Ubiquitin carboxyl-terminal hydrolase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MATH_2 | PF22486 | 54 - 169 | 7.2e-27 | MATH domain |
| MATH | PF00917 | 75 - 171 | 1.3e-10 | MATH domain |
| UCH | PF00443 | 189 - 510 | 2.7e-60 | Ubiquitin carboxyl-terminal hydrolase |
| UCH_1 | PF13423 | 189 - 464 | 3.8e-15 | Ubiquitin carboxyl-terminal hydrolase |
| USP7_ICP0_bdg | PF12436 | 606 - 777 | 4.9e-49 | ICP0-binding domain of Ubiquitin-specific protease 7 |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 2279 |
| AciI | CCGC | 3 cut(s) | 223, 1171, 1997 |
| AclWI | GGATC | 5 cut(s) | 36, 140, 153, 449, 1986 |
| AcoI | YGGCCR | 1 cut(s) | 1330 |
| AcsI | RAATTY | 5 cut(s) | 161, 601, 1205, 1379, 1493 |
| AcuI | CTGAAG | 4 cut(s) | 313, 622, 669, 1124 |
| AfaI | GTAC | 7 cut(s) | 121, 365, 623, 635, 883, 1376, 1436 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 464, 780, 1231 |
| AflIII | ACRYGT | 1 cut(s) | 1393 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 262 |
| AjnI | CCWGG | 1 cut(s) | 1468 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 56, 88, 1457, 1489, 1953, 1985 |
| Alw26I | GTCTC | 1 cut(s) | 1834 |
| AlwI | GGATC | 5 cut(s) | 36, 140, 153, 449, 1986 |
| AoxI | GGCC | 4 cut(s) | 645, 1330, 1833, 1973 |
| ApeKI | GCWGC | 1 cut(s) | 34 |
| ApoI | RAATTY | 5 cut(s) | 161, 601, 1205, 1379, 1493 |
| AspLEI | GCGC | 1 cut(s) | 706 |
| AspS9I | GGNCC | 4 cut(s) | 83, 1717, 1833, 1973 |
| AsuC2I | CCSGG | 1 cut(s) | 292 |
| AsuHPI | GGTGA | 5 cut(s) | 455, 487, 1064, 1245, 1454 |
| AvaII | GGWCC | 2 cut(s) | 83, 1717 |
| AxyI | CCTNAGG | 1 cut(s) | 1881 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 474, 507 |
| BalI | TGGCCA | 1 cut(s) | 1332 |
| BamHI | GGATCC | 1 cut(s) | 145 |
| BanII | GRGCYC | 1 cut(s) | 573 |
| BbsI | GAAGAC | 1 cut(s) | 2228 |
| BbvCI | CCTCAGC | 2 cut(s) | 87, 501 |
| BbvI | GCAGC | 1 cut(s) | 46 |
| BccI | CCATC | 2 cut(s) | 774, 2246 |
| BceAI | ACGGC | 1 cut(s) | 632 |
| BciT130I | CCWGG | 1 cut(s) | 1470 |
| BciVI | GTATCC | 2 cut(s) | 219, 778 |
| BcnI | CCSGG | 1 cut(s) | 292 |
| BcoDI | GTCTC | 1 cut(s) | 1834 |
| BfaI | CTAG | 5 cut(s) | 117, 189, 524, 1712, 2097 |
| BfmI | CTRYAG | 2 cut(s) | 339, 977 |
| BfoI | RGCGCY | 1 cut(s) | 707 |
| BfuI | GTATCC | 2 cut(s) | 219, 778 |
| BisI | GCNGC | 1 cut(s) | 35 |
| BlsI | GCNGC | 1 cut(s) | 36 |
| BmcAI | AGTACT | 1 cut(s) | 365 |
| Bme1390I | CCNGG | 2 cut(s) | 292, 1470 |
| Bme18I | GGWCC | 2 cut(s) | 83, 1717 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 262 |
| BmgT120I | GGNCC | 4 cut(s) | 83, 1717, 1833, 1973 |
| BmiI | GGNNCC | 2 cut(s) | 111, 147 |
| BmrFI | CCNGG | 2 cut(s) | 292, 1470 |
| BmrI | ACTGGG | 1 cut(s) | 424 |
| BmsI | GCATC | 4 cut(s) | 42, 702, 939, 1081 |
| BmuI | ACTGGG | 1 cut(s) | 424 |
| BpiI | GAAGAC | 1 cut(s) | 2228 |
| BpmI | CTGGAG | 1 cut(s) | 596 |
| Bpu10I | CCTNAGC | 2 cut(s) | 87, 501 |
| BpuEI | CTTGAG | 3 cut(s) | 557, 1067, 1930 |
| BpuMI | CCSGG | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 2 cut(s) | 240, 2010 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 464, 780, 1231 |
| Bse1I | ACTGG | 7 cut(s) | 137, 419, 536, 562, 1369, 1805, 2139 |
| Bse21I | CCTNAGG | 1 cut(s) | 1881 |
| Bse3DI | GCAATG | 1 cut(s) | 296 |
| BseBI | CCWGG | 1 cut(s) | 1470 |
| BseDI | CCNNGG | 2 cut(s) | 240, 2010 |
| BseGI | GGATG | 7 cut(s) | 283, 693, 785, 1009, 1096, 1414, 1576 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 464, 780, 1231 |
| BseMI | GCAATG | 1 cut(s) | 296 |
| BseMII | CTCAG | 7 cut(s) | 101, 398, 492, 660, 1377, 1895, 2040 |
| BseNI | ACTGG | 7 cut(s) | 137, 419, 536, 562, 1369, 1805, 2139 |
| BseRI | GAGGAG | 2 cut(s) | 1793, 2274 |
| BseXI | GCAGC | 1 cut(s) | 46 |
| BsgI | GTGCAG | 2 cut(s) | 836, 1829 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2237 |
| BshFI | GGCC | 4 cut(s) | 647, 1332, 1835, 1975 |
| BsiEI | CGRYCG | 1 cut(s) | 2237 |
| BsiSI | CCGG | 2 cut(s) | 291, 1976 |
| BslFI | GGGAC | 3 cut(s) | 307, 1187, 1550 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 464, 780, 1231 |
| BsmAI | GTCTC | 1 cut(s) | 1834 |
| BsmFI | GGGAC | 3 cut(s) | 307, 1187, 1550 |
| BsmI | GAATGC | 1 cut(s) | 932 |
| BsnI | GGCC | 4 cut(s) | 647, 1332, 1835, 1975 |
| Bsp1286I | GDGCHC | 1 cut(s) | 573 |
| Bsp143I | GATC | 7 cut(s) | 28, 145, 445, 454, 1195, 1978, 2234 |
| BspACI | CCGC | 3 cut(s) | 223, 1171, 1997 |
| BspANI | GGCC | 4 cut(s) | 647, 1332, 1835, 1975 |
| BspCNI | CTCAG | 7 cut(s) | 100, 397, 493, 661, 1376, 1894, 2041 |
| BspLI | GGNNCC | 2 cut(s) | 111, 147 |
| BspPI | GGATC | 5 cut(s) | 36, 140, 153, 449, 1986 |
| BspQI | GCTCTTC | 1 cut(s) | 1422 |
| BsrDI | GCAATG | 1 cut(s) | 296 |
| BsrI | ACTGG | 7 cut(s) | 137, 419, 536, 562, 1369, 1805, 2139 |
| BssECI | CCNNGG | 2 cut(s) | 240, 2010 |
| BssMI | GATC | 7 cut(s) | 28, 145, 445, 454, 1195, 1978, 2234 |
| BssT1I | CCWWGG | 2 cut(s) | 240, 2010 |
| Bst2UI | CCWGG | 1 cut(s) | 1470 |
| Bst4CI | ACNGT | 7 cut(s) | 24, 124, 487, 633, 871, 1439, 1541 |
| Bst6I | CTCTTC | 9 cut(s) | 42, 612, 1218, 1296, 1409, 1422, 1443, 1617, 2084 |
| BstC8I | GCNNGC | 1 cut(s) | 114 |
| BstDEI | CTNAG | 9 cut(s) | 87, 384, 501, 669, 1095, 1363, 1595, 1881, 2049 |
| BstF5I | GGATG | 7 cut(s) | 283, 693, 785, 1009, 1096, 1414, 1576 |
| BstH2I | RGCGCY | 1 cut(s) | 707 |
| BstHHI | GCGC | 1 cut(s) | 706 |
| BstKTI | GATC | 7 cut(s) | 31, 148, 448, 457, 1198, 1981, 2237 |
| BstMAI | GTCTC | 1 cut(s) | 1834 |
| BstMBI | GATC | 7 cut(s) | 28, 145, 445, 454, 1195, 1978, 2234 |
| BstMCI | CGRYCG | 1 cut(s) | 2237 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 506, 1816, 2044 |
| BstNI | CCWGG | 1 cut(s) | 1470 |
| BstNSI | RCATGY | 3 cut(s) | 223, 682, 1522 |
| BstSCI | CCNGG | 2 cut(s) | 290, 1468 |
| BstSFI | CTRYAG | 2 cut(s) | 339, 977 |
| BstV1I | GCAGC | 1 cut(s) | 46 |
| BstV2I | GAAGAC | 1 cut(s) | 2228 |
| BstX2I | RGATCY | 2 cut(s) | 145, 1978 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 309 |
| BstYI | RGATCY | 2 cut(s) | 145, 1978 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1881 |
| BsuI | GTATCC | 2 cut(s) | 219, 778 |
| BsuRI | GGCC | 4 cut(s) | 647, 1332, 1835, 1975 |
| BtsCI | GGATG | 7 cut(s) | 283, 693, 785, 1009, 1096, 1414, 1576 |
| BtsI | GCAGTG | 1 cut(s) | 751 |
| BtsIMutI | CAGTG | 5 cut(s) | 144, 751, 1376, 1546, 1812 |
| Cac8I | GCNNGC | 1 cut(s) | 114 |
| CfoI | GCGC | 1 cut(s) | 706 |
| Cfr13I | GGNCC | 4 cut(s) | 83, 1717, 1833, 1973 |
| Csp6I | GTAC | 7 cut(s) | 120, 364, 622, 634, 882, 1375, 1435 |
| CviQI | GTAC | 7 cut(s) | 120, 364, 622, 634, 882, 1375, 1435 |
| DdeI | CTNAG | 9 cut(s) | 87, 384, 501, 669, 1095, 1363, 1595, 1881, 2049 |
| DpnI | GATC | 7 cut(s) | 30, 147, 447, 456, 1197, 1980, 2236 |
| DpnII | GATC | 7 cut(s) | 28, 145, 445, 454, 1195, 1978, 2234 |
| DriI | GACNNNNNGTC | 1 cut(s) | 262 |
| EaeI | YGGCCR | 1 cut(s) | 1330 |
| Eam1104I | CTCTTC | 9 cut(s) | 42, 612, 1218, 1296, 1409, 1422, 1443, 1617, 2084 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 262 |
| EarI | CTCTTC | 9 cut(s) | 42, 612, 1218, 1296, 1409, 1422, 1443, 1617, 2084 |
| EciI | GGCGGA | 1 cut(s) | 1986 |
| Eco130I | CCWWGG | 2 cut(s) | 240, 2010 |
| Eco24I | GRGCYC | 1 cut(s) | 573 |
| Eco32I | GATATC | 2 cut(s) | 470, 2020 |
| Eco47I | GGWCC | 2 cut(s) | 83, 1717 |
| Eco57I | CTGAAG | 4 cut(s) | 313, 622, 669, 1124 |
| Eco81I | CCTNAGG | 1 cut(s) | 1881 |
| EcoO109I | RGGNCCY | 1 cut(s) | 83 |
| EcoRI | GAATTC | 1 cut(s) | 601 |
| EcoRII | CCWGG | 1 cut(s) | 1468 |
| EcoRV | GATATC | 2 cut(s) | 470, 2020 |
| EcoT14I | CCWWGG | 2 cut(s) | 240, 2010 |
| EcoT22I | ATGCAT | 2 cut(s) | 932, 1516 |
| EcoT38I | GRGCYC | 1 cut(s) | 573 |
| ErhI | CCWWGG | 2 cut(s) | 240, 2010 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 39, 71, 682, 714, 2007, 2039 |
| FaqI | GGGAC | 3 cut(s) | 307, 1187, 1550 |
| FauI | CCCGC | 1 cut(s) | 1164 |
| FauNDI | CATATG | 4 cut(s) | 304, 538, 657, 790 |
| FblI | GTMKAC | 1 cut(s) | 2279 |
| Fnu4HI | GCNGC | 1 cut(s) | 35 |
| FokI | GGATG | 7 cut(s) | 290, 680, 792, 1016, 1103, 1421, 1583 |
| FriOI | GRGCYC | 1 cut(s) | 573 |
| Fsp4HI | GCNGC | 1 cut(s) | 35 |
| FspBI | CTAG | 5 cut(s) | 117, 189, 524, 1712, 2097 |
| GlaI | GCGC | 1 cut(s) | 705 |
| GluI | GCNGC | 1 cut(s) | 35 |
| GsuI | CTGGAG | 1 cut(s) | 596 |
| HaeII | RGCGCY | 1 cut(s) | 707 |
| HaeIII | GGCC | 4 cut(s) | 647, 1332, 1835, 1975 |
| HapII | CCGG | 2 cut(s) | 291, 1976 |
| HhaI | GCGC | 1 cut(s) | 706 |
| Hin6I | GCGC | 1 cut(s) | 704 |
| HinP1I | GCGC | 1 cut(s) | 704 |
| HincII | GTYRAC | 1 cut(s) | 134 |
| HindII | GTYRAC | 1 cut(s) | 134 |
| HindIII | AAGCTT | 3 cut(s) | 725, 845, 2036 |
| HinfI | GANTC | 9 cut(s) | 13, 287, 420, 542, 577, 794, 962, 1259, 2239 |
| HpaII | CCGG | 2 cut(s) | 291, 1976 |
| HphI | GGTGA | 5 cut(s) | 455, 487, 1064, 1245, 1454 |
| Hpy166II | GTNNAC | 6 cut(s) | 134, 256, 478, 1717, 2102, 2280 |
| Hpy8I | GTNNAC | 6 cut(s) | 134, 256, 478, 1717, 2102, 2280 |
| HpyAV | CCTTC | 8 cut(s) | 74, 693, 856, 896, 1093, 1686, 2033, 2334 |
| HpyCH4III | ACNGT | 7 cut(s) | 24, 124, 487, 633, 871, 1439, 1541 |
| HpyCH4IV | ACGT | 5 cut(s) | 1042, 1393, 1566, 1984, 2065 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 506, 1816, 2044 |
| HpyF3I | CTNAG | 9 cut(s) | 87, 384, 501, 669, 1095, 1363, 1595, 1881, 2049 |
| HpySE526I | ACGT | 5 cut(s) | 1042, 1393, 1566, 1984, 2065 |
| HspAI | GCGC | 1 cut(s) | 704 |
| Kzo9I | GATC | 7 cut(s) | 28, 145, 445, 454, 1195, 1978, 2234 |
| LguI | GCTCTTC | 1 cut(s) | 1422 |
| LmnI | GCTCC | 2 cut(s) | 109, 584 |
| Lsp1109I | GCAGC | 1 cut(s) | 46 |
| LweI | GCATC | 4 cut(s) | 42, 702, 939, 1081 |
| MaeI | CTAG | 5 cut(s) | 117, 189, 524, 1712, 2097 |
| MaeII | ACGT | 5 cut(s) | 1042, 1393, 1566, 1984, 2065 |
| MaeIII | GTNAC | 4 cut(s) | 410, 1052, 1396, 1562 |
| MalI | GATC | 7 cut(s) | 30, 147, 447, 456, 1197, 1980, 2236 |
| MboI | GATC | 7 cut(s) | 28, 145, 445, 454, 1195, 1978, 2234 |
| MfeI | CAATTG | 1 cut(s) | 174 |
| MflI | RGATCY | 2 cut(s) | 145, 1978 |
| MhlI | GDGCHC | 1 cut(s) | 573 |
| MlsI | TGGCCA | 1 cut(s) | 1332 |
| MluNI | TGGCCA | 1 cut(s) | 1332 |
| MlyI | GAGTC | 3 cut(s) | 7, 536, 2248 |
| MmeI | TCCRAC | 3 cut(s) | 6, 176, 1882 |
| Mox20I | TGGCCA | 1 cut(s) | 1332 |
| Mph1103I | ATGCAT | 2 cut(s) | 932, 1516 |
| MscI | TGGCCA | 1 cut(s) | 1332 |
| MseI | TTAA | 7 cut(s) | 345, 825, 1185, 1677, 1764, 2034, 2126 |
| MslI | CAYNNNNRTG | 6 cut(s) | 307, 935, 1314, 1338, 1523, 1805 |
| Msp20I | TGGCCA | 1 cut(s) | 1332 |
| MspI | CCGG | 2 cut(s) | 291, 1976 |
| MspR9I | CCNGG | 2 cut(s) | 292, 1470 |
| MunI | CAATTG | 1 cut(s) | 174 |
| Mva1269I | GAATGC | 1 cut(s) | 932 |
| MvaI | CCWGG | 1 cut(s) | 1470 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 506, 1816, 2044 |
| NciI | CCSGG | 1 cut(s) | 292 |
| NdeI | CATATG | 4 cut(s) | 304, 538, 657, 790 |
| NdeII | GATC | 7 cut(s) | 28, 145, 445, 454, 1195, 1978, 2234 |
| NlaIV | GGNNCC | 2 cut(s) | 111, 147 |
| NmuCI | GTSAC | 3 cut(s) | 410, 1052, 1396 |
| NsiI | ATGCAT | 2 cut(s) | 932, 1516 |
| NspI | RCATGY | 3 cut(s) | 223, 682, 1522 |
| PciSI | GCTCTTC | 1 cut(s) | 1422 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1738, 1864, 2062 |
| PctI | GAATGC | 1 cut(s) | 932 |
| PfeI | GAWTC | 6 cut(s) | 287, 420, 577, 794, 962, 1259 |
| PfoI | TCCNGGA | 1 cut(s) | 290 |
| PkrI | GCNGC | 1 cut(s) | 36 |
| Ple19I | CGATCG | 1 cut(s) | 2237 |
| PleI | GAGTC | 3 cut(s) | 7, 536, 2247 |
| PpsI | GAGTC | 3 cut(s) | 7, 536, 2247 |
| PpuMI | RGGWCCY | 1 cut(s) | 83 |
| Psp5II | RGGWCCY | 1 cut(s) | 83 |
| Psp6I | CCWGG | 1 cut(s) | 1468 |
| PspGI | CCWGG | 1 cut(s) | 1468 |
| PspN4I | GGNNCC | 2 cut(s) | 111, 147 |
| PspPI | GGNCC | 4 cut(s) | 83, 1717, 1833, 1973 |
| PspPPI | RGGWCCY | 1 cut(s) | 83 |
| PsuI | RGATCY | 2 cut(s) | 145, 1978 |
| PvuI | CGATCG | 1 cut(s) | 2237 |
| RsaI | GTAC | 7 cut(s) | 121, 365, 623, 635, 883, 1376, 1436 |
| RsaNI | GTAC | 7 cut(s) | 120, 364, 622, 634, 882, 1375, 1435 |
| RseI | CAYNNNNRTG | 6 cut(s) | 307, 935, 1314, 1338, 1523, 1805 |
| SapI | GCTCTTC | 1 cut(s) | 1422 |
| SaqAI | TTAA | 7 cut(s) | 345, 825, 1185, 1677, 1764, 2034, 2126 |
| SatI | GCNGC | 1 cut(s) | 35 |
| Sau3AI | GATC | 7 cut(s) | 28, 145, 445, 454, 1195, 1978, 2234 |
| Sau96I | GGNCC | 4 cut(s) | 83, 1717, 1833, 1973 |
| ScaI | AGTACT | 1 cut(s) | 365 |
| SchI | GAGTC | 3 cut(s) | 7, 536, 2248 |
| ScrFI | CCNGG | 2 cut(s) | 292, 1470 |
| SduI | GDGCHC | 1 cut(s) | 573 |
| SfaNI | GCATC | 4 cut(s) | 42, 702, 939, 1081 |
| SfcI | CTRYAG | 2 cut(s) | 339, 977 |
| SinI | GGWCC | 2 cut(s) | 83, 1717 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 307, 935, 1314, 1338, 1523, 1805 |
| SmlI | CTYRAG | 3 cut(s) | 572, 1046, 1909 |
| SmoI | CTYRAG | 3 cut(s) | 572, 1046, 1909 |
| SsiI | CCGC | 3 cut(s) | 223, 1171, 1997 |
| SspI | AATATT | 1 cut(s) | 234 |
| SspMI | CTAG | 5 cut(s) | 117, 189, 524, 1712, 2097 |
| StyD4I | CCNGG | 2 cut(s) | 290, 1468 |
| StyI | CCWWGG | 2 cut(s) | 240, 2010 |
| TaaI | ACNGT | 7 cut(s) | 24, 124, 487, 633, 871, 1439, 1541 |
| TaiI | ACGT | 5 cut(s) | 1045, 1396, 1569, 1987, 2068 |
| TaqI | TCGA | 4 cut(s) | 78, 545, 2233, 2237 |
| TatI | WGTACW | 2 cut(s) | 119, 363 |
| TfiI | GAWTC | 6 cut(s) | 287, 420, 577, 794, 962, 1259 |
| Tru1I | TTAA | 7 cut(s) | 345, 825, 1185, 1677, 1764, 2034, 2126 |
| Tru9I | TTAA | 7 cut(s) | 345, 825, 1185, 1677, 1764, 2034, 2126 |
| TscAI | CASTG | 5 cut(s) | 144, 751, 1376, 1546, 1812 |
| TseFI | GTSAC | 3 cut(s) | 410, 1052, 1396 |
| TseI | GCWGC | 1 cut(s) | 34 |
| Tsp45I | GTSAC | 3 cut(s) | 410, 1052, 1396 |
| TspGWI | ACGGA | 2 cut(s) | 503, 1730 |
| TspRI | CASTG | 5 cut(s) | 144, 751, 1376, 1546, 1812 |
| VpaK11BI | GGWCC | 2 cut(s) | 83, 1717 |
| XapI | RAATTY | 5 cut(s) | 161, 601, 1205, 1379, 1493 |
| XbaI | TCTAGA | 1 cut(s) | 523 |
| XceI | RCATGY | 3 cut(s) | 223, 682, 1522 |
| XmiI | GTMKAC | 1 cut(s) | 2279 |
| XspI | CTAG | 5 cut(s) | 117, 189, 524, 1712, 2097 |
| ZrmI | AGTACT | 1 cut(s) | 365 |
| Zsp2I | ATGCAT | 2 cut(s) | 932, 1516 |