Rroxscaffold_4G00325820

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000333
Physical Location & Seq
Reverse (-)
57742336 .. 57751596
9261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00325820.1

Sequence Viewer

Length: 705 bp
ATGGCAAGAAATACTGTTAAGTTTGTGATAGGTTTCTGTATTTTGAGGTCAAGGGAGGCCAGTTTAACAAACACGTTGGTGCCGGACACAATCAAACACACACTTGCTTATTGTCGCTGGCACCAAAGTGTTTGTGTGTGCTTCCCATCACTCCAAAGGGAGAAGTGCATATCCATTTGGGTGAAGGTAAGAATTCTTTTTACTCAGTTTTCATTTGCACATTCTATGCCTTCCAATATATTTGTTTTGCACTCTACAAACTTTCATTTACAGTATTTTCATTCGCCTTCAAGTCAATTAAAACTTCCTATAAGACATCAAAGTAAAAAAAGAACCGTGGAAGGCGCTAGGAGGCCGAGAAGCCGCACAAAGCTCGAGCTGAAATTCGTCCGAGCTGCTCTTCATTCACCGGCAGAAACATATATACTTTTTGCTAGGGACAATGTTATGGCAGGGGAAGTGAAAAATATAGAAATTAATGCAGTCATAGGTAGCCTTCATTCAGCGGAGATGGTTGCTAAGGAGTTTGTCATACCAGTTCAATTTCAGCGGTTTTGGCTGTGGGCGAAGTGTCAAAACCATACATATCGTCCAAACCGTCCATTGATTCCCATGAAGGAAACACAAAATGTTGTGCAGTTGAGGGAGGTATCAAATAAGACTCATTACTTCATAATGCAGAACTCAAGTTGTTCTTGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203
Pfam Domains
Protein Families
MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

234

Amino Acids

27.33

Weight (kDa)

10.19

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 79, 120
AciI CCGC 3 cut(s) 364, 506, 550
AcsI RAATTY 2 cut(s) 192, 383
AflIII ACRYGT 1 cut(s) 72
AgsI TTSAA 2 cut(s) 291, 542
AleI CACNNNNGTG 2 cut(s) 77, 126
AluBI AGCT 3 cut(s) 373, 379, 395
AluI AGCT 3 cut(s) 373, 379, 395
Ama87I CYCGRG 1 cut(s) 374
AoxI GGCC 2 cut(s) 57, 353
ApeKI GCWGC 1 cut(s) 395
ApoI RAATTY 2 cut(s) 192, 383
AseI ATTAAT 1 cut(s) 477
AspLEI GCGC 1 cut(s) 347
AsuHPI GGTGA 2 cut(s) 193, 399
AvaI CYCGRG 1 cut(s) 374
BanI GGYRCC 2 cut(s) 79, 120
BbvI GCAGC 1 cut(s) 382
BccI CCATC 2 cut(s) 154, 505
BcgI CGANNNNNNTGC 2 cut(s) 355, 389
BfaI CTAG 2 cut(s) 348, 435
BfoI RGCGCY 1 cut(s) 348
BisI GCNGC 2 cut(s) 364, 396
BlsI GCNGC 2 cut(s) 365, 397
BmeT110I CYCGRG 1 cut(s) 374
BmiI GGNNCC 2 cut(s) 81, 122
Bpu10I CCTNAGC 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 670
BsaJI CCNNGG 1 cut(s) 336
Bse118I RCCGGY 1 cut(s) 409
Bse1I ACTGG 2 cut(s) 60, 536
BseDI CCNNGG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 218
BseNI ACTGG 2 cut(s) 60, 536
BseXI GCAGC 1 cut(s) 382
BsgI GTGCAG 1 cut(s) 656
BshFI GGCC 2 cut(s) 59, 355
BshNI GGYRCC 2 cut(s) 79, 120
BsiHKCI CYCGRG 1 cut(s) 374
BsiSI CCGG 2 cut(s) 83, 410
BslFI GGGAC 1 cut(s) 452
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 2 cut(s) 59, 355
BsoBI CYCGRG 1 cut(s) 374
BspACI CCGC 3 cut(s) 364, 506, 550
BspANI GGCC 2 cut(s) 59, 355
BspCNI CTCAG 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 81, 122
BspQI GCTCTTC 1 cut(s) 405
BspT107I GGYRCC 2 cut(s) 79, 120
BsrFI RCCGGY 1 cut(s) 409
BsrI ACTGG 2 cut(s) 60, 536
BssAI RCCGGY 1 cut(s) 409
BssECI CCNNGG 1 cut(s) 336
Bst4CI ACNGT 4 cut(s) 16, 273, 337, 599
Bst6I CTCTTC 1 cut(s) 405
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 204, 519
BstDSI CCRYGG 1 cut(s) 336
BstH2I RGCGCY 1 cut(s) 348
BstHHI GCGC 1 cut(s) 347
BstMWI GCNNNNNNNGC 1 cut(s) 556
BstV1I GCAGC 1 cut(s) 382
BsuRI GGCC 2 cut(s) 59, 355
BtgI CCRYGG 1 cut(s) 336
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 1 cut(s) 347
Cfr10I RCCGGY 1 cut(s) 409
CviAII CATG 1 cut(s) 613
CviJI RGCY 8 cut(s) 59, 355, 363, 373, 379, 395, 495, 559
CviKI_1 RGCY 8 cut(s) 59, 355, 363, 373, 379, 395, 495, 559
DdeI CTNAG 2 cut(s) 204, 519
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco88I CYCGRG 1 cut(s) 374
EcoRI GAATTC 1 cut(s) 192
FaeI CATG 1 cut(s) 616
FalI AAGNNNNNCTT 1 cut(s) 679
FaqI GGGAC 1 cut(s) 452
FatI CATG 1 cut(s) 612
Fnu4HI GCNGC 2 cut(s) 364, 396
Fsp4HI GCNGC 2 cut(s) 364, 396
FspBI CTAG 2 cut(s) 348, 435
GlaI GCGC 1 cut(s) 346
GluI GCNGC 2 cut(s) 364, 396
HaeII RGCGCY 1 cut(s) 348
HaeIII GGCC 2 cut(s) 59, 355
HapII CCGG 2 cut(s) 83, 410
HhaI GCGC 1 cut(s) 347
Hin1II CATG 1 cut(s) 616
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HinfI GANTC 2 cut(s) 607, 661
HpaII CCGG 2 cut(s) 83, 410
HphI GGTGA 2 cut(s) 193, 399
Hpy188I TCNGA 1 cut(s) 392
HpyAV CCTTC 6 cut(s) 178, 240, 297, 335, 506, 610
HpyCH4III ACNGT 4 cut(s) 16, 273, 337, 599
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 6 cut(s) 168, 218, 250, 482, 637, 679
HpyF10VI GCNNNNNNNGC 1 cut(s) 556
HpyF3I CTNAG 2 cut(s) 204, 519
HpySE526I ACGT 1 cut(s) 74
Hsp92II CATG 1 cut(s) 616
HspAI GCGC 1 cut(s) 345
LguI GCTCTTC 1 cut(s) 405
LpnPI CCDG 6 cut(s) 73, 96, 103, 423, 438, 549
Lsp1109I GCAGC 1 cut(s) 382
MaeI CTAG 2 cut(s) 348, 435
MaeII ACGT 1 cut(s) 74
MboII GAAGA 1 cut(s) 392
MluCI AATT 5 cut(s) 192, 296, 383, 474, 542
MlyI GAGTC 1 cut(s) 655
MnlI CCTC 5 cut(s) 39, 49, 345, 636, 640
MseI TTAA 4 cut(s) 18, 65, 299, 477
MslI CAYNNNNRTG 3 cut(s) 77, 126, 179
MspA1I CMGCKG 2 cut(s) 506, 550
MspI CCGG 2 cut(s) 83, 410
MwoI GCNNNNNNNGC 1 cut(s) 556
NlaIII CATG 1 cut(s) 616
NlaIV GGNNCC 2 cut(s) 81, 122
NmeAIII GCCGAG 1 cut(s) 381
OliI CACNNNNGTG 2 cut(s) 77, 126
PaeR7I CTCGAG 1 cut(s) 374
PciSI GCTCTTC 1 cut(s) 405
PcsI WCGNNNNNNNCGW 1 cut(s) 595
PfeI GAWTC 1 cut(s) 607
PkrI GCNGC 2 cut(s) 365, 397
PleI GAGTC 1 cut(s) 655
PpsI GAGTC 1 cut(s) 655
PshBI ATTAAT 1 cut(s) 477
PspN4I GGNNCC 2 cut(s) 81, 122
PspXI VCTCGAGB 1 cut(s) 374
RseI CAYNNNNRTG 3 cut(s) 77, 126, 179
SapI GCTCTTC 1 cut(s) 405
SaqAI TTAA 4 cut(s) 18, 65, 299, 477
SatI GCNGC 2 cut(s) 364, 396
SchI GAGTC 1 cut(s) 655
SetI ASST 9 cut(s) 34, 50, 77, 189, 375, 381, 397, 493, 651
Sfr274I CTCGAG 1 cut(s) 374
SlaI CTCGAG 1 cut(s) 374
SmiMI CAYNNNNRTG 3 cut(s) 77, 126, 179
SmlI CTYRAG 2 cut(s) 374, 685
SmoI CTYRAG 2 cut(s) 374, 685
Sse9I AATT 5 cut(s) 192, 296, 383, 474, 542
SsiI CCGC 3 cut(s) 364, 506, 550
SspMI CTAG 2 cut(s) 348, 435
TaaI ACNGT 4 cut(s) 16, 273, 337, 599
TaiI ACGT 1 cut(s) 77
TaqI TCGA 1 cut(s) 375
TasI AATT 5 cut(s) 192, 296, 383, 474, 542
TauI GCSGC 1 cut(s) 366
TfiI GAWTC 1 cut(s) 607
Tru1I TTAA 4 cut(s) 18, 65, 299, 477
Tru9I TTAA 4 cut(s) 18, 65, 299, 477
TseI GCWGC 1 cut(s) 395
TspDTI ATGAA 7 cut(s) 201, 254, 269, 392, 488, 629, 661
VspI ATTAAT 1 cut(s) 477
XapI RAATTY 2 cut(s) 192, 383
XhoI CTCGAG 1 cut(s) 374
XspI CTAG 2 cut(s) 348, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.