Ubiquitin carboxyl-terminal hydrolase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MATH_2 | PF22486 | 56 - 179 | 4.9e-39 | MATH domain |
| MATH | PF00917 | 61 - 180 | 1.9e-17 | MATH domain |
| UCH | PF00443 | 199 - 520 | 1.9e-59 | Ubiquitin carboxyl-terminal hydrolase |
| UCH_1 | PF13423 | 199 - 474 | 6.4e-16 | Ubiquitin carboxyl-terminal hydrolase |
| USP7_ICP0_bdg | PF12436 | 624 - 874 | 4.7e-78 | ICP0-binding domain of Ubiquitin-specific protease 7 |
| USP7_C2 | PF14533 | 884 - 1095 | 1.2e-55 | Ubiquitin-specific protease C-terminal |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 521 |
| AatII | GACGTC | 1 cut(s) | 2370 |
| Acc36I | ACCTGC | 1 cut(s) | 1737 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 94 |
| AccI | GTMKAC | 1 cut(s) | 2994 |
| AccII | CGCG | 3 cut(s) | 435, 1032, 1544 |
| AccIII | TCCGGA | 1 cut(s) | 2827 |
| AciI | CCGC | 5 cut(s) | 18, 314, 1873, 2356, 3128 |
| AclWI | GGATC | 4 cut(s) | 146, 294, 479, 1779 |
| AcsI | RAATTY | 6 cut(s) | 325, 1409, 1523, 2276, 3033, 3137 |
| AcuI | CTGAAG | 6 cut(s) | 992, 1308, 2021, 2625, 2958, 3173 |
| AcyI | GRCGYC | 1 cut(s) | 2367 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 94, 494, 1380, 1828, 2209, 2227, 2302, 2535 |
| AflII | CTTAAG | 1 cut(s) | 602 |
| AflIII | ACRYGT | 1 cut(s) | 1542 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2371 |
| AjnI | CCWGG | 2 cut(s) | 1498, 3060 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1994, 2007, 2026, 2039 |
| AleI | CACNNNNGTG | 2 cut(s) | 1211, 1344 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3042, 3074 |
| Alw21I | GWGCWC | 4 cut(s) | 1665, 2394, 2777, 3270 |
| Alw26I | GTCTC | 4 cut(s) | 128, 2304, 2826, 3074 |
| Alw44I | GTGCAC | 1 cut(s) | 2390 |
| AlwI | GGATC | 4 cut(s) | 146, 294, 479, 1779 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 649 |
| Ama87I | CYCGRG | 1 cut(s) | 1716 |
| Aor13HI | TCCGGA | 1 cut(s) | 2827 |
| AoxI | GGCC | 2 cut(s) | 675, 1382 |
| ApaLI | GTGCAC | 1 cut(s) | 2390 |
| ApeKI | GCWGC | 3 cut(s) | 835, 2761, 3299 |
| ApoI | RAATTY | 6 cut(s) | 325, 1409, 1523, 2276, 3033, 3137 |
| AseI | ATTAAT | 2 cut(s) | 963, 1221 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2006 |
| AspS9I | GGNCC | 2 cut(s) | 2944, 2969 |
| AsuC2I | CCSGG | 3 cut(s) | 1717, 1718, 3179 |
| AsuHPI | GGTGA | 9 cut(s) | 77, 485, 929, 1094, 1225, 1275, 1484, 2533, 3089 |
| AsuII | TTCGAA | 1 cut(s) | 3103 |
| AvaI | CYCGRG | 1 cut(s) | 1716 |
| AvaII | GGWCC | 2 cut(s) | 2944, 2969 |
| AxyI | CCTNAGG | 1 cut(s) | 36 |
| BaeGI | GKGCMC | 1 cut(s) | 2394 |
| BanII | GRGCYC | 1 cut(s) | 2247 |
| BbsI | GAAGAC | 1 cut(s) | 888 |
| Bbv12I | GWGCWC | 4 cut(s) | 1665, 2394, 2777, 3270 |
| BbvCI | CCTCAGC | 1 cut(s) | 2577 |
| BbvI | GCAGC | 3 cut(s) | 847, 2748, 3311 |
| BccI | CCATC | 5 cut(s) | 721, 804, 2273, 2300, 2533 |
| BceAI | ACGGC | 1 cut(s) | 662 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1022, 1056, 3147, 3181 |
| BciT130I | CCWGG | 2 cut(s) | 1500, 3062 |
| BciVI | GTATCC | 1 cut(s) | 808 |
| BclI | TGATCA | 2 cut(s) | 28, 1396 |
| BcnI | CCSGG | 3 cut(s) | 1717, 1718, 3179 |
| BcoDI | GTCTC | 4 cut(s) | 128, 2304, 2826, 3074 |
| BfaI | CTAG | 4 cut(s) | 195, 503, 3170, 3210 |
| BfmI | CTRYAG | 1 cut(s) | 641 |
| BfrI | CTTAAG | 1 cut(s) | 602 |
| BfuAI | ACCTGC | 1 cut(s) | 1737 |
| BfuI | GTATCC | 1 cut(s) | 808 |
| BglII | AGATCT | 1 cut(s) | 3290 |
| BisI | GCNGC | 3 cut(s) | 836, 2762, 3300 |
| BlsI | GCNGC | 3 cut(s) | 837, 2763, 3301 |
| BmcAI | AGTACT | 1 cut(s) | 2149 |
| Bme1390I | CCNGG | 5 cut(s) | 1500, 1717, 1718, 3062, 3179 |
| Bme18I | GGWCC | 2 cut(s) | 2944, 2969 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2371 |
| BmeT110I | CYCGRG | 1 cut(s) | 1716 |
| BmgT120I | GGNCC | 2 cut(s) | 2944, 2969 |
| BmiI | GGNNCC | 3 cut(s) | 913, 2946, 3218 |
| BmrFI | CCNGG | 5 cut(s) | 1500, 1717, 1718, 3062, 3179 |
| BmsI | GCATC | 5 cut(s) | 39, 502, 1111, 1800, 2821 |
| BpiI | GAAGAC | 1 cut(s) | 888 |
| BpmI | CTGGAG | 4 cut(s) | 361, 722, 743, 1754 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1842, 2577 |
| Bpu14I | TTCGAA | 1 cut(s) | 3103 |
| BpuEI | CTTGAG | 2 cut(s) | 1097, 2321 |
| BpuMI | CCSGG | 3 cut(s) | 1717, 1718, 3179 |
| BsaAI | YACGTR | 3 cut(s) | 1565, 2933, 3071 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2346 |
| BsaHI | GRCGYC | 1 cut(s) | 2367 |
| BsaI | GGTCTC | 2 cut(s) | 128, 3074 |
| BsaJI | CCNNGG | 9 cut(s) | 93, 270, 610, 1209, 1498, 1716, 2593, 2730, 3084 |
| BsaWI | WCCGGW | 2 cut(s) | 112, 2827 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1448, 1478, 2301, 2331, 2543, 2573 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 94, 494, 1380, 1828, 2209, 2227, 2302, 2535 |
| Bse1I | ACTGG | 7 cut(s) | 143, 760, 1859, 2034, 2155, 2927, 3332 |
| Bse21I | CCTNAGG | 1 cut(s) | 36 |
| Bse3DI | GCAATG | 2 cut(s) | 1600, 1611 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2346 |
| BseAI | TCCGGA | 1 cut(s) | 2827 |
| BseBI | CCWGG | 2 cut(s) | 1500, 3062 |
| BseDI | CCNNGG | 9 cut(s) | 93, 270, 610, 1209, 1498, 1716, 2593, 2730, 3084 |
| BseJI | GATNNNNATC | 1 cut(s) | 2346 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 94, 494, 1380, 1828, 2209, 2227, 2302, 2535 |
| BseMI | GCAATG | 2 cut(s) | 1600, 1611 |
| BseMII | CTCAG | 4 cut(s) | 27, 690, 2591, 3032 |
| BseNI | ACTGG | 7 cut(s) | 143, 760, 1859, 2034, 2155, 2927, 3332 |
| BseRI | GAGGAG | 4 cut(s) | 59, 1472, 1847, 2225 |
| BseSI | GKGCMC | 1 cut(s) | 2394 |
| BseXI | GCAGC | 3 cut(s) | 847, 2748, 3311 |
| BseYI | CCCAGC | 3 cut(s) | 138, 488, 2562 |
| Bsh1236I | CGCG | 3 cut(s) | 435, 1032, 1544 |
| BshFI | GGCC | 2 cut(s) | 677, 1384 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1665, 2394, 2777, 3270 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1716 |
| BsiSI | CCGG | 4 cut(s) | 113, 1717, 2828, 3179 |
| BslFI | GGGAC | 3 cut(s) | 1733, 2354, 2930 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 94, 494, 1380, 1828, 2209, 2227, 2302, 2535 |
| BsmAI | GTCTC | 4 cut(s) | 128, 2304, 2826, 3074 |
| BsmFI | GGGAC | 3 cut(s) | 1733, 2354, 2930 |
| BsmI | GAATGC | 1 cut(s) | 962 |
| BsnI | GGCC | 2 cut(s) | 677, 1384 |
| Bso31I | GGTCTC | 2 cut(s) | 128, 3074 |
| BsoBI | CYCGRG | 1 cut(s) | 1716 |
| Bsp119I | TTCGAA | 1 cut(s) | 3103 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1665, 2247, 2394, 2777, 3270 |
| Bsp13I | TCCGGA | 1 cut(s) | 2827 |
| Bsp1407I | TGTACA | 1 cut(s) | 1557 |
| Bsp19I | CCATGG | 2 cut(s) | 93, 1209 |
| Bsp68I | TCGCGA | 1 cut(s) | 1032 |
| BspACI | CCGC | 5 cut(s) | 18, 314, 1873, 2356, 3128 |
| BspANI | GGCC | 2 cut(s) | 677, 1384 |
| BspCNI | CTCAG | 4 cut(s) | 28, 691, 2590, 3031 |
| BspEI | TCCGGA | 1 cut(s) | 2827 |
| BspFNI | CGCG | 3 cut(s) | 435, 1032, 1544 |
| BspHI | TCATGA | 2 cut(s) | 9, 1774 |
| BspLI | GGNNCC | 3 cut(s) | 913, 2946, 3218 |
| BspMAI | CTGCAG | 1 cut(s) | 645 |
| BspMI | ACCTGC | 1 cut(s) | 1737 |
| BspPI | GGATC | 4 cut(s) | 146, 294, 479, 1779 |
| BspQI | GCTCTTC | 1 cut(s) | 1473 |
| BspT104I | TTCGAA | 1 cut(s) | 3103 |
| BspTI | CTTAAG | 1 cut(s) | 602 |
| BspTNI | GGTCTC | 2 cut(s) | 128, 3074 |
| BsrDI | GCAATG | 2 cut(s) | 1600, 1611 |
| BsrGI | TGTACA | 1 cut(s) | 1557 |
| BsrI | ACTGG | 7 cut(s) | 143, 760, 1859, 2034, 2155, 2927, 3332 |
| BssECI | CCNNGG | 9 cut(s) | 93, 270, 610, 1209, 1498, 1716, 2593, 2730, 3084 |
| BssNI | GRCGYC | 1 cut(s) | 2367 |
| BssT1I | CCWWGG | 6 cut(s) | 93, 270, 610, 1209, 2730, 3084 |
| Bst2UI | CCWGG | 2 cut(s) | 1500, 3062 |
| Bst6I | CTCTTC | 5 cut(s) | 1473, 2138, 2934, 2949, 3220 |
| BstACI | GRCGYC | 1 cut(s) | 2367 |
| BstAFI | CTTAAG | 1 cut(s) | 602 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 844 |
| BstAUI | TGTACA | 1 cut(s) | 1557 |
| BstBAI | YACGTR | 3 cut(s) | 1565, 2933, 3071 |
| BstBI | TTCGAA | 1 cut(s) | 3103 |
| BstC8I | GCNNGC | 5 cut(s) | 433, 2160, 2194, 2293, 2297 |
| BstDEI | CTNAG | 9 cut(s) | 36, 699, 1125, 1842, 2452, 2577, 2808, 2840, 3018 |
| BstDSI | CCRYGG | 3 cut(s) | 93, 1209, 2593 |
| BstEII | GGTNACC | 1 cut(s) | 935 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 1378, 1826, 2225 |
| BstFNI | CGCG | 3 cut(s) | 435, 1032, 1544 |
| BstMAI | GTCTC | 4 cut(s) | 128, 2304, 2826, 3074 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 844, 1870, 1879, 2098, 2198 |
| BstNI | CCWGG | 2 cut(s) | 1500, 3062 |
| BstNSI | RCATGY | 2 cut(s) | 624, 1552 |
| BstPI | GGTNACC | 1 cut(s) | 935 |
| BstSCI | CCNGG | 5 cut(s) | 1498, 1715, 1716, 3060, 3177 |
| BstSFI | CTRYAG | 1 cut(s) | 641 |
| BstSLI | GKGCMC | 1 cut(s) | 2394 |
| BstUI | CGCG | 3 cut(s) | 435, 1032, 1544 |
| BstV1I | GCAGC | 3 cut(s) | 847, 2748, 3311 |
| BstV2I | GAAGAC | 1 cut(s) | 888 |
| BstX2I | RGATCY | 2 cut(s) | 151, 3290 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 339 |
| BstYI | RGATCY | 2 cut(s) | 151, 3290 |
| Bsu36I | CCTNAGG | 1 cut(s) | 36 |
| BsuI | GTATCC | 1 cut(s) | 808 |
| BsuRI | GGCC | 2 cut(s) | 677, 1384 |
| BtgI | CCRYGG | 3 cut(s) | 93, 1209, 2593 |
| BtgZI | GCGATG | 1 cut(s) | 1047 |
| BtsI | GCAGTG | 1 cut(s) | 3012 |
| BtsIMutI | CAGTG | 9 cut(s) | 772, 1333, 1348, 1406, 1866, 2247, 2775, 3012, 3195 |
| BtuMI | TCGCGA | 1 cut(s) | 1032 |
| BveI | ACCTGC | 1 cut(s) | 1737 |
| Cac8I | GCNNGC | 5 cut(s) | 433, 2160, 2194, 2293, 2297 |
| CaiI | CAGNNNCTG | 1 cut(s) | 649 |
| CciI | TCATGA | 2 cut(s) | 9, 1774 |
| Cfr13I | GGNCC | 2 cut(s) | 2944, 2969 |
| Cfr9I | CCCGGG | 1 cut(s) | 1716 |
| CseI | GACGC | 3 cut(s) | 1396, 1883, 2935 |
| DdeI | CTNAG | 9 cut(s) | 36, 699, 1125, 1842, 2452, 2577, 2808, 2840, 3018 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2371 |
| Eam1104I | CTCTTC | 5 cut(s) | 1473, 2138, 2934, 2949, 3220 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2371 |
| EarI | CTCTTC | 5 cut(s) | 1473, 2138, 2934, 2949, 3220 |
| Eco130I | CCWWGG | 6 cut(s) | 93, 270, 610, 1209, 2730, 3084 |
| Eco24I | GRGCYC | 1 cut(s) | 2247 |
| Eco31I | GGTCTC | 2 cut(s) | 128, 3074 |
| Eco32I | GATATC | 1 cut(s) | 2671 |
| Eco47I | GGWCC | 2 cut(s) | 2944, 2969 |
| Eco57I | CTGAAG | 6 cut(s) | 992, 1308, 2021, 2625, 2958, 3173 |
| Eco81I | CCTNAGG | 1 cut(s) | 36 |
| Eco88I | CYCGRG | 1 cut(s) | 1716 |
| Eco91I | GGTNACC | 1 cut(s) | 935 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 1378, 1826, 2225 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2944 |
| EcoO65I | GGTNACC | 1 cut(s) | 935 |
| EcoRII | CCWGG | 2 cut(s) | 1498, 3060 |
| EcoRV | GATATC | 1 cut(s) | 2671 |
| EcoT14I | CCWWGG | 6 cut(s) | 93, 270, 610, 1209, 2730, 3084 |
| EcoT22I | ATGCAT | 1 cut(s) | 962 |
| EcoT38I | GRGCYC | 1 cut(s) | 2247 |
| ErhI | CCWWGG | 6 cut(s) | 93, 270, 610, 1209, 2730, 3084 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1994, 2026 |
| FaqI | GGGAC | 3 cut(s) | 1733, 2354, 2930 |
| FauI | CCCGC | 1 cut(s) | 25 |
| FauNDI | CATATG | 5 cut(s) | 334, 687, 820, 942, 3322 |
| FbaI | TGATCA | 2 cut(s) | 28, 1396 |
| FblI | GTMKAC | 1 cut(s) | 2994 |
| Fnu4HI | GCNGC | 3 cut(s) | 836, 2762, 3300 |
| FriOI | GRGCYC | 1 cut(s) | 2247 |
| Fsp4HI | GCNGC | 3 cut(s) | 836, 2762, 3300 |
| FspBI | CTAG | 4 cut(s) | 195, 503, 3170, 3210 |
| GluI | GCNGC | 3 cut(s) | 836, 2762, 3300 |
| GsaI | CCCAGC | 3 cut(s) | 142, 492, 2566 |
| GsuI | CTGGAG | 4 cut(s) | 361, 722, 743, 1754 |
| HaeIII | GGCC | 2 cut(s) | 677, 1384 |
| HapII | CCGG | 4 cut(s) | 113, 1717, 2828, 3179 |
| HgaI | GACGC | 3 cut(s) | 1396, 1883, 2935 |
| Hin1I | GRCGYC | 1 cut(s) | 2367 |
| HindIII | AAGCTT | 2 cut(s) | 212, 2090 |
| HinfI | GANTC | 8 cut(s) | 13, 317, 572, 742, 824, 992, 3022, 3310 |
| HpaII | CCGG | 4 cut(s) | 113, 1717, 2828, 3179 |
| HphI | GGTGA | 9 cut(s) | 77, 485, 929, 1094, 1225, 1275, 1484, 2533, 3089 |
| Hpy99I | CGWCG | 1 cut(s) | 1390 |
| HpyCH4IV | ACGT | 6 cut(s) | 1072, 1564, 2119, 2367, 2932, 3070 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 844, 1870, 1879, 2098, 2198 |
| HpyF3I | CTNAG | 9 cut(s) | 36, 699, 1125, 1842, 2452, 2577, 2808, 2840, 3018 |
| HpySE526I | ACGT | 6 cut(s) | 1072, 1564, 2119, 2367, 2932, 3070 |
| Hsp92I | GRCGYC | 1 cut(s) | 2367 |
| Kpn2I | TCCGGA | 1 cut(s) | 2827 |
| Ksp22I | TGATCA | 2 cut(s) | 28, 1396 |
| LguI | GCTCTTC | 1 cut(s) | 1473 |
| LmnI | GCTCC | 8 cut(s) | 614, 1459, 1660, 1735, 2053, 2491, 3247, 3265 |
| Lsp1109I | GCAGC | 3 cut(s) | 847, 2748, 3311 |
| LweI | GCATC | 5 cut(s) | 39, 502, 1111, 1800, 2821 |
| MaeI | CTAG | 4 cut(s) | 195, 503, 3170, 3210 |
| MaeII | ACGT | 6 cut(s) | 1072, 1564, 2119, 2367, 2932, 3070 |
| MaeIII | GTNAC | 5 cut(s) | 767, 935, 1202, 1426, 2555 |
| MflI | RGATCY | 2 cut(s) | 151, 3290 |
| MhlI | GDGCHC | 5 cut(s) | 1665, 2247, 2394, 2777, 3270 |
| MluI | ACGCGT | 1 cut(s) | 1542 |
| MlyI | GAGTC | 5 cut(s) | 7, 311, 566, 751, 1001 |
| MmeI | TCCRAC | 4 cut(s) | 1936, 2107, 2496, 3243 |
| Mph1103I | ATGCAT | 1 cut(s) | 962 |
| MroI | TCCGGA | 1 cut(s) | 2827 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2006 |
| MseI | TTAA | 9 cut(s) | 603, 963, 1221, 1506, 1707, 2088, 2180, 2586, 2802 |
| MspA1I | CMGCKG | 2 cut(s) | 1873, 2162 |
| MspCI | CTTAAG | 1 cut(s) | 602 |
| MspI | CCGG | 4 cut(s) | 113, 1717, 2828, 3179 |
| MspR9I | CCNGG | 5 cut(s) | 1500, 1717, 1718, 3062, 3179 |
| Mva1269I | GAATGC | 1 cut(s) | 962 |
| MvaI | CCWGG | 2 cut(s) | 1500, 3062 |
| MvnI | CGCG | 3 cut(s) | 435, 1032, 1544 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 844, 1870, 1879, 2098, 2198 |
| NciI | CCSGG | 3 cut(s) | 1717, 1718, 3179 |
| NcoI | CCATGG | 2 cut(s) | 93, 1209 |
| NdeI | CATATG | 5 cut(s) | 334, 687, 820, 942, 3322 |
| NlaIV | GGNNCC | 3 cut(s) | 913, 2946, 3218 |
| NmuCI | GTSAC | 3 cut(s) | 767, 935, 1202 |
| NruI | TCGCGA | 1 cut(s) | 1032 |
| NsiI | ATGCAT | 1 cut(s) | 962 |
| NspI | RCATGY | 2 cut(s) | 624, 1552 |
| NspV | TTCGAA | 1 cut(s) | 3103 |
| OliI | CACNNNNGTG | 2 cut(s) | 1211, 1344 |
| PagI | TCATGA | 2 cut(s) | 9, 1774 |
| PciSI | GCTCTTC | 1 cut(s) | 1473 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1918 |
| PctI | GAATGC | 1 cut(s) | 962 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2006 |
| PfeI | GAWTC | 3 cut(s) | 824, 3022, 3310 |
| PflFI | GACNNNGTC | 3 cut(s) | 799, 1390, 1781 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 94 |
| PkrI | GCNGC | 3 cut(s) | 837, 2763, 3301 |
| PleI | GAGTC | 5 cut(s) | 7, 311, 566, 750, 1000 |
| PpsI | GAGTC | 5 cut(s) | 7, 311, 566, 750, 1000 |
| Ppu21I | YACGTR | 3 cut(s) | 1565, 2933, 3071 |
| PpuMI | RGGWCCY | 1 cut(s) | 2944 |
| PshBI | ATTAAT | 2 cut(s) | 963, 1221 |
| PsiI | TTATAA | 1 cut(s) | 521 |
| Psp5II | RGGWCCY | 1 cut(s) | 2944 |
| Psp6I | CCWGG | 2 cut(s) | 1498, 3060 |
| PspEI | GGTNACC | 1 cut(s) | 935 |
| PspFI | CCCAGC | 3 cut(s) | 138, 488, 2562 |
| PspGI | CCWGG | 2 cut(s) | 1498, 3060 |
| PspN4I | GGNNCC | 3 cut(s) | 913, 2946, 3218 |
| PspPI | GGNCC | 2 cut(s) | 2944, 2969 |
| PspPPI | RGGWCCY | 1 cut(s) | 2944 |
| PstI | CTGCAG | 1 cut(s) | 645 |
| PstNI | CAGNNNCTG | 1 cut(s) | 649 |
| PsuI | RGATCY | 2 cut(s) | 151, 3290 |
| PsyI | GACNNNGTC | 3 cut(s) | 799, 1390, 1781 |
| PvuII | CAGCTG | 1 cut(s) | 2162 |
| RruI | TCGCGA | 1 cut(s) | 1032 |
| SapI | GCTCTTC | 1 cut(s) | 1473 |
| SaqAI | TTAA | 9 cut(s) | 603, 963, 1221, 1506, 1707, 2088, 2180, 2586, 2802 |
| SatI | GCNGC | 3 cut(s) | 836, 2762, 3300 |
| Sau96I | GGNCC | 2 cut(s) | 2944, 2969 |
| ScaI | AGTACT | 1 cut(s) | 2149 |
| SchI | GAGTC | 5 cut(s) | 7, 311, 566, 751, 1001 |
| ScrFI | CCNGG | 5 cut(s) | 1500, 1717, 1718, 3062, 3179 |
| SduI | GDGCHC | 5 cut(s) | 1665, 2247, 2394, 2777, 3270 |
| SfaNI | GCATC | 5 cut(s) | 39, 502, 1111, 1800, 2821 |
| SfcI | CTRYAG | 1 cut(s) | 641 |
| SfuI | TTCGAA | 1 cut(s) | 3103 |
| SinI | GGWCC | 2 cut(s) | 2944, 2969 |
| SmaI | CCCGGG | 1 cut(s) | 1718 |
| SmlI | CTYRAG | 3 cut(s) | 602, 1076, 2300 |
| SmoI | CTYRAG | 3 cut(s) | 602, 1076, 2300 |
| SsiI | CCGC | 5 cut(s) | 18, 314, 1873, 2356, 3128 |
| SspI | AATATT | 1 cut(s) | 1277 |
| SspMI | CTAG | 4 cut(s) | 195, 503, 3170, 3210 |
| StyD4I | CCNGG | 5 cut(s) | 1498, 1715, 1716, 3060, 3177 |
| StyI | CCWWGG | 6 cut(s) | 93, 270, 610, 1209, 2730, 3084 |
| TaiI | ACGT | 6 cut(s) | 1075, 1567, 2122, 2370, 2935, 3073 |
| TaqI | TCGA | 9 cut(s) | 954, 1261, 2174, 2217, 2268, 2287, 2424, 2901, 3103 |
| TatI | WGTACW | 4 cut(s) | 762, 1557, 2147, 3278 |
| TfiI | GAWTC | 3 cut(s) | 824, 3022, 3310 |
| Tru1I | TTAA | 9 cut(s) | 603, 963, 1221, 1506, 1707, 2088, 2180, 2586, 2802 |
| Tru9I | TTAA | 9 cut(s) | 603, 963, 1221, 1506, 1707, 2088, 2180, 2586, 2802 |
| TscAI | CASTG | 9 cut(s) | 772, 1333, 1348, 1406, 1866, 2254, 2782, 3019, 3202 |
| TseFI | GTSAC | 3 cut(s) | 767, 935, 1202 |
| TseI | GCWGC | 3 cut(s) | 835, 2761, 3299 |
| Tsp45I | GTSAC | 3 cut(s) | 767, 935, 1202 |
| TspMI | CCCGGG | 1 cut(s) | 1716 |
| TspRI | CASTG | 9 cut(s) | 772, 1333, 1348, 1406, 1866, 2254, 2782, 3019, 3202 |
| Tth111I | GACNNNGTC | 3 cut(s) | 799, 1390, 1781 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 94 |
| Vha464I | CTTAAG | 1 cut(s) | 602 |
| VneI | GTGCAC | 1 cut(s) | 2390 |
| VpaK11BI | GGWCC | 2 cut(s) | 2944, 2969 |
| VspI | ATTAAT | 2 cut(s) | 963, 1221 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 1378, 1826, 2225 |
| XapI | RAATTY | 6 cut(s) | 325, 1409, 1523, 2276, 3033, 3137 |
| XceI | RCATGY | 2 cut(s) | 624, 1552 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2303, 2737 |
| XmaI | CCCGGG | 1 cut(s) | 1716 |
| XmiI | GTMKAC | 1 cut(s) | 2994 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2006 |
| XspI | CTAG | 4 cut(s) | 195, 503, 3170, 3210 |
| ZraI | GACGTC | 1 cut(s) | 2368 |
| ZrmI | AGTACT | 1 cut(s) | 2149 |
| Zsp2I | ATGCAT | 1 cut(s) | 962 |