RchiOBHm_Chr5g0070531

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000333
Physical Location & Seq
Forward (+)
76337441 .. 76343713
6273 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34575

Sequence Viewer

Length: 1530 bp
ATGGTAAACCCAGAACCCCAAACCCCATACAGACTCGACTACAACGCCAACTTCCGCGACTGGAGAACCAAGCTCGACTCTGTCCTCGACCAGAACCAAGTCAAGTACGTCCTCACCGAACCAAAACCCCCCGAGCCCACAGGCGCAACCCCTCAGAACGACGTCGCCCGCCACCAGAAATGGCTCCTCGACGACTTCACCGCCCGCCACGTCATCCTCGGAGCCCTGCACGAAAGGGTTTACGTGTCTTATCACCGCCACAAAACCGCCAGCTCCCTCCTGGAAGCTCTGACGGCCCACTTCACGAAGCCCTCCATGTCCCGGAGACTGGTCAAGTTCCGGCGCTACATGGAGCACAGATTGGCCGAGGGCAAATCGGTATATGAGCACGTGTCGGAGATGGGTTCCATGGCTGCTGCGCTAGAGAGTGAGGGAGTGAGAGTTTCGGAGGAGTTGCAGGTTTTGATGCTGATGAATAGCTTGCCGGACAGGTGGGATGAGACGGTTGGTGGGCTTATAGTGAACATGGATGTAGATGGTCCAGATGAAATGGGTCTCGACAAGGTGAGCAAGAGGCTCATAGACTTGGTTTTGAAGAAAGACCAAGAAGACAATCCACACCTGTATGCTACTATAAAGGTTGCCCGGGAGGAGGATCTGGTGGAGCAGATTGGAAAAGACTTTTATTTTGACCTTGTGGATCATGAAAAAGTCAGAAGTTTTTGTATTCTGAAGGAGACGCCATTTTACCGATTTAAGGAGGAGGTCGCTAAAGAGTTTGGCATACCAGTACAATATCAGCGCTACTGGCGGTGGATGAAGCGTCAAAACAATACATATCGCCCAGGCTATCCATTGACGCTTATGGAGGAAACAGTATCTGTTAAAGAGTTGATTGATAATCGTTCAGAAGTAAACTTGTTCTTAGAAGTAGAGCTTGGGCTGGATTTACACCCTATTGCTCCACCTGACAAGACAAGAGATGTCATTCTTCTCTTCTTTAAGCTTTATGATCCAGAAATAGAAGAGCTACGTTATGTTGGAAGGCTATTTGTCAACCTCACTGGCAAACCTACTGAAATCTTATCGAAATTAAATAAGTTCGCTGGCTATGCCCTGGACCAAGAGATAGACCTTTATGAGGAATATAAGTTTCAACCCACGGTTGTGTGTGATCTCATTGACAAGAATCTTACATTTCGAGCCAGTCAGCTTGAGGATGGAGACATTGTCTGCTTTCAGAAACCAACTCCAGTAGAAATTGGTGTATGTTCCCTGTATCGAAATGTCCAGACTTTTCTGGACTCTGTGCCCATACCTCATTCCTCAAGATCTGAGGCAAACACCTCAGTTGCATTCTATGTAAGAGGAAGAGGAAGACGAAGAGGAAGAGGAAGAGGAAGAGGAAGATCTAGTTTGGGATTGTTTACGGGAAGAGGAAGAGGCAGAGGAATGAGCAATGGGAGTGGGCTAGAGCCACCTGCAAGGGAAACTACTATTGACAACGAAAGAGGCAGGGAAGAGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203
Pfam Domains
Protein Families
MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

509

Amino Acids

58.76

Weight (kDa)

6.13

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 28 - 172 8.5e-20 gag-polypeptide of LTR copia-type
USP7_ICP0_bdg PF12436 267 - 436 3.4e-39 ICP0-binding domain of Ubiquitin-specific protease 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1489
AatII GACGTC 1 cut(s) 165
Acc36I ACCTGC 2 cut(s) 448, 1489
AccII CGCG 1 cut(s) 57
AciI CCGC 7 cut(s) 55, 169, 201, 205, 256, 267, 811
AclWI GGATC 3 cut(s) 663, 708, 1007
AcoI YGGCCR 1 cut(s) 363
AcuI CTGAAG 1 cut(s) 752
AcvI CACGTG 1 cut(s) 391
AcyI GRCGYC 2 cut(s) 162, 740
AfaI GTAC 2 cut(s) 107, 792
AfeI AGCGCT 1 cut(s) 803
AfiI CCNNNNNNNGG 5 cut(s) 321, 328, 652, 757, 1141
AflIII ACRYGT 2 cut(s) 243, 390
AgsI TTSAA 2 cut(s) 595, 1157
AjiI CACGTC 1 cut(s) 211
AjnI CCWGG 3 cut(s) 279, 844, 1116
AjuI GAANNNNNNNTTGG 2 cut(s) 921, 953
AleI CACNNNNGTG 1 cut(s) 1166
AluBI AGCT 8 cut(s) 73, 273, 287, 480, 937, 1006, 1030, 1213
AluI AGCT 8 cut(s) 73, 273, 287, 480, 937, 1006, 1030, 1213
Alw21I GWGCWC 2 cut(s) 357, 390
Alw26I GTCTC 5 cut(s) 319, 494, 560, 731, 1218
AlwI GGATC 3 cut(s) 663, 708, 1007
AlwNI CAGNNNCTG 1 cut(s) 881
Ama87I CYCGRG 2 cut(s) 131, 645
Aor51HI AGCGCT 1 cut(s) 803
AoxI GGCC 2 cut(s) 294, 363
ApeKI GCWGC 2 cut(s) 413, 416
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
AspLEI GCGC 4 cut(s) 146, 345, 421, 804
AspS9I GGNCC 3 cut(s) 295, 539, 1120
AsuC2I CCSGG 3 cut(s) 322, 646, 647
AsuHPI GGTGA 4 cut(s) 106, 190, 245, 577
AvaI CYCGRG 2 cut(s) 131, 645
AvaII GGWCC 2 cut(s) 539, 1120
BaeGI GKGCMC 1 cut(s) 1314
BanII GRGCYC 2 cut(s) 138, 226
BbrPI CACGTG 1 cut(s) 391
BbsI GAAGAC 2 cut(s) 615, 1384
Bbv12I GWGCWC 2 cut(s) 357, 390
BbvI GCAGC 2 cut(s) 400, 403
BccI CCATC 3 cut(s) 394, 530, 1214
BceAI ACGGC 1 cut(s) 309
BciT130I CCWGG 3 cut(s) 281, 846, 1118
BcnI CCSGG 3 cut(s) 322, 646, 647
BcoDI GTCTC 5 cut(s) 319, 494, 560, 731, 1218
BfaI CTAG 3 cut(s) 422, 1413, 1472
BfoI RGCGCY 2 cut(s) 346, 805
BfuAI ACCTGC 2 cut(s) 448, 1489
BglII AGATCT 2 cut(s) 1331, 1409
BisI GCNGC 2 cut(s) 414, 417
BlsI GCNGC 2 cut(s) 415, 418
Bme1390I CCNGG 6 cut(s) 281, 322, 646, 647, 846, 1118
Bme18I GGWCC 2 cut(s) 539, 1120
BmeT110I CYCGRG 2 cut(s) 131, 645
BmgBI CACGTC 1 cut(s) 211
BmgT120I GGNCC 3 cut(s) 295, 539, 1120
BmiI GGNNCC 3 cut(s) 185, 223, 406
BmrFI CCNGG 6 cut(s) 281, 322, 646, 647, 846, 1118
BmsI GCATC 1 cut(s) 456
BpiI GAAGAC 2 cut(s) 615, 1384
BpmI CTGGAG 2 cut(s) 82, 1236
BpuEI CTTGAG 2 cut(s) 1235, 1312
BpuMI CCSGG 3 cut(s) 322, 646, 647
BsaAI YACGTR 2 cut(s) 244, 391
BsaHI GRCGYC 2 cut(s) 162, 740
BsaI GGTCTC 1 cut(s) 560
BsaJI CCNNGG 7 cut(s) 217, 366, 408, 645, 844, 1116, 1161
BsaXI ACNNNNNCTCC 4 cut(s) 426, 456, 1215, 1245
Bsc4I CCNNNNNNNGG 5 cut(s) 321, 328, 652, 757, 1141
Bse1I ACTGG 7 cut(s) 65, 333, 788, 812, 1069, 1206, 1253
Bse3DI GCAATG 1 cut(s) 1465
BseBI CCWGG 3 cut(s) 281, 846, 1118
BseDI CCNNGG 7 cut(s) 217, 366, 408, 645, 844, 1116, 1161
BseGI GGATG 5 cut(s) 213, 502, 535, 822, 1225
BseLI CCNNNNNNNGG 5 cut(s) 321, 328, 652, 757, 1141
BseMI GCAATG 1 cut(s) 1465
BseMII CTCAG 3 cut(s) 167, 1326, 1362
BseNI ACTGG 7 cut(s) 65, 333, 788, 812, 1069, 1206, 1253
BseRI GAGGAG 4 cut(s) 176, 464, 665, 776
BseSI GKGCMC 1 cut(s) 1314
BseXI GCAGC 2 cut(s) 400, 403
BsgI GTGCAG 1 cut(s) 212
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 2 cut(s) 296, 365
BsiHKAI GWGCWC 2 cut(s) 357, 390
BsiHKCI CYCGRG 2 cut(s) 131, 645
BsiSI CCGG 4 cut(s) 322, 340, 485, 646
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 5 cut(s) 321, 328, 652, 757, 1141
BsmAI GTCTC 5 cut(s) 319, 494, 560, 731, 1218
BsmBI CGTCTC 2 cut(s) 494, 731
BsmFI GGGAC 1 cut(s) 304
BsmI GAATGC 1 cut(s) 1355
BsnI GGCC 2 cut(s) 296, 365
Bso31I GGTCTC 1 cut(s) 560
BsoBI CYCGRG 2 cut(s) 131, 645
Bsp1286I GDGCHC 5 cut(s) 138, 226, 357, 390, 1314
Bsp143I GATC 6 cut(s) 655, 700, 1012, 1174, 1331, 1409
Bsp19I CCATGG 1 cut(s) 408
BspACI CCGC 7 cut(s) 55, 169, 201, 205, 256, 267, 811
BspANI GGCC 2 cut(s) 296, 365
BspCNI CTCAG 3 cut(s) 166, 1327, 1361
BspFNI CGCG 1 cut(s) 57
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 3 cut(s) 185, 223, 406
BspMI ACCTGC 2 cut(s) 448, 1489
BspPI GGATC 3 cut(s) 663, 708, 1007
BspQI GCTCTTC 1 cut(s) 1020
BspTNI GGTCTC 1 cut(s) 560
BsrDI GCAATG 1 cut(s) 1465
BsrI ACTGG 7 cut(s) 65, 333, 788, 812, 1069, 1206, 1253
BssECI CCNNGG 7 cut(s) 217, 366, 408, 645, 844, 1116, 1161
BssMI GATC 6 cut(s) 655, 700, 1012, 1174, 1331, 1409
BssNI GRCGYC 2 cut(s) 162, 740
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 3 cut(s) 281, 846, 1118
Bst4CI ACNGT 3 cut(s) 505, 877, 1165
BstACI GRCGYC 2 cut(s) 162, 740
BstBAI YACGTR 2 cut(s) 244, 391
BstC8I GCNNGC 5 cut(s) 169, 205, 271, 482, 1108
BstDEI CTNAG 4 cut(s) 153, 925, 1335, 1348
BstDSI CCRYGG 2 cut(s) 408, 1161
BstENI CCTNNNNNAGG 1 cut(s) 1139
BstF5I GGATG 5 cut(s) 213, 502, 535, 822, 1225
BstFNI CGCG 1 cut(s) 57
BstH2I RGCGCY 2 cut(s) 346, 805
BstHHI GCGC 4 cut(s) 146, 345, 421, 804
BstKTI GATC 6 cut(s) 658, 703, 1015, 1177, 1334, 1412
BstMAI GTCTC 5 cut(s) 319, 494, 560, 731, 1218
BstMBI GATC 6 cut(s) 655, 700, 1012, 1174, 1331, 1409
BstMWI GCNNNNNNNGC 3 cut(s) 293, 808, 1112
BstNI CCWGG 3 cut(s) 281, 846, 1118
BstSCI CCNGG 6 cut(s) 279, 320, 644, 645, 844, 1116
BstSLI GKGCMC 1 cut(s) 1314
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 400, 403
BstV2I GAAGAC 2 cut(s) 615, 1384
BstX2I RGATCY 3 cut(s) 655, 1331, 1409
BstYI RGATCY 3 cut(s) 655, 1331, 1409
BsuRI GGCC 2 cut(s) 296, 365
BtgI CCRYGG 2 cut(s) 408, 1161
BtrI CACGTC 1 cut(s) 211
BtsCI GGATG 5 cut(s) 213, 502, 535, 822, 1225
BtsIMutI CAGTG 1 cut(s) 1062
BveI ACCTGC 2 cut(s) 448, 1489
Cac8I GCNNGC 5 cut(s) 169, 205, 271, 482, 1108
CaiI CAGNNNCTG 1 cut(s) 881
CciI TCATGA 1 cut(s) 703
CfoI GCGC 4 cut(s) 146, 345, 421, 804
Cfr13I GGNCC 3 cut(s) 295, 539, 1120
Cfr9I CCCGGG 1 cut(s) 645
CseI GACGC 3 cut(s) 748, 812, 868
Csp6I GTAC 2 cut(s) 106, 791
CspCI CAANNNNNGTGG 2 cut(s) 1447, 1482
CviAII CATG 5 cut(s) 316, 349, 409, 526, 704
CviQI GTAC 2 cut(s) 106, 791
DdeI CTNAG 4 cut(s) 153, 925, 1335, 1348
DpnI GATC 6 cut(s) 657, 702, 1014, 1176, 1333, 1411
DpnII GATC 6 cut(s) 655, 700, 1012, 1174, 1331, 1409
EaeI YGGCCR 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 2 cut(s) 138, 226
Eco31I GGTCTC 1 cut(s) 560
Eco47I GGWCC 2 cut(s) 539, 1120
Eco47III AGCGCT 1 cut(s) 803
Eco57I CTGAAG 1 cut(s) 752
Eco72I CACGTG 1 cut(s) 391
Eco88I CYCGRG 2 cut(s) 131, 645
EcoNI CCTNNNNNAGG 1 cut(s) 1139
EcoRII CCWGG 3 cut(s) 279, 844, 1116
EcoT14I CCWWGG 1 cut(s) 408
EcoT38I GRGCYC 2 cut(s) 138, 226
ErhI CCWWGG 1 cut(s) 408
Esp3I CGTCTC 2 cut(s) 494, 731
FaeI CATG 5 cut(s) 319, 352, 412, 529, 707
FalI AAGNNNNNCTT 2 cut(s) 921, 953
FaqI GGGAC 1 cut(s) 304
FatI CATG 5 cut(s) 315, 348, 408, 525, 703
FauI CCCGC 2 cut(s) 176, 212
Fnu4HI GCNGC 2 cut(s) 414, 417
FokI GGATG 5 cut(s) 200, 509, 542, 829, 1232
FriOI GRGCYC 2 cut(s) 138, 226
Fsp4HI GCNGC 2 cut(s) 414, 417
FspBI CTAG 3 cut(s) 422, 1413, 1472
GlaI GCGC 4 cut(s) 145, 344, 420, 803
GluI GCNGC 2 cut(s) 414, 417
GsuI CTGGAG 2 cut(s) 82, 1236
HaeII RGCGCY 2 cut(s) 346, 805
HaeIII GGCC 2 cut(s) 296, 365
HapII CCGG 4 cut(s) 322, 340, 485, 646
HgaI GACGC 3 cut(s) 748, 812, 868
HhaI GCGC 4 cut(s) 146, 345, 421, 804
Hin1I GRCGYC 2 cut(s) 162, 740
Hin1II CATG 5 cut(s) 319, 352, 412, 529, 707
Hin6I GCGC 4 cut(s) 144, 343, 419, 802
HinP1I GCGC 4 cut(s) 144, 343, 419, 802
HincII GTYRAC 1 cut(s) 1057
HindII GTYRAC 1 cut(s) 1057
HindIII AAGCTT 1 cut(s) 1004
HinfI GANTC 4 cut(s) 33, 77, 1189, 1304
HpaII CCGG 4 cut(s) 322, 340, 485, 646
HphI GGTGA 4 cut(s) 106, 190, 245, 577
Hpy166II GTNNAC 6 cut(s) 7, 241, 523, 916, 1057, 1428
Hpy188III TCNNGA 8 cut(s) 304, 542, 557, 704, 1016, 1291, 1301, 1329
Hpy8I GTNNAC 6 cut(s) 7, 241, 523, 916, 1057, 1428
Hpy99I CGWCG 3 cut(s) 164, 167, 194
HpyAV CCTTC 2 cut(s) 727, 1038
HpyCH4III ACNGT 3 cut(s) 505, 877, 1165
HpyCH4IV ACGT 6 cut(s) 108, 162, 210, 243, 390, 1033
HpyCH4V TGCA 4 cut(s) 229, 457, 1355, 1484
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 808, 1112
HpyF3I CTNAG 4 cut(s) 153, 925, 1335, 1348
HpySE526I ACGT 6 cut(s) 108, 162, 210, 243, 390, 1033
Hsp92I GRCGYC 2 cut(s) 162, 740
Hsp92II CATG 5 cut(s) 319, 352, 412, 529, 707
HspAI GCGC 4 cut(s) 144, 343, 419, 802
Kzo9I GATC 6 cut(s) 655, 700, 1012, 1174, 1331, 1409
LguI GCTCTTC 1 cut(s) 1020
LmnI GCTCC 6 cut(s) 189, 221, 278, 352, 664, 967
Lsp1109I GCAGC 2 cut(s) 400, 403
LweI GCATC 1 cut(s) 456
MaeI CTAG 3 cut(s) 422, 1413, 1472
MaeII ACGT 6 cut(s) 108, 162, 210, 243, 390, 1033
MalI GATC 6 cut(s) 657, 702, 1014, 1176, 1333, 1411
MboI GATC 6 cut(s) 655, 700, 1012, 1174, 1331, 1409
MflI RGATCY 3 cut(s) 655, 1331, 1409
MhlI GDGCHC 5 cut(s) 138, 226, 357, 390, 1314
MluCI AATT 2 cut(s) 1091, 1260
MlyI GAGTC 3 cut(s) 27, 71, 1298
MmeI TCCRAC 2 cut(s) 375, 1021
MseI TTAA 4 cut(s) 756, 885, 1002, 1094
MslI CAYNNNNRTG 2 cut(s) 624, 1166
MspI CCGG 4 cut(s) 322, 340, 485, 646
MspR9I CCNGG 6 cut(s) 281, 322, 646, 647, 846, 1118
Mva1269I GAATGC 1 cut(s) 1355
MvaI CCWGG 3 cut(s) 281, 846, 1118
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 3 cut(s) 293, 808, 1112
NciI CCSGG 3 cut(s) 322, 646, 647
NcoI CCATGG 1 cut(s) 408
NdeII GATC 6 cut(s) 655, 700, 1012, 1174, 1331, 1409
NlaIII CATG 5 cut(s) 319, 352, 412, 529, 707
NlaIV GGNNCC 3 cut(s) 185, 223, 406
NmeAIII GCCGAG 1 cut(s) 391
OliI CACNNNNGTG 1 cut(s) 1166
PagI TCATGA 1 cut(s) 703
PaqCI CACCTGC 1 cut(s) 1489
PciSI GCTCTTC 1 cut(s) 1020
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PctI GAATGC 1 cut(s) 1355
PfeI GAWTC 1 cut(s) 1189
PflFI GACNNNGTC 2 cut(s) 80, 1229
PfoI TCCNGGA 2 cut(s) 279, 320
PkrI GCNGC 2 cut(s) 415, 418
PleI GAGTC 3 cut(s) 27, 71, 1298
PmaCI CACGTG 1 cut(s) 391
PmlI CACGTG 1 cut(s) 391
PpsI GAGTC 3 cut(s) 27, 71, 1298
Ppu21I YACGTR 2 cut(s) 244, 391
Psp6I CCWGG 3 cut(s) 279, 844, 1116
PspCI CACGTG 1 cut(s) 391
PspGI CCWGG 3 cut(s) 279, 844, 1116
PspN4I GGNNCC 3 cut(s) 185, 223, 406
PspPI GGNCC 3 cut(s) 295, 539, 1120
PstNI CAGNNNCTG 1 cut(s) 881
PsuI RGATCY 3 cut(s) 655, 1331, 1409
PsyI GACNNNGTC 2 cut(s) 80, 1229
RsaI GTAC 2 cut(s) 107, 792
RsaNI GTAC 2 cut(s) 106, 791
RseI CAYNNNNRTG 2 cut(s) 624, 1166
SapI GCTCTTC 1 cut(s) 1020
SaqAI TTAA 4 cut(s) 756, 885, 1002, 1094
SatI GCNGC 2 cut(s) 414, 417
Sau3AI GATC 6 cut(s) 655, 700, 1012, 1174, 1331, 1409
Sau96I GGNCC 3 cut(s) 295, 539, 1120
SchI GAGTC 3 cut(s) 27, 71, 1298
ScrFI CCNGG 6 cut(s) 281, 322, 646, 647, 846, 1118
SduI GDGCHC 5 cut(s) 138, 226, 357, 390, 1314
SfaNI GCATC 1 cut(s) 456
SinI GGWCC 2 cut(s) 539, 1120
SmaI CCCGGG 1 cut(s) 647
SmiMI CAYNNNNRTG 2 cut(s) 624, 1166
SmlI CTYRAG 2 cut(s) 1214, 1327
SmoI CTYRAG 2 cut(s) 1214, 1327
Sse9I AATT 2 cut(s) 1091, 1260
SsiI CCGC 7 cut(s) 55, 169, 201, 205, 256, 267, 811
SspMI CTAG 3 cut(s) 422, 1413, 1472
StyD4I CCNGG 6 cut(s) 279, 320, 644, 645, 844, 1116
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 3 cut(s) 505, 877, 1165
TaiI ACGT 6 cut(s) 111, 165, 213, 246, 393, 1036
TaqI TCGA 8 cut(s) 36, 75, 87, 189, 558, 1088, 1201, 1282
TasI AATT 2 cut(s) 1091, 1260
TatI WGTACW 1 cut(s) 790
TfiI GAWTC 1 cut(s) 1189
Tru1I TTAA 4 cut(s) 756, 885, 1002, 1094
Tru9I TTAA 4 cut(s) 756, 885, 1002, 1094
TscAI CASTG 1 cut(s) 1069
TseI GCWGC 2 cut(s) 413, 416
TspDTI ATGAA 4 cut(s) 488, 561, 720, 833
TspMI CCCGGG 1 cut(s) 645
TspRI CASTG 1 cut(s) 1069
Tth111I GACNNNGTC 2 cut(s) 80, 1229
VpaK11BI GGWCC 2 cut(s) 539, 1120
XagI CCTNNNNNAGG 1 cut(s) 1139
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XmaI CCCGGG 1 cut(s) 645
XspI CTAG 3 cut(s) 422, 1413, 1472
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.