Rorug03G0162800

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
13559064 .. 13560171
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0162800.1

Sequence Viewer

Length: 900 bp
ATGTCTTCTCAAAAAAAGAAAAGTCCGGCCGCCATGGAATCGCTACGTCTGAACCTGTTCACAGTGGTTGGCGAGTGTGTGAGGATTCTCAAAGCAGAGTATATATATCTGTTCTATCTCTCTTTTCTCTATCTGCTCCCTAAATCCTTCTCCTCTATAGCCTATCCGACCCGTCAAAATCTCTTAAAGGCCGAGCATCCGTTTCCGAACAAGTTCCAATCTGAGACTCTCTTAGCCCTTGCTTTCTCATCCCTTAGCTTCATCTTCTCCTACTCGGGATTCATCCACTACAGTTTGGGTCTCTGGTCAATCACATACGCAGTATATTATGGCCGACCAGTTAAACTAATCTCGGCTCTCTTTAAATCTGCATTTGTCTCATTCCTTCCTCTCCTCGGTATGGTCATAATTTCTATTCCGAACATGGTTACGTTGTTTAATCTTGTTCATTTGGGGCAAAATTTATTTAAGGTAATTAGAGGGAGTGAGGAGAGTAAGCTGGATATTTTAGATATTGTTATATTGCTGGGTAGTGTACATCTTCACTTGGAGTGGAACCTTGCATCGTCAATTGTTGTGATAGAATCGCGTGGGCTGGTAGAGTCTATGAGAAAAAGCAGCTCTTTGATGAAGGGAAACAAAATGTTGGGTTTGATGATGCTTTTGATTTTTGGGACTCCTGCCCTGATTTTAGGGTTGTTCAGTGATTGGATTCTACAAGTCCAGTTGAGTTTAACAGGGGATCTGAGCCATGGTGGATGGTGGAGGATGGTGACTTCTGAATTTGTGGTACAAATTGTGATAGTTTCAGTCCTTTTCACGCTCGTTTTGTTGTTCAACACCGTAAGCAATATCGTTTTGTATCTCTATTGCATCAAGGCAGAACGGCCCACTCACTGA

Protein Analysis

299

Amino Acids

33.72

Weight (kDa)

9.41

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 589
AciI CCGC 1 cut(s) 30
AclWI GGATC 1 cut(s) 750
AcoI YGGCCR 2 cut(s) 27, 331
AcsI RAATTY 2 cut(s) 460, 782
AfaI GTAC 2 cut(s) 537, 792
AfiI CCNNNNNNNGG 2 cut(s) 395, 400
AgsI TTSAA 1 cut(s) 838
AluBI AGCT 3 cut(s) 258, 499, 621
AluI AGCT 3 cut(s) 258, 499, 621
Alw26I GTCTC 3 cut(s) 218, 305, 382
AlwI GGATC 1 cut(s) 750
Ama87I CYCGRG 1 cut(s) 274
AoxI GGCC 4 cut(s) 27, 189, 331, 887
ApeKI GCWGC 1 cut(s) 618
ApoI RAATTY 2 cut(s) 460, 782
Asp700I GAANNNNTTC 2 cut(s) 56, 212
AspS9I GGNCC 1 cut(s) 888
AsuHPI GGTGA 1 cut(s) 784
AvaI CYCGRG 1 cut(s) 274
BbvI GCAGC 1 cut(s) 630
BccI CCATC 2 cut(s) 753, 763
BcoDI GTCTC 3 cut(s) 218, 305, 382
BfmI CTRYAG 2 cut(s) 156, 289
BisI GCNGC 2 cut(s) 30, 619
BlsI GCNGC 2 cut(s) 31, 620
BmeT110I CYCGRG 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 888
BmiI GGNNCC 1 cut(s) 557
BmsI GCATC 4 cut(s) 205, 572, 648, 882
Bpu10I CCTNAGC 1 cut(s) 254
BsaI GGTCTC 1 cut(s) 305
BsaJI CCNNGG 3 cut(s) 33, 394, 751
Bsc4I CCNNNNNNNGG 2 cut(s) 395, 400
Bse1I ACTGG 2 cut(s) 338, 724
BseDI CCNNGG 3 cut(s) 33, 394, 751
BseGI GGATG 5 cut(s) 196, 248, 282, 764, 774
BseLI CCNNNNNNNGG 2 cut(s) 395, 400
BseMII CTCAG 2 cut(s) 213, 737
BseNI ACTGG 2 cut(s) 338, 724
BseRI GAGGAG 3 cut(s) 142, 383, 503
BseX3I CGGCCG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 630
BseYI CCCAGC 1 cut(s) 526
Bsh1236I CGCG 1 cut(s) 589
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 4 cut(s) 29, 191, 333, 889
BsiEI CGRYCG 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 274
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 688
BslI CCNNNNNNNGG 2 cut(s) 395, 400
BsmAI GTCTC 3 cut(s) 218, 305, 382
BsmFI GGGAC 1 cut(s) 688
BsnI GGCC 4 cut(s) 29, 191, 333, 889
Bso31I GGTCTC 1 cut(s) 305
BsoBI CYCGRG 1 cut(s) 274
Bsp1407I TGTACA 1 cut(s) 535
Bsp143I GATC 1 cut(s) 742
Bsp19I CCATGG 2 cut(s) 33, 751
BspACI CCGC 1 cut(s) 30
BspANI GGCC 4 cut(s) 29, 191, 333, 889
BspCNI CTCAG 2 cut(s) 214, 738
BspFNI CGCG 1 cut(s) 589
BspLI GGNNCC 1 cut(s) 557
BspPI GGATC 1 cut(s) 750
BspTNI GGTCTC 1 cut(s) 305
BsrGI TGTACA 1 cut(s) 535
BsrI ACTGG 2 cut(s) 338, 724
BssECI CCNNGG 3 cut(s) 33, 394, 751
BssMI GATC 1 cut(s) 742
BssT1I CCWWGG 2 cut(s) 33, 751
Bst4CI ACNGT 3 cut(s) 64, 293, 844
BstAUI TGTACA 1 cut(s) 535
BstDEI CTNAG 4 cut(s) 222, 232, 254, 746
BstDSI CCRYGG 2 cut(s) 33, 751
BstF5I GGATG 5 cut(s) 196, 248, 282, 764, 774
BstFNI CGCG 1 cut(s) 589
BstKTI GATC 1 cut(s) 745
BstMAI GTCTC 3 cut(s) 218, 305, 382
BstMBI GATC 1 cut(s) 742
BstMCI CGRYCG 1 cut(s) 30
BstSFI CTRYAG 2 cut(s) 156, 289
BstUI CGCG 1 cut(s) 589
BstV1I GCAGC 1 cut(s) 630
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
BstZI CGGCCG 1 cut(s) 27
BsuRI GGCC 4 cut(s) 29, 191, 333, 889
BtgI CCRYGG 2 cut(s) 33, 751
BtsCI GGATG 5 cut(s) 196, 248, 282, 764, 774
BtsIMutI CAGTG 3 cut(s) 69, 709, 895
Cfr13I GGNCC 1 cut(s) 888
Csp6I GTAC 2 cut(s) 536, 791
CviAII CATG 3 cut(s) 34, 424, 752
CviQI GTAC 2 cut(s) 536, 791
DdeI CTNAG 4 cut(s) 222, 232, 254, 746
DpnI GATC 1 cut(s) 744
DpnII GATC 1 cut(s) 742
DraI TTTAAA 1 cut(s) 364
EaeI YGGCCR 2 cut(s) 27, 331
EagI CGGCCG 1 cut(s) 27
EclXI CGGCCG 1 cut(s) 27
Eco130I CCWWGG 2 cut(s) 33, 751
Eco31I GGTCTC 1 cut(s) 305
Eco52I CGGCCG 1 cut(s) 27
Eco88I CYCGRG 1 cut(s) 274
EcoT14I CCWWGG 2 cut(s) 33, 751
ErhI CCWWGG 2 cut(s) 33, 751
FaeI CATG 3 cut(s) 37, 427, 755
FalI AAGNNNNNCTT 2 cut(s) 607, 639
FaqI GGGAC 1 cut(s) 688
FatI CATG 3 cut(s) 33, 423, 751
Fnu4HI GCNGC 2 cut(s) 30, 619
FokI GGATG 5 cut(s) 183, 235, 269, 771, 781
Fsp4HI GCNGC 2 cut(s) 30, 619
GluI GCNGC 2 cut(s) 30, 619
GsaI CCCAGC 1 cut(s) 530
HaeIII GGCC 4 cut(s) 29, 191, 333, 889
HapII CCGG 1 cut(s) 26
Hin1II CATG 3 cut(s) 37, 427, 755
HinfI GANTC 8 cut(s) 38, 85, 226, 279, 584, 602, 676, 712
HpaII CCGG 1 cut(s) 26
HphI GGTGA 1 cut(s) 784
Hpy166II GTNNAC 2 cut(s) 60, 536
Hpy188I TCNGA 7 cut(s) 51, 168, 207, 223, 420, 747, 781
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 2 cut(s) 60, 536
HpyAV CCTTC 3 cut(s) 157, 395, 625
HpyCH4III ACNGT 3 cut(s) 64, 293, 844
HpyCH4IV ACGT 2 cut(s) 46, 431
HpyCH4V TGCA 3 cut(s) 371, 563, 873
HpyF3I CTNAG 4 cut(s) 222, 232, 254, 746
HpySE526I ACGT 2 cut(s) 46, 431
Hsp92II CATG 3 cut(s) 37, 427, 755
Kzo9I GATC 1 cut(s) 742
LmnI GCTCC 1 cut(s) 141
Lsp1109I GCAGC 1 cut(s) 630
LweI GCATC 4 cut(s) 205, 572, 648, 882
MaeII ACGT 2 cut(s) 46, 431
MaeIII GTNAC 2 cut(s) 427, 772
MalI GATC 1 cut(s) 744
MboI GATC 1 cut(s) 742
MboII GAAGA 2 cut(s) 256, 533
MfeI CAATTG 1 cut(s) 570
MflI RGATCY 1 cut(s) 742
MluCI AATT 6 cut(s) 408, 460, 474, 570, 782, 795
MlyI GAGTC 3 cut(s) 220, 611, 670
MmeI TCCRAC 1 cut(s) 191
MnlI CCTC 7 cut(s) 75, 163, 399, 404, 473, 481, 759
MroXI GAANNNNTTC 2 cut(s) 56, 212
MseI TTAA 6 cut(s) 185, 342, 363, 438, 468, 734
MspI CCGG 1 cut(s) 26
MunI CAATTG 1 cut(s) 570
MvnI CGCG 1 cut(s) 589
NcoI CCATGG 2 cut(s) 33, 751
NdeII GATC 1 cut(s) 742
NlaIII CATG 3 cut(s) 37, 427, 755
NlaIV GGNNCC 1 cut(s) 557
NmeAIII GCCGAG 2 cut(s) 217, 332
NmuCI GTSAC 1 cut(s) 772
PdmI GAANNNNTTC 2 cut(s) 56, 212
PfeI GAWTC 5 cut(s) 38, 85, 279, 584, 712
PkrI GCNGC 2 cut(s) 31, 620
PleI GAGTC 3 cut(s) 220, 610, 670
PpsI GAGTC 3 cut(s) 220, 610, 670
PspFI CCCAGC 1 cut(s) 526
PspN4I GGNNCC 1 cut(s) 557
PspPI GGNCC 1 cut(s) 888
PsuI RGATCY 1 cut(s) 742
RsaI GTAC 2 cut(s) 537, 792
RsaNI GTAC 2 cut(s) 536, 791
SaqAI TTAA 6 cut(s) 185, 342, 363, 438, 468, 734
SatI GCNGC 2 cut(s) 30, 619
Sau3AI GATC 1 cut(s) 742
Sau96I GGNCC 1 cut(s) 888
SchI GAGTC 3 cut(s) 220, 611, 670
SetI ASST 8 cut(s) 49, 57, 260, 434, 474, 501, 561, 623
SfaNI GCATC 4 cut(s) 205, 572, 648, 882
SfcI CTRYAG 2 cut(s) 156, 289
Sse9I AATT 6 cut(s) 408, 460, 474, 570, 782, 795
SsiI CCGC 1 cut(s) 30
StyI CCWWGG 2 cut(s) 33, 751
TaaI ACNGT 3 cut(s) 64, 293, 844
TaiI ACGT 2 cut(s) 49, 434
TasI AATT 6 cut(s) 408, 460, 474, 570, 782, 795
TatI WGTACW 1 cut(s) 535
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 5 cut(s) 38, 85, 279, 584, 712
Tru1I TTAA 6 cut(s) 185, 342, 363, 438, 468, 734
Tru9I TTAA 6 cut(s) 185, 342, 363, 438, 468, 734
TscAI CASTG 2 cut(s) 69, 709
TseFI GTSAC 1 cut(s) 772
TseI GCWGC 1 cut(s) 618
Tsp45I GTSAC 1 cut(s) 772
TspDTI ATGAA 4 cut(s) 250, 271, 437, 644
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 2 cut(s) 69, 709
XapI RAATTY 2 cut(s) 460, 782
XmnI GAANNNNTTC 2 cut(s) 56, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.