RLG00000036139

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000333
Physical Location & Seq
Forward (+)
76293286 .. 76313512
20227 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036139

Sequence Viewer

Length: 1068 bp
ATGCAAGAAGCCAAGAAGACGAACCTCATTTTCTTCTCTAAGACTGAGAATGCCGGCGAAGGTGAGCGATTGTTATGGTGTCTCCTCATATTACTCACATATTTAACAACCAATGCAGAACTTCAATTTAGTCTAGTGGCACAAGAGGAGGTCGCTAAAGAGTTTGGCATACCAGTACAATATCAGCGCTACTGGCGGTGGATGAAGCGTCAAAACAATACATATCGTCCACGCTATCCATTGACGCTTATGGAGGAAACAGTATCTGTTAAAGAGTTGACTGGTAATCGTTCAGAAGTAAACTTGTTCTTAGAAGTAGAGCTTGGGCTGGATTTACACCCTATCGCTCCACCTGACATAACAAGAGATGTCATTCTTCTCTTCTTTAAGCTTTATGATCCAGAAACAGAAGAGCTATGTTATGTTGGAAGGCTATTTGTCAACCTCGGTGGTAAACCTACTGAAATCTTATCGAAATTAAATAAGTTTGCTGGCTATGCCCTGGATCAAGAGATCGACCTTTATGAGGAAATTAAGTTTCAACCCGCTGTCATGTGTGAGCTCATTGACAAGAATCTTACATTTCGAGCCAGCCAGCTTGAGGACGGAGACATTGTCTGCTTTCAGAAACCAACTCCAGTAGAAATTGGTGTATGTTTCCGGTATCCAAATGTCCAGTCTTTTCTGGACTCTCTGCTCATACCTCATTCCTCAAGTTCTGAGGCAAACACCTCAGTTGCAGTCAATGTAAGAGGAAGAGGAAGAGGAAGATCTAGTTGGGGATTTTCTAGGGGAAGAGGAAGGGGCAGAGGAAGGAGCATTGGGAAGCAAGGGGCAGAGGCTCTACTAGAGGTAACTAGAGGAAGTGATGCAGTGAAACCACAAAGACCATTGGAGGGTACAACAAGCACGCAGACTAGTCGAGCTAATCATTCTTCTGCTCATGAAGTGAGGTCACAAAATACAGCTCAGAGGGCAAAGACCTTGGAAATAGGAAGACTTATTTCAAGGGTTAGCATGGTGGTGCAGAGTCTAACCAAGTTTTTAGTGGTTCTAATGGTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203
Pfam Domains
Protein Families
MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

356

Amino Acids

40.15

Weight (kDa)

8.5

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
USP7_ICP0_bdg PF12436 62 - 233 2.8e-41 ICP0-binding domain of Ubiquitin-specific protease 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 196, 546
AclWI GGATC 2 cut(s) 392, 513
AfaI GTAC 2 cut(s) 177, 901
AfeI AGCGCT 1 cut(s) 188
AfiI CCNNNNNNNGG 3 cut(s) 526, 601, 896
AgsI TTSAA 3 cut(s) 125, 542, 1008
AhlI ACTAGT 1 cut(s) 917
AjnI CCWGG 1 cut(s) 501
AjuI GAANNNNNNNTTGG 4 cut(s) 306, 338, 760, 792
AluBI AGCT 7 cut(s) 322, 391, 415, 562, 598, 926, 968
AluI AGCT 7 cut(s) 322, 391, 415, 562, 598, 926, 968
Alw21I GWGCWC 1 cut(s) 564
Alw26I GTCTC 2 cut(s) 86, 603
AlwI GGATC 2 cut(s) 392, 513
AlwNI CAGNNNCTG 1 cut(s) 266
Aor51HI AGCGCT 1 cut(s) 188
ArsI GACNNNNNNTTYG 2 cut(s) 662, 694
AspLEI GCGC 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 74
BanII GRGCYC 1 cut(s) 564
BbsI GAAGAC 2 cut(s) 23, 1003
Bbv12I GWGCWC 1 cut(s) 564
BcgI CGANNNNNNTGC 2 cut(s) 902, 936
BciT130I CCWGG 1 cut(s) 503
BciVI GTATCC 1 cut(s) 675
BcoDI GTCTC 2 cut(s) 86, 603
BcuI ACTAGT 1 cut(s) 917
BfaI CTAG 6 cut(s) 134, 774, 789, 848, 858, 918
BfoI RGCGCY 1 cut(s) 190
BfuI GTATCC 1 cut(s) 675
BglII AGATCT 1 cut(s) 770
Bme1390I CCNGG 1 cut(s) 503
BmrFI CCNGG 1 cut(s) 503
BmsI GCATC 1 cut(s) 859
BpiI GAAGAC 2 cut(s) 23, 1003
BpmI CTGGAG 1 cut(s) 621
BpuEI CTTGAG 2 cut(s) 620, 697
BsaJI CCNNGG 3 cut(s) 445, 501, 984
BsaWI WCCGGW 1 cut(s) 660
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 3 cut(s) 526, 601, 896
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 5 cut(s) 173, 197, 286, 638, 676
BseBI CCWGG 1 cut(s) 503
BseDI CCNNGG 3 cut(s) 445, 501, 984
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 3 cut(s) 526, 601, 896
BseMII CTCAG 4 cut(s) 36, 711, 747, 983
BseNI ACTGG 5 cut(s) 173, 197, 286, 638, 676
BseRI GAGGAG 2 cut(s) 74, 161
BsgI GTGCAG 1 cut(s) 1046
BsiHKAI GWGCWC 1 cut(s) 564
BsiSI CCGG 2 cut(s) 54, 661
BslI CCNNNNNNNGG 3 cut(s) 526, 601, 896
BsmAI GTCTC 2 cut(s) 86, 603
BsmI GAATGC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 564
Bsp143I GATC 4 cut(s) 397, 505, 513, 770
BspACI CCGC 2 cut(s) 196, 546
BspCNI CTCAG 4 cut(s) 37, 712, 746, 982
BspHI TCATGA 1 cut(s) 943
BspPI GGATC 2 cut(s) 392, 513
BspQI GCTCTTC 1 cut(s) 405
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 5 cut(s) 173, 197, 286, 638, 676
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 3 cut(s) 445, 501, 984
BssMI GATC 4 cut(s) 397, 505, 513, 770
BssT1I CCWWGG 1 cut(s) 984
Bst2UI CCWGG 1 cut(s) 503
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 5 cut(s) 386, 405, 751, 757, 790
BstC8I GCNNGC 5 cut(s) 55, 493, 592, 596, 911
BstDEI CTNAG 6 cut(s) 39, 45, 310, 720, 733, 969
BstENI CCTNNNNNAGG 1 cut(s) 524
BstF5I GGATG 1 cut(s) 207
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 4 cut(s) 400, 508, 516, 773
BstMAI GTCTC 2 cut(s) 86, 603
BstMBI GATC 4 cut(s) 397, 505, 513, 770
BstMWI GCNNNNNNNGC 3 cut(s) 193, 497, 974
BstNI CCWGG 1 cut(s) 503
BstSCI CCNGG 1 cut(s) 501
BstV2I GAAGAC 2 cut(s) 23, 1003
BstX2I RGATCY 1 cut(s) 770
BstYI RGATCY 1 cut(s) 770
BsuI GTATCC 1 cut(s) 675
BtsCI GGATG 1 cut(s) 207
BtsI GCAGTG 1 cut(s) 879
BtsIMutI CAGTG 1 cut(s) 879
Cac8I GCNNGC 5 cut(s) 55, 493, 592, 596, 911
CaiI CAGNNNCTG 1 cut(s) 266
CciI TCATGA 1 cut(s) 943
CfoI GCGC 1 cut(s) 189
Cfr10I RCCGGY 1 cut(s) 53
CseI GACGC 2 cut(s) 197, 253
Csp6I GTAC 2 cut(s) 176, 900
CspCI CAANNNNNGTGG 2 cut(s) 430, 465
CviAII CATG 3 cut(s) 553, 944, 1018
CviQI GTAC 2 cut(s) 176, 900
DdeI CTNAG 6 cut(s) 39, 45, 310, 720, 733, 969
DpnI GATC 4 cut(s) 399, 507, 515, 772
DpnII GATC 4 cut(s) 397, 505, 513, 770
Eam1104I CTCTTC 5 cut(s) 386, 405, 751, 757, 790
EarI CTCTTC 5 cut(s) 386, 405, 751, 757, 790
Ecl136II GAGCTC 1 cut(s) 562
Eco130I CCWWGG 1 cut(s) 984
Eco24I GRGCYC 1 cut(s) 564
Eco47III AGCGCT 1 cut(s) 188
Eco53kI GAGCTC 1 cut(s) 562
EcoICRI GAGCTC 1 cut(s) 562
EcoNI CCTNNNNNAGG 1 cut(s) 524
EcoRII CCWGG 1 cut(s) 501
EcoT14I CCWWGG 1 cut(s) 984
EcoT38I GRGCYC 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 984
FaeI CATG 3 cut(s) 556, 947, 1021
FalI AAGNNNNNCTT 2 cut(s) 306, 338
FatI CATG 3 cut(s) 552, 943, 1017
FauI CCCGC 1 cut(s) 553
FokI GGATG 1 cut(s) 214
FriOI GRGCYC 1 cut(s) 564
FspBI CTAG 6 cut(s) 134, 774, 789, 848, 858, 918
GlaI GCGC 1 cut(s) 188
GsuI CTGGAG 1 cut(s) 621
HaeII RGCGCY 1 cut(s) 190
HapII CCGG 2 cut(s) 54, 661
HgaI GACGC 2 cut(s) 197, 253
HhaI GCGC 1 cut(s) 189
Hin1II CATG 3 cut(s) 556, 947, 1021
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HincII GTYRAC 2 cut(s) 279, 442
HindII GTYRAC 2 cut(s) 279, 442
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 3 cut(s) 574, 689, 1030
HpaII CCGG 2 cut(s) 54, 661
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 5 cut(s) 230, 279, 301, 442, 455
Hpy188I TCNGA 4 cut(s) 295, 627, 721, 972
Hpy188III TCNNGA 4 cut(s) 401, 509, 686, 944
Hpy8I GTNNAC 5 cut(s) 230, 279, 301, 442, 455
HpyAV CCTTC 4 cut(s) 53, 423, 795, 807
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4V TGCA 5 cut(s) 4, 116, 740, 872, 1027
HpyF10VI GCNNNNNNNGC 3 cut(s) 193, 497, 974
HpyF3I CTNAG 6 cut(s) 39, 45, 310, 720, 733, 969
Hsp92II CATG 3 cut(s) 556, 947, 1021
HspAI GCGC 1 cut(s) 187
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Kzo9I GATC 4 cut(s) 397, 505, 513, 770
LguI GCTCTTC 1 cut(s) 405
LmnI GCTCC 2 cut(s) 352, 816
LweI GCATC 1 cut(s) 859
MaeI CTAG 6 cut(s) 134, 774, 789, 848, 858, 918
MaeIII GTNAC 2 cut(s) 853, 954
MalI GATC 4 cut(s) 399, 507, 515, 772
MboI GATC 4 cut(s) 397, 505, 513, 770
MflI RGATCY 1 cut(s) 770
MhlI GDGCHC 1 cut(s) 564
MluCI AATT 5 cut(s) 125, 476, 531, 645, 1063
MlyI GAGTC 2 cut(s) 683, 1039
MmeI TCCRAC 1 cut(s) 406
MroNI GCCGGC 1 cut(s) 53
MseI TTAA 6 cut(s) 104, 270, 387, 479, 534, 1062
MslI CAYNNNNRTG 1 cut(s) 1022
MspA1I CMGCKG 1 cut(s) 548
MspI CCGG 2 cut(s) 54, 661
MspR9I CCNGG 1 cut(s) 503
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 1 cut(s) 503
MwoI GCNNNNNNNGC 3 cut(s) 193, 497, 974
NaeI GCCGGC 1 cut(s) 55
NdeII GATC 4 cut(s) 397, 505, 513, 770
NgoMIV GCCGGC 1 cut(s) 53
NlaIII CATG 3 cut(s) 556, 947, 1021
NmuCI GTSAC 1 cut(s) 954
PagI TCATGA 1 cut(s) 943
PciSI GCTCTTC 1 cut(s) 405
PctI GAATGC 1 cut(s) 55
PdiI GCCGGC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 574
PflFI GACNNNGTC 1 cut(s) 614
PleI GAGTC 2 cut(s) 683, 1038
PpsI GAGTC 2 cut(s) 683, 1038
Psp124BI GAGCTC 1 cut(s) 564
Psp6I CCWGG 1 cut(s) 501
PspGI CCWGG 1 cut(s) 501
PstNI CAGNNNCTG 1 cut(s) 266
PsuI RGATCY 1 cut(s) 770
PsyI GACNNNGTC 1 cut(s) 614
RsaI GTAC 2 cut(s) 177, 901
RsaNI GTAC 2 cut(s) 176, 900
RseI CAYNNNNRTG 1 cut(s) 1022
SacI GAGCTC 1 cut(s) 564
SapI GCTCTTC 1 cut(s) 405
SaqAI TTAA 6 cut(s) 104, 270, 387, 479, 534, 1062
Sau3AI GATC 4 cut(s) 397, 505, 513, 770
SchI GAGTC 2 cut(s) 683, 1039
ScrFI CCNGG 1 cut(s) 503
SduI GDGCHC 1 cut(s) 564
SfaNI GCATC 1 cut(s) 859
SmiMI CAYNNNNRTG 1 cut(s) 1022
SmlI CTYRAG 2 cut(s) 599, 712
SmoI CTYRAG 2 cut(s) 599, 712
SpeI ACTAGT 1 cut(s) 917
Sse9I AATT 5 cut(s) 125, 476, 531, 645, 1063
SsiI CCGC 2 cut(s) 196, 546
SspMI CTAG 6 cut(s) 134, 774, 789, 848, 858, 918
SstI GAGCTC 1 cut(s) 564
StyD4I CCNGG 1 cut(s) 501
StyI CCWWGG 1 cut(s) 984
TaaI ACNGT 1 cut(s) 262
TaqI TCGA 4 cut(s) 473, 516, 586, 922
TasI AATT 5 cut(s) 125, 476, 531, 645, 1063
TatI WGTACW 1 cut(s) 175
TfiI GAWTC 1 cut(s) 574
Tru1I TTAA 6 cut(s) 104, 270, 387, 479, 534, 1062
Tru9I TTAA 6 cut(s) 104, 270, 387, 479, 534, 1062
TscAI CASTG 1 cut(s) 879
TseFI GTSAC 1 cut(s) 954
Tsp45I GTSAC 1 cut(s) 954
TspDTI ATGAA 2 cut(s) 218, 960
TspGWI ACGGA 1 cut(s) 621
TspRI CASTG 1 cut(s) 879
Tth111I GACNNNGTC 1 cut(s) 614
XagI CCTNNNNNAGG 1 cut(s) 524
XcmI CCANNNNNNNNNTGG 1 cut(s) 1045
XspI CTAG 6 cut(s) 134, 774, 789, 848, 858, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.