Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006187.1

Orthogroup ID

OG0000333

Physical Location & Seq

Genomic Coordinates Reverse (-)

46110 .. 56436

Gene Structure 10327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006187.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3129 bp

atgttcatcgtcggtggttataaatggcggatactgatttttcctaaaggaaacaatgtggactacttgtcaatgtatttggatgtggcggattcgcaggcgctgccttatggttggagtagatatgcgcagtttagcttggctatagttaatcagattcacaacaagtactcaattagaaaggacacacagcaccaattcaatgcacgagaaagtgattggggattcacatcattcatgcctctcagtgatctttatgaccccagcaggggttacctggtaaatgatacagtcgttgttgaagccgaggttgttgtccgtaaggtccttgattactggtcgtatgactcaaaaaaggaaactggttatgttgggctcaagaatcagggagcaacttgttatatgaattcactcctccagactttataccatataccttacttcagaaaggctgtgtatcatatgccaacaactgagaatgacatgccttcaggaagcatccctttggctcttcaaagtttattctataagcttcaatacaacgagagcagtgttgcaactaaagaattaaccaagtcttttggatgggatacatatgattcgtttatgcaacatgatgtgcaggaactcaatagagttctatgtgaaaagcttgaggataaaatgaagggaactgtggtggagggtacaatacagcagttatttgaaggacatcacatgaattacattgaatgcatcaatgtggactacaaatctacaagaaaagagtcattttatgatctccagcttgatgtaaaaggatgtcgtgatgtttacgcttcttttgacaagtatgttgaagttgaacgtcttgagggtgacaataagtaccatgcagaagaacatggtttgcaggatgctaagaagggtgtcctgtttattgacttccctccagttcttcagcttcagctaaagcgatttgagtatgattttatgagggacactatggtaaagataaatgatcgctatgaatttcctcttcaacttgaccttgatagggagaatggcaaatatctgtcacctgaatcagataagagtgtgcggaacctctacactcttcatagtgtcttagttcatagtggtggcgtgcatggaggacattattatgcttttatcaggccaacccttactgatcagtggtataagtttgatgatgaacgcgtgacaaaagaggatatgaagagggcattagaggaacagtatggtggtgaggaagagatgccccagaccaatcctggttttaataatactcctttcaagtttacaaaatactcgaacgcatacatgcttgtgtacatccgggacagtgacaaggacaaaataatatgtgatgtggatgagaaggacatagctgaacacctaaggataaggttgaagaaagaacaagaggagaaggaggacaagaggagatataaagcacaggcccatctttatactattattaaggttgctcgagatgaggacctagcagaacaaattggaagggacatatattttgaccttgtggaccatgacaaagttcgtagttttcgaatccagaaacagacgccctttaaccttttcaaggaggaagttgcgaaagagttggggataccagtgcaatttcagcgattctggatttgggccaagaggcaaaaccacacatatcgtcccaaccgaccattgacaccccaggaagaattacaaacagttggacaattgagggaggcatcaaataaaacacacaatgcagagctcaagttgtttttggaagtagagcttgggccggagaaaattcctattcctccaccagacaaaaccaaggatgatattctgcttttctttaagctttatgaacctgagaaacgagaattacggtttgttggtcggctttttgttaagagttctaccaagccaatagaaataatagcaaaaattaatcaaatggctggttttgctcctgatgaagaaattgaactctatgaggaaataaagtttgagccttgtatcatgtgtgaacatcttgacaagaggacctcatttcgattaagtcagattgaagatggggacattatatgctttcaaaaacctactccacttgaaagtgaagaatgtaaatatcctgacgtcccttcatttttggaatatgtacacaaccgtcagattgttcattttcgctctttggagaaaccaaaagaggatgatttttctttagaattgtcaaagctacacacttatgatgatgtggtggagaaggtggcttcccaaattggtttggatgatcctaccaaaatcagactcactgcgcataactgctattctcaacaacctaaaccccaacccatcaaatatcgaggagtagagcatttaacagatatgctggtccactataatcaaagttctgatattttgtattatgaagtcttggacatccccctgccagaattgcaaggcctaaaaaatctgaaagttgcatttcatcatgctacaaaagatgaggtggtgattcacaatataagattgcccaagcagagcactgttggggatgtgattaatgtgctaaaaacgaaggtagagctatctcaaccaaatgcagaactccgacttcttgaggttttctatcacaagatctacaagatcttcccacacagtgaaaaaattgagaatataaatgaccagtactggacattgcgtgcagaggagattccagaagaagagaaaaacttgggtcttcatgaccgcttgattcatgtttaccactttacaaaagagactgcacagaaccagatgcaggtacagaattttggggaacctttcttcttggttattcatgaaggtgaaactttagctgaagtgaaggcacgcatacaaaagaaattgcaggtccctgatgaagagttcgcaaagtggaagtttgcattcttgtcattgggtcgtcccgagtacctgcaggactccgatatagtttccagtcgttttcagaggagagatgtttatggtgcttgggagcagtacctggggttggagcatgctgatactgctcctaagagatcatatgcagtaaatcagaaccgtcacacatatgagaagccagttaaaatatacaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203

Pfam Domains

Protein Families

MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

1042

Amino Acids

122.69

Weight (kDa)

5.8

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca	FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica	MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica	Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis	pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis	RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata	RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora	Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii	Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa	Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha	Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana	Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AatII	GACGTC	1 cut(s)	2148
Acc16I	TGCGCA	2 cut(s)	129, 2325
Acc36I	ACCTGC	3 cut(s)	2800, 2890, 2973
AccII	CGCG	1 cut(s)	1200
AciI	CCGC	4 cut(s)	28, 89, 1081, 2758
AclWI	GGATC	1 cut(s)	2294
AcsI	RAATTY	4 cut(s)	406, 1010, 1812, 2818
AcuI	CTGAAG	5 cut(s)	427, 474, 923, 929, 2889
AcyI	GRCGYC	2 cut(s)	1586, 2145
AdeI	CACNNNGTG	1 cut(s)	2669
AfaI	GTAC	9 cut(s)	170, 688, 869, 1334, 2169, 2699, 2814, 2963, 3032
AfiI	CCNNNNNNNGG	6 cut(s)	268, 269, 1036, 1603, 2809, 3040
AflIII	ACRYGT	1 cut(s)	1198
AhdI	GACNNNNNGTC	1 cut(s)	67
AjnI	CCWGG	4 cut(s)	276, 1273, 1710, 3033
AjuI	GAANNNNNNNTTGG	2 cut(s)	1782, 1814
Alw21I	GWGCWC	2 cut(s)	1776, 2555
Alw26I	GTCTC	1 cut(s)	2783
AlwI	GGATC	1 cut(s)	2294
AlwNI	CAGNNNCTG	2 cut(s)	103, 3034
Ama87I	CYCGRG	2 cut(s)	1491, 2957
AoxI	GGCC	5 cut(s)	1157, 1461, 1662, 1802, 2470
ApeKI	GCWGC	1 cut(s)	103
ApoI	RAATTY	4 cut(s)	406, 1010, 1812, 2818
ArsI	GACNNNNNNTTYG	2 cut(s)	1517, 1549
AseI	ATTAAT	2 cut(s)	1956, 2571
AspLEI	GCGC	3 cut(s)	103, 130, 2326
AspS9I	GGNCC	9 cut(s)	325, 1462, 1501, 1546, 1662, 1802, 2052, 2401, 2902
AsuC2I	CCSGG	1 cut(s)	1340
AsuHPI	GGTGA	5 cut(s)	869, 1050, 1259, 2533, 2867
AsuII	TTCGAA	1 cut(s)	1570
AvaI	CYCGRG	2 cut(s)	1491, 2957
AvaII	GGWCC	6 cut(s)	325, 1501, 1546, 2052, 2401, 2902
AxyI	CCTNAGG	1 cut(s)	1400
BaeI	ACNNNNGTAYC	2 cut(s)	279, 312
BanII	GRGCYC	2 cut(s)	378, 1776
BauI	CACGAG	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	2741
Bbv12I	GWGCWC	2 cut(s)	1776, 2555
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	4 cut(s)	579, 1473, 2075, 2369
BciT130I	CCWGG	4 cut(s)	278, 1275, 1712, 3035
BciVI	GTATCC	3 cut(s)	24, 583, 1623
BclI	TGATCA	1 cut(s)	1171
BcnI	CCSGG	1 cut(s)	1340
BcoDI	GTCTC	1 cut(s)	2783
BfaI	CTAG	1 cut(s)	1505
BfmI	CTRYAG	2 cut(s)	144, 2966
BfoI	RGCGCY	1 cut(s)	104
BfuAI	ACCTGC	3 cut(s)	2800, 2890, 2973
BfuI	GTATCC	3 cut(s)	24, 583, 1623
BglII	AGATCT	2 cut(s)	2646, 2655
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
BmcAI	AGTACT	2 cut(s)	170, 2699
Bme1390I	CCNGG	5 cut(s)	278, 1275, 1340, 1712, 3035
Bme18I	GGWCC	6 cut(s)	325, 1501, 1546, 2052, 2401, 2902
BmeRI	GACNNNNNGTC	1 cut(s)	67
BmeT110I	CYCGRG	2 cut(s)	1491, 2957
BmgT120I	GGNCC	9 cut(s)	325, 1462, 1501, 1546, 1662, 1802, 2052, 2401, 2902
BmiI	GGNNCC	3 cut(s)	1085, 2829, 2904
BmrFI	CCNGG	5 cut(s)	278, 1275, 1340, 1712, 3035
BmsI	GCATC	6 cut(s)	507, 744, 886, 1248, 1757, 2796
BpiI	GAAGAC	1 cut(s)	2741
BpmI	CTGGAG	3 cut(s)	401, 767, 915
Bpu14I	TTCGAA	1 cut(s)	1570
BpuEI	CTTGAG	5 cut(s)	362, 674, 872, 1760, 2648
BpuMI	CCSGG	1 cut(s)	1340
BsaBI	GATNNNNATC	1 cut(s)	229
BsaHI	GRCGYC	2 cut(s)	1586, 2145
BsaJI	CCNNGG	4 cut(s)	306, 1710, 1839, 3034
Bsc4I	CCNNNNNNNGG	6 cut(s)	268, 269, 1036, 1603, 2809, 3040
Bse1I	ACTGG	8 cut(s)	341, 367, 932, 1634, 2695, 2705, 2988, 3110
Bse21I	CCTNAGG	1 cut(s)	1400
Bse3DI	GCAATG	1 cut(s)	2705
Bse8I	GATNNNNATC	1 cut(s)	229
BseBI	CCWGG	4 cut(s)	278, 1275, 1712, 3035
BseDI	CCNNGG	4 cut(s)	306, 1710, 1839, 3034
BseJI	GATNNNNATC	1 cut(s)	229
BseLI	CCNNNNNNNGG	6 cut(s)	268, 269, 1036, 1603, 2809, 3040
BseMI	GCAATG	1 cut(s)	2705
BseMII	CTCAG	3 cut(s)	259, 465, 1869
BseNI	ACTGG	8 cut(s)	341, 367, 932, 1634, 2695, 2705, 2988, 3110
BseRI	GAGGAG	6 cut(s)	404, 1442, 1459, 2388, 2732, 3016
BseXI	GCAGC	1 cut(s)	90
BseYI	CCCAGC	1 cut(s)	263
BsgI	GTGCAG	3 cut(s)	641, 2733, 2778
Bsh1236I	CGCG	1 cut(s)	1200
BshFI	GGCC	5 cut(s)	1159, 1463, 1664, 1804, 2472
BsiHKAI	GWGCWC	2 cut(s)	1776, 2555
BsiHKCI	CYCGRG	2 cut(s)	1491, 2957
BsiSI	CCGG	2 cut(s)	1339, 1805
BslFI	GGGAC	8 cut(s)	992, 1355, 1538, 1674, 2099, 2132, 2888, 2940
BslI	CCNNNNNNNGG	6 cut(s)	268, 269, 1036, 1603, 2809, 3040
BsmAI	GTCTC	1 cut(s)	2783
BsmFI	GGGAC	8 cut(s)	992, 1355, 1538, 1674, 2099, 2132, 2888, 2940
BsmI	GAATGC	2 cut(s)	737, 2936
BsnI	GGCC	5 cut(s)	1159, 1463, 1664, 1804, 2472
BsoBI	CYCGRG	2 cut(s)	1491, 2957
Bsp119I	TTCGAA	1 cut(s)	1570
Bsp1286I	GDGCHC	3 cut(s)	378, 1776, 2555
Bsp1407I	TGTACA	2 cut(s)	1332, 2167
Bsp143I	GATC	8 cut(s)	250, 778, 1000, 1171, 2299, 2646, 2655, 3068
BspACI	CCGC	4 cut(s)	28, 89, 1081, 2758
BspANI	GGCC	5 cut(s)	1159, 1463, 1664, 1804, 2472
BspCNI	CTCAG	3 cut(s)	258, 466, 1870
BspFNI	CGCG	1 cut(s)	1200
BspHI	TCATGA	2 cut(s)	2752, 2848
BspLI	GGNNCC	3 cut(s)	1085, 2829, 2904
BspMAI	CTGCAG	1 cut(s)	2970
BspMI	ACCTGC	3 cut(s)	2800, 2890, 2973
BspPI	GGATC	1 cut(s)	2294
BspQI	GCTCTTC	1 cut(s)	516
BspT104I	TTCGAA	1 cut(s)	1570
BsrDI	GCAATG	1 cut(s)	2705
BsrGI	TGTACA	2 cut(s)	1332, 2167
BsrI	ACTGG	8 cut(s)	341, 367, 932, 1634, 2695, 2705, 2988, 3110
BssECI	CCNNGG	4 cut(s)	306, 1710, 1839, 3034
BssMI	GATC	8 cut(s)	250, 778, 1000, 1171, 2299, 2646, 2655, 3068
BssNI	GRCGYC	2 cut(s)	1586, 2145
BssSI	CACGAG	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	1839
Bst2BI	CACGAG	1 cut(s)	207
Bst2UI	CCWGG	4 cut(s)	278, 1275, 1712, 3035
Bst6I	CTCTTC	7 cut(s)	516, 1023, 1101, 1214, 1248, 2727, 2907
BstACI	GRCGYC	2 cut(s)	1586, 2145
BstAPI	GCANNNNNTGC	1 cut(s)	103
BstAUI	TGTACA	2 cut(s)	1332, 2167
BstBI	TTCGAA	1 cut(s)	1570
BstC8I	GCNNGC	5 cut(s)	99, 1127, 2712, 2881, 3048
BstDEI	CTNAG	7 cut(s)	245, 474, 900, 1108, 1400, 1878, 3063
BstEII	GGTNACC	1 cut(s)	272
BstENI	CCTNNNNNAGG	1 cut(s)	1601
BstFNI	CGCG	1 cut(s)	1200
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	3 cut(s)	103, 130, 2326
BstKTI	GATC	8 cut(s)	253, 781, 1003, 1174, 2302, 2649, 2658, 3071
BstMAI	GTCTC	1 cut(s)	2783
BstMBI	GATC	8 cut(s)	250, 778, 1000, 1171, 2299, 2646, 2655, 3068
BstMWI	GCNNNNNNNGC	5 cut(s)	103, 1645, 1973, 2464, 3056
BstNI	CCWGG	4 cut(s)	278, 1275, 1712, 3035
BstNSI	RCATGY	3 cut(s)	487, 1327, 3050
BstPI	GGTNACC	1 cut(s)	272
BstSCI	CCNGG	5 cut(s)	276, 1273, 1338, 1710, 3033
BstSFI	CTRYAG	2 cut(s)	144, 2966
BstUI	CGCG	1 cut(s)	1200
BstV1I	GCAGC	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	2741
BstX2I	RGATCY	2 cut(s)	2646, 2655
BstYI	RGATCY	2 cut(s)	2646, 2655
Bsu36I	CCTNAGG	1 cut(s)	1400
BsuI	GTATCC	3 cut(s)	24, 583, 1623
BsuRI	GGCC	5 cut(s)	1159, 1463, 1664, 1804, 2472
BtsI	GCAGTG	2 cut(s)	556, 2319
BtsIMutI	CAGTG	8 cut(s)	253, 556, 1181, 1351, 1641, 2319, 2553, 2674
BveI	ACCTGC	3 cut(s)	2800, 2890, 2973
Cac8I	GCNNGC	5 cut(s)	99, 1127, 2712, 2881, 3048
CaiI	CAGNNNCTG	2 cut(s)	103, 3034
CciI	TCATGA	2 cut(s)	2752, 2848
CfoI	GCGC	3 cut(s)	103, 130, 2326
Cfr13I	GGNCC	9 cut(s)	325, 1462, 1501, 1546, 1662, 1802, 2052, 2401, 2902
CseI	GACGC	1 cut(s)	1594
CsiI	ACCWGGT	1 cut(s)	276
Csp6I	GTAC	9 cut(s)	169, 687, 868, 1333, 2168, 2698, 2813, 2962, 3031
CviQI	GTAC	9 cut(s)	169, 687, 868, 1333, 2168, 2698, 2813, 2962, 3031
DdeI	CTNAG	7 cut(s)	245, 474, 900, 1108, 1400, 1878, 3063
DpnI	GATC	8 cut(s)	252, 780, 1002, 1173, 2301, 2648, 2657, 3070
DpnII	GATC	8 cut(s)	250, 778, 1000, 1171, 2299, 2646, 2655, 3068
DraIII	CACNNNGTG	1 cut(s)	2669
DriI	GACNNNNNGTC	1 cut(s)	67
Eam1104I	CTCTTC	7 cut(s)	516, 1023, 1101, 1214, 1248, 2727, 2907
Eam1105I	GACNNNNNGTC	1 cut(s)	67
EarI	CTCTTC	7 cut(s)	516, 1023, 1101, 1214, 1248, 2727, 2907
EciI	GGCGGA	2 cut(s)	43, 104
Ecl136II	GAGCTC	1 cut(s)	1774
Eco130I	CCWWGG	1 cut(s)	1839
Eco147I	AGGCCT	1 cut(s)	2472
Eco24I	GRGCYC	2 cut(s)	378, 1776
Eco47I	GGWCC	6 cut(s)	325, 1501, 1546, 2052, 2401, 2902
Eco53kI	GAGCTC	1 cut(s)	1774
Eco57I	CTGAAG	5 cut(s)	427, 474, 923, 929, 2889
Eco81I	CCTNAGG	1 cut(s)	1400
Eco88I	CYCGRG	2 cut(s)	1491, 2957
Eco91I	GGTNACC	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	1774
EcoNI	CCTNNNNNAGG	1 cut(s)	1601
EcoO109I	RGGNCCY	4 cut(s)	325, 1501, 2052, 2902
EcoO65I	GGTNACC	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	406
EcoRII	CCWGG	4 cut(s)	276, 1273, 1710, 3033
EcoT14I	CCWWGG	1 cut(s)	1839
EcoT22I	ATGCAT	1 cut(s)	737
EcoT38I	GRGCYC	2 cut(s)	378, 1776
ErhI	CCWWGG	1 cut(s)	1839
FalI	AAGNNNNNCTT	4 cut(s)	487, 519, 1782, 1814
FaqI	GGGAC	8 cut(s)	992, 1355, 1538, 1674, 2099, 2132, 2888, 2940
FauNDI	CATATG	4 cut(s)	462, 595, 3073, 3100
FbaI	TGATCA	1 cut(s)	1171
Fnu4HI	GCNGC	1 cut(s)	104
FriOI	GRGCYC	2 cut(s)	378, 1776
Fsp4HI	GCNGC	1 cut(s)	104
FspBI	CTAG	1 cut(s)	1505
FspI	TGCGCA	2 cut(s)	129, 2325
GlaI	GCGC	3 cut(s)	102, 129, 2325
GluI	GCNGC	1 cut(s)	104
GsaI	CCCAGC	1 cut(s)	267
GsuI	CTGGAG	3 cut(s)	401, 767, 915
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	5 cut(s)	1159, 1463, 1664, 1804, 2472
HapII	CCGG	2 cut(s)	1339, 1805
HgaI	GACGC	1 cut(s)	1594
HhaI	GCGC	3 cut(s)	103, 130, 2326
Hin1I	GRCGYC	2 cut(s)	1586, 2145
Hin6I	GCGC	3 cut(s)	101, 128, 2324
HinP1I	GCGC	3 cut(s)	101, 128, 2324
HindIII	AAGCTT	3 cut(s)	530, 650, 1865
HpaII	CCGG	2 cut(s)	1339, 1805
HphI	GGTGA	5 cut(s)	869, 1050, 1259, 2533, 2867
Hpy99I	CGWCG	1 cut(s)	14
HpyCH4IV	ACGT	2 cut(s)	847, 2145
HpyF10VI	GCNNNNNNNGC	5 cut(s)	103, 1645, 1973, 2464, 3056
HpyF3I	CTNAG	7 cut(s)	245, 474, 900, 1108, 1400, 1878, 3063
HpySE526I	ACGT	2 cut(s)	847, 2145
Hsp92I	GRCGYC	2 cut(s)	1586, 2145
HspAI	GCGC	3 cut(s)	101, 128, 2324
Ksp22I	TGATCA	1 cut(s)	1171
Kzo9I	GATC	8 cut(s)	250, 778, 1000, 1171, 2299, 2646, 2655, 3068
LguI	GCTCTTC	1 cut(s)	516
LmnI	GCTCC	5 cut(s)	389, 1981, 3025, 3043, 3064
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	6 cut(s)	507, 744, 886, 1248, 1757, 2796
MabI	ACCWGGT	1 cut(s)	276
MaeI	CTAG	1 cut(s)	1505
MaeII	ACGT	2 cut(s)	847, 2145
MaeIII	GTNAC	6 cut(s)	272, 857, 1056, 1201, 1346, 3092
MalI	GATC	8 cut(s)	252, 780, 1002, 1173, 2301, 2648, 2657, 3070
MboI	GATC	8 cut(s)	250, 778, 1000, 1171, 2299, 2646, 2655, 3068
MfeI	CAATTG	1 cut(s)	1736
MflI	RGATCY	2 cut(s)	2646, 2655
MhlI	GDGCHC	3 cut(s)	378, 1776, 2555
MluI	ACGCGT	1 cut(s)	1198
MlyI	GAGTC	4 cut(s)	341, 776, 2310, 2966
MmeI	TCCRAC	4 cut(s)	95, 1711, 2644, 3021
Mph1103I	ATGCAT	1 cut(s)	737
MslI	CAYNNNNRTG	7 cut(s)	740, 1119, 1143, 1328, 2253, 2853, 3099
MspI	CCGG	2 cut(s)	1339, 1805
MspR9I	CCNGG	5 cut(s)	278, 1275, 1340, 1712, 3035
MunI	CAATTG	1 cut(s)	1736
Mva1269I	GAATGC	2 cut(s)	737, 2936
MvaI	CCWGG	4 cut(s)	278, 1275, 1712, 3035
MvnI	CGCG	1 cut(s)	1200
MwoI	GCNNNNNNNGC	5 cut(s)	103, 1645, 1973, 2464, 3056
NciI	CCSGG	1 cut(s)	1340
NdeI	CATATG	4 cut(s)	462, 595, 3073, 3100
NdeII	GATC	8 cut(s)	250, 778, 1000, 1171, 2299, 2646, 2655, 3068
NlaIV	GGNNCC	3 cut(s)	1085, 2829, 2904
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	5 cut(s)	857, 1056, 1201, 1346, 3092
NsbI	TGCGCA	2 cut(s)	129, 2325
NsiI	ATGCAT	1 cut(s)	737
NspI	RCATGY	3 cut(s)	487, 1327, 3050
NspV	TTCGAA	1 cut(s)	1570
PaeI	GCATGC	1 cut(s)	3050
PaeR7I	CTCGAG	1 cut(s)	1491
PagI	TCATGA	2 cut(s)	2752, 2848
PceI	AGGCCT	1 cut(s)	2472
PciSI	GCTCTTC	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	2 cut(s)	1567, 1693
PctI	GAATGC	2 cut(s)	737, 2936
PfoI	TCCNGGA	1 cut(s)	1338
PkrI	GCNGC	1 cut(s)	105
PleI	GAGTC	4 cut(s)	341, 775, 2310, 2966
PpsI	GAGTC	4 cut(s)	341, 775, 2310, 2966
PpuMI	RGGWCCY	4 cut(s)	325, 1501, 2052, 2902
PshBI	ATTAAT	2 cut(s)	1956, 2571
PsiI	TTATAA	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	1776
Psp5II	RGGWCCY	4 cut(s)	325, 1501, 2052, 2902
Psp6I	CCWGG	4 cut(s)	276, 1273, 1710, 3033
PspEI	GGTNACC	1 cut(s)	272
PspFI	CCCAGC	1 cut(s)	263
PspGI	CCWGG	4 cut(s)	276, 1273, 1710, 3033
PspN4I	GGNNCC	3 cut(s)	1085, 2829, 2904
PspPI	GGNCC	9 cut(s)	325, 1462, 1501, 1546, 1662, 1802, 2052, 2401, 2902
PspPPI	RGGWCCY	4 cut(s)	325, 1501, 2052, 2902
PstI	CTGCAG	1 cut(s)	2970
PstNI	CAGNNNCTG	2 cut(s)	103, 3034
PsuI	RGATCY	2 cut(s)	2646, 2655
RsaI	GTAC	9 cut(s)	170, 688, 869, 1334, 2169, 2699, 2814, 2963, 3032
RsaNI	GTAC	9 cut(s)	169, 687, 868, 1333, 2168, 2698, 2813, 2962, 3031
RseI	CAYNNNNRTG	7 cut(s)	740, 1119, 1143, 1328, 2253, 2853, 3099
SacI	GAGCTC	1 cut(s)	1776
SapI	GCTCTTC	1 cut(s)	516
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	8 cut(s)	250, 778, 1000, 1171, 2299, 2646, 2655, 3068
Sau96I	GGNCC	9 cut(s)	325, 1462, 1501, 1546, 1662, 1802, 2052, 2401, 2902
SbfI	CCTGCAGG	1 cut(s)	2970
ScaI	AGTACT	2 cut(s)	170, 2699
SchI	GAGTC	4 cut(s)	341, 776, 2310, 2966
ScrFI	CCNGG	5 cut(s)	278, 1275, 1340, 1712, 3035
SdaI	CCTGCAGG	1 cut(s)	2970
SduI	GDGCHC	3 cut(s)	378, 1776, 2555
SexAI	ACCWGGT	1 cut(s)	276
SfaNI	GCATC	6 cut(s)	507, 744, 886, 1248, 1757, 2796
SfcI	CTRYAG	2 cut(s)	144, 2966
Sfr274I	CTCGAG	1 cut(s)	1491
SfuI	TTCGAA	1 cut(s)	1570
SinI	GGWCC	6 cut(s)	325, 1501, 1546, 2052, 2401, 2902
SlaI	CTCGAG	1 cut(s)	1491
SmiMI	CAYNNNNRTG	7 cut(s)	740, 1119, 1143, 1328, 2253, 2853, 3099
SmlI	CTYRAG	6 cut(s)	377, 653, 851, 1491, 1775, 2627
SmoI	CTYRAG	6 cut(s)	377, 653, 851, 1491, 1775, 2627
SphI	GCATGC	1 cut(s)	3050
Sse8387I	CCTGCAGG	1 cut(s)	2970
SseBI	AGGCCT	1 cut(s)	2472
SsiI	CCGC	4 cut(s)	28, 89, 1081, 2758
SspMI	CTAG	1 cut(s)	1505
SstI	GAGCTC	1 cut(s)	1776
StuI	AGGCCT	1 cut(s)	2472
StyD4I	CCNGG	5 cut(s)	276, 1273, 1338, 1710, 3033
StyI	CCWWGG	1 cut(s)	1839
TaiI	ACGT	2 cut(s)	850, 2148
TaqI	TCGA	5 cut(s)	1313, 1492, 1570, 2062, 2371
TatI	WGTACW	4 cut(s)	168, 1332, 2167, 2697
TscAI	CASTG	8 cut(s)	253, 556, 1181, 1351, 1641, 2326, 2560, 2674
TseFI	GTSAC	5 cut(s)	857, 1056, 1201, 1346, 3092
TseI	GCWGC	1 cut(s)	103
Tsp45I	GTSAC	5 cut(s)	857, 1056, 1201, 1346, 3092
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	8 cut(s)	253, 556, 1181, 1351, 1641, 2326, 2560, 2674
VpaK11BI	GGWCC	6 cut(s)	325, 1501, 1546, 2052, 2401, 2902
VspI	ATTAAT	2 cut(s)	1956, 2571
XagI	CCTNNNNNAGG	1 cut(s)	1601
XapI	RAATTY	4 cut(s)	406, 1010, 1812, 2818
XceI	RCATGY	3 cut(s)	487, 1327, 3050
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1271
XhoI	CTCGAG	1 cut(s)	1491
XspI	CTAG	1 cut(s)	1505
ZraI	GACGTC	1 cut(s)	2146
ZrmI	AGTACT	2 cut(s)	170, 2699
Zsp2I	ATGCAT	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.