gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 46 - 165 | 6.3e-23 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 54 |
| AclWI | GGATC | 1 cut(s) | 89 |
| AcoI | YGGCCR | 2 cut(s) | 252, 418 |
| AfaI | GTAC | 3 cut(s) | 116, 273, 308 |
| AgsI | TTSAA | 3 cut(s) | 49, 278, 513 |
| AlwI | GGATC | 1 cut(s) | 89 |
| Ama87I | CYCGRG | 1 cut(s) | 150 |
| AoxI | GGCC | 3 cut(s) | 143, 252, 418 |
| ApaI | GGGCCC | 1 cut(s) | 147 |
| AseI | ATTAAT | 1 cut(s) | 224 |
| AspS9I | GGNCC | 2 cut(s) | 143, 144 |
| AvaI | CYCGRG | 1 cut(s) | 150 |
| BaeGI | GKGCMC | 1 cut(s) | 147 |
| BalI | TGGCCA | 1 cut(s) | 420 |
| BanII | GRGCYC | 1 cut(s) | 147 |
| BmeT110I | CYCGRG | 1 cut(s) | 150 |
| BmgT120I | GGNCC | 2 cut(s) | 143, 144 |
| BmiI | GGNNCC | 1 cut(s) | 145 |
| BmsI | GCATC | 1 cut(s) | 118 |
| Bpu10I | CCTNAGC | 1 cut(s) | 189 |
| BpuEI | CTTGAG | 1 cut(s) | 344 |
| BsaJI | CCNNGG | 1 cut(s) | 139 |
| BseDI | CCNNGG | 1 cut(s) | 139 |
| BseGI | GGATG | 3 cut(s) | 20, 133, 274 |
| BseSI | GKGCMC | 1 cut(s) | 147 |
| BshFI | GGCC | 3 cut(s) | 145, 254, 420 |
| BsiHKCI | CYCGRG | 1 cut(s) | 150 |
| BslFI | GGGAC | 1 cut(s) | 352 |
| BsmFI | GGGAC | 1 cut(s) | 352 |
| BsnI | GGCC | 3 cut(s) | 145, 254, 420 |
| BsoBI | CYCGRG | 1 cut(s) | 150 |
| Bsp120I | GGGCCC | 1 cut(s) | 143 |
| Bsp1286I | GDGCHC | 1 cut(s) | 147 |
| Bsp1407I | TGTACA | 1 cut(s) | 114 |
| Bsp143I | GATC | 3 cut(s) | 81, 217, 370 |
| BspANI | GGCC | 3 cut(s) | 145, 254, 420 |
| BspLI | GGNNCC | 1 cut(s) | 145 |
| BspPI | GGATC | 1 cut(s) | 89 |
| BsrGI | TGTACA | 1 cut(s) | 114 |
| BssECI | CCNNGG | 1 cut(s) | 139 |
| BssMI | GATC | 3 cut(s) | 81, 217, 370 |
| BssT1I | CCWWGG | 1 cut(s) | 139 |
| Bst6I | CTCTTC | 1 cut(s) | 68 |
| BstAUI | TGTACA | 1 cut(s) | 114 |
| BstDEI | CTNAG | 2 cut(s) | 189, 406 |
| BstF5I | GGATG | 3 cut(s) | 20, 133, 274 |
| BstKTI | GATC | 3 cut(s) | 84, 220, 373 |
| BstMBI | GATC | 3 cut(s) | 81, 217, 370 |
| BstSLI | GKGCMC | 1 cut(s) | 147 |
| BsuRI | GGCC | 3 cut(s) | 145, 254, 420 |
| BtsCI | GGATG | 3 cut(s) | 20, 133, 274 |
| Cfr13I | GGNCC | 2 cut(s) | 143, 144 |
| Csp6I | GTAC | 3 cut(s) | 115, 272, 307 |
| CviAII | CATG | 4 cut(s) | 101, 211, 265, 500 |
| CviJI | RGCY | 8 cut(s) | 5, 145, 188, 194, 254, 410, 420, 465 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 145, 188, 194, 254, 410, 420, 465 |
| CviQI | GTAC | 3 cut(s) | 115, 272, 307 |
| DdeI | CTNAG | 2 cut(s) | 189, 406 |
| DpnI | GATC | 3 cut(s) | 83, 219, 372 |
| DpnII | GATC | 3 cut(s) | 81, 217, 370 |
| DraI | TTTAAA | 1 cut(s) | 34 |
| EaeI | YGGCCR | 2 cut(s) | 252, 418 |
| Eam1104I | CTCTTC | 1 cut(s) | 68 |
| EarI | CTCTTC | 1 cut(s) | 68 |
| Eco130I | CCWWGG | 1 cut(s) | 139 |
| Eco24I | GRGCYC | 1 cut(s) | 147 |
| Eco88I | CYCGRG | 1 cut(s) | 150 |
| EcoO109I | RGGNCCY | 1 cut(s) | 144 |
| EcoT14I | CCWWGG | 1 cut(s) | 139 |
| EcoT38I | GRGCYC | 1 cut(s) | 147 |
| ErhI | CCWWGG | 1 cut(s) | 139 |
| FaeI | CATG | 4 cut(s) | 104, 214, 268, 503 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 70, 102 |
| FaqI | GGGAC | 1 cut(s) | 352 |
| FatI | CATG | 4 cut(s) | 100, 210, 264, 499 |
| FokI | GGATG | 3 cut(s) | 7, 140, 281 |
| FriOI | GRGCYC | 1 cut(s) | 147 |
| HaeIII | GGCC | 3 cut(s) | 145, 254, 420 |
| Hin1II | CATG | 4 cut(s) | 104, 214, 268, 503 |
| HinfI | GANTC | 1 cut(s) | 248 |
| Hpy166II | GTNNAC | 1 cut(s) | 117 |
| Hpy188I | TCNGA | 2 cut(s) | 25, 433 |
| Hpy188III | TCNNGA | 1 cut(s) | 150 |
| Hpy8I | GTNNAC | 1 cut(s) | 117 |
| HpyAV | CCTTC | 2 cut(s) | 72, 505 |
| HpyCH4IV | ACGT | 2 cut(s) | 54, 305 |
| HpyCH4V | TGCA | 2 cut(s) | 131, 442 |
| HpyF3I | CTNAG | 2 cut(s) | 189, 406 |
| HpySE526I | ACGT | 2 cut(s) | 54, 305 |
| Hsp92II | CATG | 4 cut(s) | 104, 214, 268, 503 |
| Kzo9I | GATC | 3 cut(s) | 81, 217, 370 |
| LpnPI | CCDG | 1 cut(s) | 402 |
| LweI | GCATC | 1 cut(s) | 118 |
| MaeII | ACGT | 2 cut(s) | 54, 305 |
| MaeIII | GTNAC | 1 cut(s) | 490 |
| MalI | GATC | 3 cut(s) | 83, 219, 372 |
| MboI | GATC | 3 cut(s) | 81, 217, 370 |
| MboII | GAAGA | 6 cut(s) | 6, 85, 185, 227, 251, 446 |
| MhlI | GDGCHC | 1 cut(s) | 147 |
| MlsI | TGGCCA | 1 cut(s) | 420 |
| MluCI | AATT | 7 cut(s) | 58, 198, 205, 221, 358, 412, 472 |
| MluNI | TGGCCA | 1 cut(s) | 420 |
| MnlI | CCTC | 5 cut(s) | 36, 157, 240, 343, 476 |
| Mox20I | TGGCCA | 1 cut(s) | 420 |
| MscI | TGGCCA | 1 cut(s) | 420 |
| MseI | TTAA | 4 cut(s) | 33, 57, 95, 224 |
| Msp20I | TGGCCA | 1 cut(s) | 420 |
| NdeII | GATC | 3 cut(s) | 81, 217, 370 |
| NlaIII | CATG | 4 cut(s) | 104, 214, 268, 503 |
| NlaIV | GGNNCC | 1 cut(s) | 145 |
| PaeR7I | CTCGAG | 1 cut(s) | 150 |
| PfeI | GAWTC | 1 cut(s) | 248 |
| PshBI | ATTAAT | 1 cut(s) | 224 |
| Psp1406I | AACGTT | 1 cut(s) | 54 |
| PspN4I | GGNNCC | 1 cut(s) | 145 |
| PspOMI | GGGCCC | 1 cut(s) | 143 |
| PspPI | GGNCC | 2 cut(s) | 143, 144 |
| RsaI | GTAC | 3 cut(s) | 116, 273, 308 |
| RsaNI | GTAC | 3 cut(s) | 115, 272, 307 |
| SaqAI | TTAA | 4 cut(s) | 33, 57, 95, 224 |
| Sau3AI | GATC | 3 cut(s) | 81, 217, 370 |
| Sau96I | GGNCC | 2 cut(s) | 143, 144 |
| SduI | GDGCHC | 1 cut(s) | 147 |
| SetI | ASST | 5 cut(s) | 47, 57, 232, 308, 497 |
| SfaNI | GCATC | 1 cut(s) | 118 |
| Sfr274I | CTCGAG | 1 cut(s) | 150 |
| SlaI | CTCGAG | 1 cut(s) | 150 |
| SmlI | CTYRAG | 2 cut(s) | 150, 323 |
| SmoI | CTYRAG | 2 cut(s) | 150, 323 |
| Sse9I | AATT | 7 cut(s) | 58, 198, 205, 221, 358, 412, 472 |
| StyI | CCWWGG | 1 cut(s) | 139 |
| TaiI | ACGT | 2 cut(s) | 57, 308 |
| TaqI | TCGA | 3 cut(s) | 64, 151, 369 |
| TasI | AATT | 7 cut(s) | 58, 198, 205, 221, 358, 412, 472 |
| TatI | WGTACW | 2 cut(s) | 114, 271 |
| TfiI | GAWTC | 1 cut(s) | 248 |
| Tru1I | TTAA | 4 cut(s) | 33, 57, 95, 224 |
| Tru9I | TTAA | 4 cut(s) | 33, 57, 95, 224 |
| TspDTI | ATGAA | 1 cut(s) | 252 |
| TspGWI | ACGGA | 1 cut(s) | 401 |
| VspI | ATTAAT | 1 cut(s) | 224 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 262 |
| XhoI | CTCGAG | 1 cut(s) | 150 |