gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 410, 495 |
| AcoI | YGGCCR | 2 cut(s) | 42, 208 |
| AcsI | RAATTY | 1 cut(s) | 262 |
| AfaI | GTAC | 3 cut(s) | 63, 77, 98 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 409 |
| AgsI | TTSAA | 3 cut(s) | 68, 347, 480 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 297 |
| AluBI | AGCT | 1 cut(s) | 328 |
| AluI | AGCT | 1 cut(s) | 328 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 221 |
| AoxI | GGCC | 3 cut(s) | 42, 79, 208 |
| ApoI | RAATTY | 1 cut(s) | 262 |
| AseI | ATTAAT | 1 cut(s) | 14 |
| AspS9I | GGNCC | 1 cut(s) | 80 |
| BaeGI | GKGCMC | 1 cut(s) | 472 |
| BalI | TGGCCA | 1 cut(s) | 210 |
| BccI | CCATC | 1 cut(s) | 219 |
| BceAI | ACGGC | 1 cut(s) | 94 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 297 |
| BmgT120I | GGNCC | 1 cut(s) | 80 |
| BpuEI | CTTGAG | 1 cut(s) | 134 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 409 |
| Bse1I | ACTGG | 1 cut(s) | 215 |
| Bse3DI | GCAATG | 1 cut(s) | 339 |
| BseGI | GGATG | 2 cut(s) | 64, 211 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 409 |
| BseMI | GCAATG | 1 cut(s) | 339 |
| BseNI | ACTGG | 1 cut(s) | 215 |
| BseRI | GAGGAG | 1 cut(s) | 392 |
| BseSI | GKGCMC | 1 cut(s) | 472 |
| BshFI | GGCC | 3 cut(s) | 44, 81, 210 |
| BslFI | GGGAC | 1 cut(s) | 142 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 409 |
| BsmFI | GGGAC | 1 cut(s) | 142 |
| BsnI | GGCC | 3 cut(s) | 44, 81, 210 |
| Bsp1286I | GDGCHC | 1 cut(s) | 472 |
| Bsp143I | GATC | 1 cut(s) | 160 |
| BspACI | CCGC | 2 cut(s) | 410, 495 |
| BspANI | GGCC | 3 cut(s) | 44, 81, 210 |
| BsrDI | GCAATG | 1 cut(s) | 339 |
| BsrI | ACTGG | 1 cut(s) | 215 |
| BssMI | GATC | 1 cut(s) | 160 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 441 |
| BstC8I | GCNNGC | 1 cut(s) | 330 |
| BstDEI | CTNAG | 1 cut(s) | 196 |
| BstF5I | GGATG | 2 cut(s) | 64, 211 |
| BstKTI | GATC | 1 cut(s) | 163 |
| BstMBI | GATC | 1 cut(s) | 160 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 338, 441 |
| BstNSI | RCATGY | 1 cut(s) | 444 |
| BstSLI | GKGCMC | 1 cut(s) | 472 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 267 |
| BsuRI | GGCC | 3 cut(s) | 44, 81, 210 |
| BtsCI | GGATG | 2 cut(s) | 64, 211 |
| Cac8I | GCNNGC | 1 cut(s) | 330 |
| CaiI | CAGNNNCTG | 1 cut(s) | 221 |
| Cfr13I | GGNCC | 1 cut(s) | 80 |
| Csp6I | GTAC | 3 cut(s) | 62, 76, 97 |
| CviAII | CATG | 3 cut(s) | 55, 289, 441 |
| CviJI | RGCY | 9 cut(s) | 44, 81, 200, 210, 255, 328, 341, 395, 450 |
| CviKI_1 | RGCY | 9 cut(s) | 44, 81, 200, 210, 255, 328, 341, 395, 450 |
| CviQI | GTAC | 3 cut(s) | 62, 76, 97 |
| DdeI | CTNAG | 1 cut(s) | 196 |
| DpnI | GATC | 1 cut(s) | 162 |
| DpnII | GATC | 1 cut(s) | 160 |
| DriI | GACNNNNNGTC | 1 cut(s) | 297 |
| EaeI | YGGCCR | 2 cut(s) | 42, 208 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 297 |
| FaeI | CATG | 3 cut(s) | 58, 292, 444 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 405, 437 |
| FaqI | GGGAC | 1 cut(s) | 142 |
| FatI | CATG | 3 cut(s) | 54, 288, 440 |
| FokI | GGATG | 2 cut(s) | 71, 198 |
| HaeIII | GGCC | 3 cut(s) | 44, 81, 210 |
| Hin1II | CATG | 3 cut(s) | 58, 292, 444 |
| HindIII | AAGCTT | 1 cut(s) | 326 |
| HinfI | GANTC | 3 cut(s) | 38, 149, 416 |
| Hpy188I | TCNGA | 1 cut(s) | 223 |
| HpyCH4IV | ACGT | 1 cut(s) | 95 |
| HpyCH4V | TGCA | 3 cut(s) | 232, 332, 444 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 338, 441 |
| HpyF3I | CTNAG | 1 cut(s) | 196 |
| HpySE526I | ACGT | 1 cut(s) | 95 |
| Hsp92II | CATG | 3 cut(s) | 58, 292, 444 |
| Kzo9I | GATC | 1 cut(s) | 160 |
| LpnPI | CCDG | 1 cut(s) | 228 |
| MaeII | ACGT | 1 cut(s) | 95 |
| MaeIII | GTNAC | 2 cut(s) | 280, 460 |
| MalI | GATC | 1 cut(s) | 162 |
| MboI | GATC | 1 cut(s) | 160 |
| MboII | GAAGA | 4 cut(s) | 17, 236, 359, 425 |
| MhlI | GDGCHC | 1 cut(s) | 472 |
| MlsI | TGGCCA | 1 cut(s) | 210 |
| MluCI | AATT | 5 cut(s) | 11, 262, 308, 361, 508 |
| MluNI | TGGCCA | 1 cut(s) | 210 |
| MnlI | CCTC | 5 cut(s) | 30, 133, 266, 410, 413 |
| Mox20I | TGGCCA | 1 cut(s) | 210 |
| MscI | TGGCCA | 1 cut(s) | 210 |
| MseI | TTAA | 4 cut(s) | 14, 306, 311, 423 |
| Msp20I | TGGCCA | 1 cut(s) | 210 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 338, 441 |
| NdeII | GATC | 1 cut(s) | 160 |
| NlaIII | CATG | 3 cut(s) | 58, 292, 444 |
| NspI | RCATGY | 1 cut(s) | 444 |
| PfeI | GAWTC | 3 cut(s) | 38, 149, 416 |
| PshBI | ATTAAT | 1 cut(s) | 14 |
| PspPI | GGNCC | 1 cut(s) | 80 |
| PstNI | CAGNNNCTG | 1 cut(s) | 221 |
| RsaI | GTAC | 3 cut(s) | 63, 77, 98 |
| RsaNI | GTAC | 3 cut(s) | 62, 76, 97 |
| SaqAI | TTAA | 4 cut(s) | 14, 306, 311, 423 |
| Sau3AI | GATC | 1 cut(s) | 160 |
| Sau96I | GGNCC | 1 cut(s) | 80 |
| SduI | GDGCHC | 1 cut(s) | 472 |
| SetI | ASST | 4 cut(s) | 22, 98, 330, 402 |
| SmlI | CTYRAG | 1 cut(s) | 113 |
| SmoI | CTYRAG | 1 cut(s) | 113 |
| Sse9I | AATT | 5 cut(s) | 11, 262, 308, 361, 508 |
| SsiI | CCGC | 2 cut(s) | 410, 495 |
| TaiI | ACGT | 1 cut(s) | 98 |
| TaqI | TCGA | 1 cut(s) | 159 |
| TasI | AATT | 5 cut(s) | 11, 262, 308, 361, 508 |
| TatI | WGTACW | 1 cut(s) | 61 |
| TfiI | GAWTC | 3 cut(s) | 38, 149, 416 |
| Tru1I | TTAA | 4 cut(s) | 14, 306, 311, 423 |
| Tru9I | TTAA | 4 cut(s) | 14, 306, 311, 423 |
| TspDTI | ATGAA | 1 cut(s) | 332 |
| VspI | ATTAAT | 1 cut(s) | 14 |
| XapI | RAATTY | 1 cut(s) | 262 |
| XceI | RCATGY | 1 cut(s) | 444 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 52 |