bp
ATGGTGTCGATCCGTTTGTCAAGGTCGATGGTGTCGATCTCGTCCGAGGCGGGAAAGAATCACAAGAAAGAGCAAAAGCAATCTTCATCAACCCATCTCTCCCACCTCGAGGCCACCTCAAGGCACCGGACCACGTCCCACGCCTTCGCCTCTTCCTTGCCCACCTGCGGTGGTAGCCTTTCGCCGGCTCTTGAGCCGTACACGGCGGTGGAACACGAGGCCGGTTTGAGATATCAAGCTTGGAACCAAAACGAGCTCAAACAGCCTCGTGTTCCACCGCCGTGTACGGCTCAAGAGCTCGCCAAAGGCTACCACCGCATCCGGGCAAGGAAGAGGCGAAGGCGTGGGATGTGGTCCGTGTTTGGTAGAAGGCGTGATGTTAAATTGAGAAATTATAAACAGTTAGAAAGAGAATTAATCTCACTAACGCAAGATGATAAGAGTGTGAGAGATTATGTGACAGAATTCTCAAGGGCTAGGAGGCCGAGAAGCTACACAGCTCGAGCTGGAATTCACCGAGCTGCTCTTTCTTCACCGGTTGATATCTCTCTCATACGACCTCTAATCGAGTTGATTCCAAAAGGGATTTTGCTGGGCTTGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.84

Weight (kDa)

10.9

Isoelectric Point (pI)

67.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
AarI CACCTGC 1 cut(s) 173
AbsI CCTCGAGG 1 cut(s) 107
Acc36I ACCTGC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 123
AciI CCGC 5 cut(s) 50, 168, 206, 278, 316
AclWI GGATC 1 cut(s) 4
AcsI RAATTY 2 cut(s) 464, 510
AfaI GTAC 2 cut(s) 200, 286
AfiI CCNNNNNNNGG 5 cut(s) 109, 120, 167, 184, 322
AgeI ACCGGT 1 cut(s) 535
AjiI CACGTC 1 cut(s) 135
AleI CACNNNNGTG 2 cut(s) 206, 280
AluBI AGCT 8 cut(s) 239, 256, 298, 492, 500, 506, 521, 603
AluI AGCT 8 cut(s) 239, 256, 298, 492, 500, 506, 521, 603
Alw21I GWGCWC 2 cut(s) 258, 300
AlwI GGATC 1 cut(s) 4
Ama87I CYCGRG 2 cut(s) 107, 501
AoxI GGCC 3 cut(s) 111, 219, 482
ApeKI GCWGC 1 cut(s) 521
ApoI RAATTY 2 cut(s) 464, 510
AseI ATTAAT 1 cut(s) 416
AsiGI ACCGGT 1 cut(s) 535
AspS9I GGNCC 2 cut(s) 129, 354
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 2 cut(s) 506, 525
AvaI CYCGRG 2 cut(s) 107, 501
AvaII GGWCC 2 cut(s) 129, 354
BanI GGYRCC 1 cut(s) 123
BanII GRGCYC 2 cut(s) 258, 300
BauI CACGAG 2 cut(s) 215, 267
Bbv12I GWGCWC 2 cut(s) 258, 300
BbvI GCAGC 1 cut(s) 508
BccI CCATC 2 cut(s) 22, 102
BceAI ACGGC 4 cut(s) 181, 219, 265, 303
BcnI CCSGG 1 cut(s) 323
BfaI CTAG 2 cut(s) 477, 604
BfuAI ACCTGC 1 cut(s) 173
BisI GCNGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 523
Bme1390I CCNGG 1 cut(s) 323
Bme18I GGWCC 2 cut(s) 129, 354
BmeT110I CYCGRG 2 cut(s) 107, 501
BmgBI CACGTC 1 cut(s) 135
BmgT120I GGNCC 2 cut(s) 129, 354
BmiI GGNNCC 2 cut(s) 125, 245
BmrFI CCNGG 1 cut(s) 323
BmsI GCATC 1 cut(s) 327
BplI GAGNNNNNCTC 2 cut(s) 101, 133
BpuEI CTTGAG 4 cut(s) 103, 212, 276, 454
BpuMI CCSGG 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 45
BsaWI WCCGGW 2 cut(s) 126, 535
Bsc4I CCNNNNNNNGG 5 cut(s) 109, 120, 167, 184, 322
Bse118I RCCGGY 3 cut(s) 184, 221, 535
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 318, 354
BseLI CCNNNNNNNGG 5 cut(s) 109, 120, 167, 184, 322
BseXI GCAGC 1 cut(s) 508
BseYI CCCAGC 1 cut(s) 592
BshFI GGCC 3 cut(s) 113, 221, 484
BshNI GGYRCC 1 cut(s) 123
BshTI ACCGGT 1 cut(s) 535
BsiHKAI GWGCWC 2 cut(s) 258, 300
BsiHKCI CYCGRG 2 cut(s) 107, 501
BsiSI CCGG 5 cut(s) 127, 185, 222, 322, 536
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 5 cut(s) 109, 120, 167, 184, 322
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 3 cut(s) 113, 221, 484
BsoBI CYCGRG 2 cut(s) 107, 501
Bsp1286I GDGCHC 2 cut(s) 258, 300
Bsp143I GATC 2 cut(s) 9, 36
BspACI CCGC 5 cut(s) 50, 168, 206, 278, 316
BspANI GGCC 3 cut(s) 113, 221, 484
BspLI GGNNCC 2 cut(s) 125, 245
BspMI ACCTGC 1 cut(s) 173
BspPI GGATC 1 cut(s) 4
BspT107I GGYRCC 1 cut(s) 123
BsrFI RCCGGY 3 cut(s) 184, 221, 535
BssAI RCCGGY 3 cut(s) 184, 221, 535
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 2 cut(s) 9, 36
BssSI CACGAG 2 cut(s) 215, 267
Bst2BI CACGAG 2 cut(s) 215, 267
Bst4CI ACNGT 1 cut(s) 402
Bst6I CTCTTC 2 cut(s) 157, 326
BstC8I GCNNGC 2 cut(s) 186, 300
BstF5I GGATG 2 cut(s) 318, 354
BstKTI GATC 2 cut(s) 12, 39
BstMBI GATC 2 cut(s) 9, 36
BstMWI GCNNNNNNNGC 3 cut(s) 174, 262, 315
BstSCI CCNGG 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 508
BsuRI GGCC 3 cut(s) 113, 221, 484
BtrI CACGTC 1 cut(s) 135
BtsCI GGATG 2 cut(s) 318, 354
BveI ACCTGC 1 cut(s) 173
Cac8I GCNNGC 2 cut(s) 186, 300
Cfr10I RCCGGY 3 cut(s) 184, 221, 535
Cfr13I GGNCC 2 cut(s) 129, 354
Csp6I GTAC 2 cut(s) 199, 285
CspAI ACCGGT 1 cut(s) 535
CviQI GTAC 2 cut(s) 199, 285
DpnI GATC 2 cut(s) 11, 38
DpnII GATC 2 cut(s) 9, 36
Eam1104I CTCTTC 2 cut(s) 157, 326
EarI CTCTTC 2 cut(s) 157, 326
Ecl136II GAGCTC 2 cut(s) 256, 298
Eco24I GRGCYC 2 cut(s) 258, 300
Eco32I GATATC 2 cut(s) 233, 544
Eco47I GGWCC 2 cut(s) 129, 354
Eco53kI GAGCTC 2 cut(s) 256, 298
Eco88I CYCGRG 2 cut(s) 107, 501
EcoICRI GAGCTC 2 cut(s) 256, 298
EcoRI GAATTC 2 cut(s) 464, 510
EcoRV GATATC 2 cut(s) 233, 544
EcoT38I GRGCYC 2 cut(s) 258, 300
FaiI YATR 3 cut(s) 396, 456, 554
FaqI GGGAC 1 cut(s) 121
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 522
FokI GGATG 2 cut(s) 305, 361
FriOI GRGCYC 2 cut(s) 258, 300
Fsp4HI GCNGC 1 cut(s) 522
FspBI CTAG 2 cut(s) 477, 604
GluI GCNGC 1 cut(s) 522
GsaI CCCAGC 1 cut(s) 596
HaeIII GGCC 3 cut(s) 113, 221, 484
HapII CCGG 5 cut(s) 127, 185, 222, 322, 536
HindIII AAGCTT 1 cut(s) 237
HinfI GANTC 2 cut(s) 58, 574
HpaII CCGG 5 cut(s) 127, 185, 222, 322, 536
HphI GGTGA 2 cut(s) 506, 525
Hpy166II GTNNAC 2 cut(s) 201, 285
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 2 cut(s) 191, 293
Hpy8I GTNNAC 2 cut(s) 201, 285
HpyAV CCTTC 3 cut(s) 154, 333, 363
HpyCH4III ACNGT 1 cut(s) 402
HpyCH4IV ACGT 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 262, 315
HpySE526I ACGT 1 cut(s) 134
KroI GCCGGC 1 cut(s) 184
KroNI GCCGGC 1 cut(s) 186
Kzo9I GATC 2 cut(s) 9, 36
LpnPI CCDG 8 cut(s) 140, 178, 198, 235, 335, 492, 549, 578
Lsp1109I GCAGC 1 cut(s) 508
LweI GCATC 1 cut(s) 327
MaeI CTAG 2 cut(s) 477, 604
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 457
MalI GATC 2 cut(s) 11, 38
MboI GATC 2 cut(s) 9, 36
MboII GAAGA 4 cut(s) 75, 144, 343, 522
MhlI GDGCHC 2 cut(s) 258, 300
MluCI AATT 5 cut(s) 383, 391, 413, 464, 510
MroNI GCCGGC 1 cut(s) 184
MseI TTAA 2 cut(s) 381, 416
MslI CAYNNNNRTG 2 cut(s) 206, 280
MspI CCGG 5 cut(s) 127, 185, 222, 322, 536
MspR9I CCNGG 1 cut(s) 323
MwoI GCNNNNNNNGC 3 cut(s) 174, 262, 315
NaeI GCCGGC 1 cut(s) 186
NciI CCSGG 1 cut(s) 323
NdeII GATC 2 cut(s) 9, 36
NgoMIV GCCGGC 1 cut(s) 184
NlaIV GGNNCC 2 cut(s) 125, 245
NmeAIII GCCGAG 1 cut(s) 510
NmuCI GTSAC 1 cut(s) 457
OliI CACNNNNGTG 2 cut(s) 206, 280
PaeR7I CTCGAG 2 cut(s) 107, 501
PaqCI CACCTGC 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PdiI GCCGGC 1 cut(s) 186
PfeI GAWTC 2 cut(s) 58, 574
PflFI GACNNNGTC 1 cut(s) 133
PinAI ACCGGT 1 cut(s) 535
PkrI GCNGC 1 cut(s) 523
PshBI ATTAAT 1 cut(s) 416
PsiI TTATAA 1 cut(s) 396
Psp124BI GAGCTC 2 cut(s) 258, 300
PspFI CCCAGC 1 cut(s) 592
PspN4I GGNNCC 2 cut(s) 125, 245
PspPI GGNCC 2 cut(s) 129, 354
PspXI VCTCGAGB 2 cut(s) 107, 501
PsyI GACNNNGTC 1 cut(s) 133
RsaI GTAC 2 cut(s) 200, 286
RsaNI GTAC 2 cut(s) 199, 285
RseI CAYNNNNRTG 2 cut(s) 206, 280
SacI GAGCTC 2 cut(s) 258, 300
SaqAI TTAA 2 cut(s) 381, 416
SatI GCNGC 1 cut(s) 522
Sau3AI GATC 2 cut(s) 9, 36
Sau96I GGNCC 2 cut(s) 129, 354
ScrFI CCNGG 1 cut(s) 323
SduI GDGCHC 2 cut(s) 258, 300
SfaNI GCATC 1 cut(s) 327
Sfr274I CTCGAG 2 cut(s) 107, 501
SinI GGWCC 2 cut(s) 129, 354
SlaI CTCGAG 2 cut(s) 107, 501
SmiMI CAYNNNNRTG 2 cut(s) 206, 280
SmlI CTYRAG 7 cut(s) 107, 118, 191, 291, 469, 501, 598
SmoI CTYRAG 7 cut(s) 107, 118, 191, 291, 469, 501, 598
Sse9I AATT 5 cut(s) 383, 391, 413, 464, 510
SsiI CCGC 5 cut(s) 50, 168, 206, 278, 316
SspMI CTAG 2 cut(s) 477, 604
SstI GAGCTC 2 cut(s) 258, 300
StyD4I CCNGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 402
TaiI ACGT 1 cut(s) 137
TaqI TCGA 6 cut(s) 8, 26, 35, 108, 502, 567
TasI AATT 5 cut(s) 383, 391, 413, 464, 510
TfiI GAWTC 2 cut(s) 58, 574
Tru1I TTAA 2 cut(s) 381, 416
Tru9I TTAA 2 cut(s) 381, 416
TseFI GTSAC 1 cut(s) 457
TseI GCWGC 1 cut(s) 521
Tsp45I GTSAC 1 cut(s) 457
TspDTI ATGAA 1 cut(s) 75
TspGWI ACGGA 1 cut(s) 346
Tth111I GACNNNGTC 1 cut(s) 133
VpaK11BI GGWCC 2 cut(s) 129, 354
VspI ATTAAT 1 cut(s) 416
XapI RAATTY 2 cut(s) 464, 510
XhoI CTCGAG 2 cut(s) 107, 501
XspI CTAG 2 cut(s) 477, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.