Rorug05G0247700

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000333
Physical Location & Seq
Reverse (-)
27146659 .. 27146940
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0247700.1

Sequence Viewer

Length: 282 bp
ATGGAGTTCAAGCCTGAGAGGTTTCTGAGTGATGAGGAGAACTTGTGTGATTTAACTGGTAGTAAGGAGATCAAGATGATGCCGTTTGGGGTAGGGAGAAGGATGTGTCCTGGTTCGAGTTTGGCAATGCTGCTTTTGGAGTACTTTGTGGCGAATTTGGTTTGGAAGTTCGAGTGGAGAGCTGTGGAGGGAGTTGGGGTTGATTTGAGTGAGAAGGAGGAGACGAGTTGGGGGATGAAGAATCCATTGCAGGCACATATCACTCCAAGGTTGAAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203
Pfam Domains
Protein Families
MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

93

Amino Acids

10.68

Weight (kDa)

5.41

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 79 1.5e-15 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 154
AfaI GTAC 1 cut(s) 143
AgsI TTSAA 2 cut(s) 10, 274
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw26I GTCTC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 130
ApoI RAATTY 1 cut(s) 154
BbvI GCAGC 1 cut(s) 117
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 215
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
BmcAI AGTACT 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 266
BsaXI ACNNNNNCTCC 4 cut(s) 29, 59, 183, 213
Bse1I ACTGG 1 cut(s) 61
Bse3DI GCAATG 2 cut(s) 132, 245
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 266
BseGI GGATG 2 cut(s) 108, 240
BseMI GCAATG 2 cut(s) 132, 245
BseMII CTCAG 2 cut(s) 6, 17
BseNI ACTGG 1 cut(s) 61
BseRI GAGGAG 2 cut(s) 50, 233
BseXI GCAGC 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 215
BsmBI CGTCTC 1 cut(s) 215
Bsp143I GATC 1 cut(s) 69
BspCNI CTCAG 2 cut(s) 7, 18
BsrDI GCAATG 2 cut(s) 132, 245
BsrI ACTGG 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 266
BssMI GATC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 266
Bst2UI CCWGG 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 2 cut(s) 15, 26
BstF5I GGATG 2 cut(s) 108, 240
BstKTI GATC 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 69
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstV1I GCAGC 1 cut(s) 117
BtsCI GGATG 2 cut(s) 108, 240
Cac8I GCNNGC 1 cut(s) 252
Csp6I GTAC 1 cut(s) 142
CviAII CATG 1 cut(s) 279
CviJI RGCY 2 cut(s) 13, 182
CviKI_1 RGCY 2 cut(s) 13, 182
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 2 cut(s) 15, 26
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 266
Esp3I CGTCTC 1 cut(s) 215
FaeI CATG 1 cut(s) 282
FaiI YATR 2 cut(s) 258, 280
FatI CATG 1 cut(s) 278
Fnu4HI GCNGC 1 cut(s) 131
FokI GGATG 2 cut(s) 115, 247
Fsp4HI GCNGC 1 cut(s) 131
GluI GCNGC 1 cut(s) 131
Hin1II CATG 1 cut(s) 282
HinfI GANTC 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 93, 208
HpyCH4V TGCA 1 cut(s) 250
HpyF3I CTNAG 2 cut(s) 15, 26
Hsp92II CATG 1 cut(s) 282
Kzo9I GATC 1 cut(s) 69
LpnPI CCDG 5 cut(s) 27, 42, 96, 123, 236
Lsp1109I GCAGC 1 cut(s) 117
LweI GCATC 1 cut(s) 69
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 1 cut(s) 250
MluCI AATT 1 cut(s) 154
MnlI CCTC 4 cut(s) 12, 28, 181, 211
MseI TTAA 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
NdeII GATC 1 cut(s) 69
NlaIII CATG 1 cut(s) 282
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 1 cut(s) 131
Sau3AI GATC 1 cut(s) 69
ScaI AGTACT 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 111
SetI ASST 3 cut(s) 23, 184, 272
SfaNI GCATC 1 cut(s) 69
Sse9I AATT 1 cut(s) 154
StyD4I CCNGG 1 cut(s) 109
StyI CCWWGG 1 cut(s) 266
TaqI TCGA 2 cut(s) 116, 171
TasI AATT 1 cut(s) 154
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TseI GCWGC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 251
XapI RAATTY 1 cut(s) 154
ZrmI AGTACT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.