Rroxscaffold_2G00115610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000333
Physical Location & Seq
Forward (+)
42001706 .. 42008363
6658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00115610.1

Sequence Viewer

Length: 573 bp
ATGCAGCTCTCTCTCTCTGAAAGGGAGCGGCTGGATGTGGAACGGACTAAGTTGGAGAGGTTGGATCGGACTAAGTTGACAAGGAATCAGAGTTCCTCGAGCTTCGTATCGACAACCGAGACTTCCTTGAAACCGACCTCGAGATCGGCGAAGACAGCAATGACTCCTCGGCCGACGAATCTCACCGGAGTTGTGCATGTGGCGACCTTTCGCCGTCTTGTGAGCCGTACACGGTGGTGGAGCTCGATGCGGTTTAACCCCGATTCGGTTCCAAGCTCTATATCTCACACTACCGTCCACCAATCCTTGCCAAACTCCATCCACGAGCTCGCCTCAACCTCCCGAAGCTCACGAAGCAACCTTGCACGGCGGAGTGGCTCGTGGCGGCGGGCGCAAGTCAACCCCGATCTAGATCGAAAGGAACTTTCGATCCGGATATCTCGAGCTCTAGAGCTTCGTTTTGAGTGGTTCTTGAACCGGAGAGATCGCCTTGAGTTGCTTGAACAAATCTCCGAAAGGATCAAAGAGATTAGTGGAAGTTTTTACATCGAACTCAAGCTCGCCGGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

22.03

Weight (kDa)

11.39

Isoelectric Point (pI)

57.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 28
AccIII TCCGGA 1 cut(s) 432
AciI CCGC 5 cut(s) 28, 250, 370, 385, 388
AclWI GGATC 3 cut(s) 72, 424, 527
AcoI YGGCCR 1 cut(s) 170
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 3 cut(s) 130, 475, 503
AleI CACNNNNGTG 1 cut(s) 235
AloI GAACNNNNNNTCC 4 cut(s) 76, 108, 414, 446
AluBI AGCT 9 cut(s) 7, 102, 243, 276, 328, 348, 446, 454, 559
AluI AGCT 9 cut(s) 7, 102, 243, 276, 328, 348, 446, 454, 559
Alw21I GWGCWC 3 cut(s) 245, 330, 448
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 3 cut(s) 72, 424, 527
Ama87I CYCGRG 3 cut(s) 97, 139, 441
Aor13HI TCCGGA 1 cut(s) 432
AoxI GGCC 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 4
AspLEI GCGC 1 cut(s) 394
AsuHPI GGTGA 1 cut(s) 175
AvaI CYCGRG 3 cut(s) 97, 139, 441
BanII GRGCYC 3 cut(s) 245, 330, 448
BauI CACGAG 2 cut(s) 323, 379
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 3 cut(s) 245, 330, 448
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 326
BceAI ACGGC 3 cut(s) 198, 210, 383
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 2 cut(s) 410, 449
BisI GCNGC 3 cut(s) 5, 29, 386
BlsI GCNGC 3 cut(s) 6, 30, 387
BmeT110I CYCGRG 3 cut(s) 97, 139, 441
BmiI GGNNCC 1 cut(s) 270
BmsI GCATC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 158
BplI GAGNNNNNCTC 2 cut(s) 317, 349
BpuEI CTTGAG 2 cut(s) 512, 539
BsaBI GATNNNNATC 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 167
BsaWI WCCGGW 3 cut(s) 185, 432, 477
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse3DI GCAATG 1 cut(s) 165
Bse8I GATNNNNATC 1 cut(s) 411
BseAI TCCGGA 1 cut(s) 432
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 2 cut(s) 40, 318
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMI GCAATG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 156
BseX3I CGGCCG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 173
BshFI GGCC 1 cut(s) 172
BsiEI CGRYCG 1 cut(s) 173
BsiHKAI GWGCWC 3 cut(s) 245, 330, 448
BsiHKCI CYCGRG 3 cut(s) 97, 139, 441
BsiSI CCGG 4 cut(s) 186, 433, 478, 564
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 113
BsnI GGCC 1 cut(s) 172
BsoBI CYCGRG 3 cut(s) 97, 139, 441
Bsp1286I GDGCHC 3 cut(s) 245, 330, 448
Bsp13I TCCGGA 1 cut(s) 432
Bsp143I GATC 7 cut(s) 64, 143, 406, 412, 429, 484, 519
BspACI CCGC 5 cut(s) 28, 250, 370, 385, 388
BspANI GGCC 1 cut(s) 172
BspEI TCCGGA 1 cut(s) 432
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 3 cut(s) 72, 424, 527
BsrBI CCGCTC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 7 cut(s) 64, 143, 406, 412, 429, 484, 519
BssSI CACGAG 2 cut(s) 323, 379
Bst2BI CACGAG 2 cut(s) 323, 379
Bst4CI ACNGT 2 cut(s) 234, 295
BstC8I GCNNGC 3 cut(s) 330, 390, 561
BstDEI CTNAG 2 cut(s) 48, 72
BstF5I GGATG 2 cut(s) 40, 318
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 7 cut(s) 67, 146, 409, 415, 432, 487, 522
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 7 cut(s) 64, 143, 406, 412, 429, 484, 519
BstMCI CGRYCG 1 cut(s) 173
BstMWI GCNNNNNNNGC 3 cut(s) 155, 354, 391
BstNSI RCATGY 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 158
BstZI CGGCCG 1 cut(s) 170
BsuRI GGCC 1 cut(s) 172
BtsCI GGATG 2 cut(s) 40, 318
Cac8I GCNNGC 3 cut(s) 330, 390, 561
CfoI GCGC 1 cut(s) 394
Csp6I GTAC 1 cut(s) 228
CviAII CATG 1 cut(s) 197
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 2 cut(s) 48, 72
DpnI GATC 7 cut(s) 66, 145, 408, 414, 431, 486, 521
DpnII GATC 7 cut(s) 64, 143, 406, 412, 429, 484, 519
EaeI YGGCCR 1 cut(s) 170
EagI CGGCCG 1 cut(s) 170
EciI GGCGGA 1 cut(s) 385
Ecl136II GAGCTC 3 cut(s) 243, 328, 446
EclXI CGGCCG 1 cut(s) 170
Eco24I GRGCYC 3 cut(s) 245, 330, 448
Eco32I GATATC 1 cut(s) 438
Eco52I CGGCCG 1 cut(s) 170
Eco53kI GAGCTC 3 cut(s) 243, 328, 446
Eco88I CYCGRG 3 cut(s) 97, 139, 441
EcoICRI GAGCTC 3 cut(s) 243, 328, 446
EcoRV GATATC 1 cut(s) 438
EcoT38I GRGCYC 3 cut(s) 245, 330, 448
FaeI CATG 1 cut(s) 200
FaiI YATR 2 cut(s) 198, 281
FatI CATG 1 cut(s) 196
FauI CCCGC 1 cut(s) 381
Fnu4HI GCNGC 3 cut(s) 5, 29, 386
FokI GGATG 2 cut(s) 47, 305
FriOI GRGCYC 3 cut(s) 245, 330, 448
Fsp4HI GCNGC 3 cut(s) 5, 29, 386
FspBI CTAG 2 cut(s) 410, 449
GlaI GCGC 1 cut(s) 393
GluI GCNGC 3 cut(s) 5, 29, 386
HaeIII GGCC 1 cut(s) 172
HapII CCGG 4 cut(s) 186, 433, 478, 564
HhaI GCGC 1 cut(s) 394
Hin1II CATG 1 cut(s) 200
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HincII GTYRAC 2 cut(s) 78, 400
HindII GTYRAC 2 cut(s) 78, 400
HinfI GANTC 4 cut(s) 85, 163, 178, 263
HpaII CCGG 4 cut(s) 186, 433, 478, 564
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 4 cut(s) 78, 230, 298, 400
Hpy188I TCNGA 4 cut(s) 19, 69, 90, 514
Hpy188III TCNNGA 8 cut(s) 141, 342, 351, 410, 433, 441, 449, 472
Hpy8I GTNNAC 4 cut(s) 78, 230, 298, 400
Hpy99I CGWCG 1 cut(s) 178
HpyCH4III ACNGT 2 cut(s) 234, 295
HpyCH4V TGCA 3 cut(s) 4, 196, 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 354, 391
HpyF3I CTNAG 2 cut(s) 48, 72
Hsp92II CATG 1 cut(s) 200
HspAI GCGC 1 cut(s) 392
Kpn2I TCCGGA 1 cut(s) 432
Kzo9I GATC 7 cut(s) 64, 143, 406, 412, 429, 484, 519
LmnI GCTCC 2 cut(s) 25, 240
LpnPI CCDG 4 cut(s) 17, 199, 446, 491
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 237
MaeI CTAG 2 cut(s) 410, 449
MalI GATC 7 cut(s) 66, 145, 408, 414, 431, 486, 521
MbiI CCGCTC 1 cut(s) 28
MboI GATC 7 cut(s) 64, 143, 406, 412, 429, 484, 519
MboII GAAGA 1 cut(s) 163
MhlI GDGCHC 3 cut(s) 245, 330, 448
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 2 cut(s) 33, 42
MnlI CCTC 6 cut(s) 51, 106, 148, 177, 343, 349
MroI TCCGGA 1 cut(s) 432
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 235
MspI CCGG 4 cut(s) 186, 433, 478, 564
MwoI GCNNNNNNNGC 3 cut(s) 155, 354, 391
NdeII GATC 7 cut(s) 64, 143, 406, 412, 429, 484, 519
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 1 cut(s) 270
NmeAIII GCCGAG 1 cut(s) 148
NspI RCATGY 1 cut(s) 200
OliI CACNNNNGTG 1 cut(s) 235
PaeR7I CTCGAG 3 cut(s) 97, 139, 441
PcsI WCGNNNNNNNCGW 1 cut(s) 146
PfeI GAWTC 3 cut(s) 85, 178, 263
PkrI GCNGC 3 cut(s) 6, 30, 387
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Psp124BI GAGCTC 3 cut(s) 245, 330, 448
PspN4I GGNNCC 1 cut(s) 270
PspXI VCTCGAGB 1 cut(s) 97
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 1 cut(s) 235
SacI GAGCTC 3 cut(s) 245, 330, 448
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 3 cut(s) 5, 29, 386
Sau3AI GATC 7 cut(s) 64, 143, 406, 412, 429, 484, 519
SchI GAGTC 1 cut(s) 157
SduI GDGCHC 3 cut(s) 245, 330, 448
SfaNI GCATC 1 cut(s) 237
Sfr274I CTCGAG 3 cut(s) 97, 139, 441
SlaI CTCGAG 3 cut(s) 97, 139, 441
SmiMI CAYNNNNRTG 1 cut(s) 235
SmlI CTYRAG 5 cut(s) 97, 139, 441, 491, 554
SmoI CTYRAG 5 cut(s) 97, 139, 441, 491, 554
SsiI CCGC 5 cut(s) 28, 250, 370, 385, 388
SspMI CTAG 2 cut(s) 410, 449
SstI GAGCTC 3 cut(s) 245, 330, 448
TaaI ACNGT 2 cut(s) 234, 295
TaqI TCGA 8 cut(s) 98, 110, 140, 245, 415, 428, 442, 549
TauI GCSGC 2 cut(s) 31, 388
TfiI GAWTC 3 cut(s) 85, 178, 263
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseI GCWGC 1 cut(s) 4
TspGWI ACGGA 1 cut(s) 58
XbaI TCTAGA 2 cut(s) 409, 448
XceI RCATGY 1 cut(s) 200
XhoI CTCGAG 3 cut(s) 97, 139, 441
XspI CTAG 2 cut(s) 410, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.