Rroxscaffold_4G00312220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000333
Physical Location & Seq
Forward (+)
35053300 .. 35060304
7005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00312220.1

Sequence Viewer

Length: 387 bp
ATGGCCAATGGAAGATTGAGAGGTGATTTTCGTCGTGCTCGGGCTGCAGCCCAGCATTTTTCTATTTATAGCTGTCGGATCCCTTTAATTATCAAAATCAACGGTCCAGATCTGTGGACCGTTGCATTCAAACTGCAAAGTAGCCCAACGGCTACAGGCCACATCGCCCCACGCCACTACACGACAAAATCCTGGCGGCTACGCGCCTGCGTCTTGTTGCCGCTAGAAGACACGCAGTTGACCTTCGGTTCTTCAGCTACGCGCGTCTTCCCTCTCCTCTTCTTCTTGGGCCAGCGTGGCAGCCGGGGTCATGGCCTCGGTCACCATGGTGCCCTGGGCCTCCCACCGTGGTATAGCCCCGGATCCGGTGGAAGGATGAATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

14.08

Weight (kDa)

11.51

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 329
AccII CGCG 3 cut(s) 204, 262, 264
AciI CCGC 2 cut(s) 196, 221
AclWI GGATC 4 cut(s) 73, 86, 357, 370
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 237
AfiI CCNNNNNNNGG 2 cut(s) 365, 372
AgsI TTSAA 1 cut(s) 130
AjnI CCWGG 2 cut(s) 191, 333
AleI CACNNNNGTG 1 cut(s) 327
AluBI AGCT 2 cut(s) 72, 257
AluI AGCT 2 cut(s) 72, 257
Alw21I GWGCWC 1 cut(s) 40
AlwI GGATC 4 cut(s) 73, 86, 357, 370
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 5 cut(s) 3, 157, 289, 313, 337
ApeKI GCWGC 3 cut(s) 44, 47, 300
AspLEI GCGC 2 cut(s) 206, 264
AspS9I GGNCC 4 cut(s) 104, 117, 289, 337
AsuC2I CCSGG 2 cut(s) 305, 360
AsuHPI GGTGA 2 cut(s) 35, 314
AvaI CYCGRG 1 cut(s) 39
AvaII GGWCC 2 cut(s) 104, 117
BaeGI GKGCMC 1 cut(s) 334
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 2 cut(s) 78, 362
BanI GGYRCC 1 cut(s) 329
BbsI GAAGAC 2 cut(s) 234, 259
Bbv12I GWGCWC 1 cut(s) 40
BbvI GCAGC 3 cut(s) 31, 59, 312
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 2 cut(s) 193, 335
BcnI CCSGG 2 cut(s) 305, 360
BfaI CTAG 1 cut(s) 224
BfmI CTRYAG 2 cut(s) 45, 153
BglI GCCNNNNNGGC 1 cut(s) 297
BglII AGATCT 1 cut(s) 109
BisI GCNGC 5 cut(s) 45, 48, 197, 221, 301
BlsI GCNGC 5 cut(s) 46, 49, 198, 222, 302
Bme1390I CCNGG 4 cut(s) 193, 305, 335, 360
Bme18I GGWCC 2 cut(s) 104, 117
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 4 cut(s) 104, 117, 289, 337
BmiI GGNNCC 3 cut(s) 80, 331, 364
BmrFI CCNGG 4 cut(s) 193, 305, 335, 360
BpiI GAAGAC 2 cut(s) 234, 259
BpuMI CCSGG 2 cut(s) 305, 360
BsaJI CCNNGG 7 cut(s) 304, 316, 325, 333, 334, 347, 358
BsaWI WCCGGW 1 cut(s) 365
Bsc4I CCNNNNNNNGG 2 cut(s) 365, 372
BseBI CCWGG 2 cut(s) 193, 335
BseDI CCNNGG 7 cut(s) 304, 316, 325, 333, 334, 347, 358
BseGI GGATG 1 cut(s) 381
BseLI CCNNNNNNNGG 2 cut(s) 365, 372
BseRI GAGGAG 1 cut(s) 266
BseSI GKGCMC 1 cut(s) 334
BseXI GCAGC 3 cut(s) 31, 59, 312
BseYI CCCAGC 1 cut(s) 51
Bsh1236I CGCG 3 cut(s) 204, 262, 264
BshFI GGCC 5 cut(s) 5, 159, 291, 315, 339
BshNI GGYRCC 1 cut(s) 329
BsiHKAI GWGCWC 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 3 cut(s) 304, 360, 366
BslI CCNNNNNNNGG 2 cut(s) 365, 372
BsmI GAATGC 1 cut(s) 125
BsnI GGCC 5 cut(s) 5, 159, 291, 315, 339
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 2 cut(s) 40, 334
Bsp143I GATC 3 cut(s) 78, 109, 362
Bsp19I CCATGG 1 cut(s) 325
BspACI CCGC 2 cut(s) 196, 221
BspANI GGCC 5 cut(s) 5, 159, 291, 315, 339
BspFNI CGCG 3 cut(s) 204, 262, 264
BspLI GGNNCC 3 cut(s) 80, 331, 364
BspMAI CTGCAG 1 cut(s) 49
BspPI GGATC 4 cut(s) 73, 86, 357, 370
BspT107I GGYRCC 1 cut(s) 329
BssECI CCNNGG 7 cut(s) 304, 316, 325, 333, 334, 347, 358
BssMI GATC 3 cut(s) 78, 109, 362
BssT1I CCWWGG 1 cut(s) 325
Bst2UI CCWGG 2 cut(s) 193, 335
Bst4CI ACNGT 3 cut(s) 104, 121, 348
Bst6I CTCTTC 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 208, 293
BstDSI CCRYGG 2 cut(s) 325, 347
BstEII GGTNACC 1 cut(s) 320
BstF5I GGATG 1 cut(s) 381
BstFNI CGCG 3 cut(s) 204, 262, 264
BstHHI GCGC 2 cut(s) 206, 264
BstKTI GATC 3 cut(s) 81, 112, 365
BstMBI GATC 3 cut(s) 78, 109, 362
BstMWI GCNNNNNNNGC 2 cut(s) 44, 297
BstNI CCWGG 2 cut(s) 193, 335
BstPI GGTNACC 1 cut(s) 320
BstSCI CCNGG 4 cut(s) 191, 303, 333, 358
BstSFI CTRYAG 2 cut(s) 45, 153
BstSLI GKGCMC 1 cut(s) 334
BstUI CGCG 3 cut(s) 204, 262, 264
BstV1I GCAGC 3 cut(s) 31, 59, 312
BstV2I GAAGAC 2 cut(s) 234, 259
BstX2I RGATCY 3 cut(s) 78, 109, 362
BstXI CCANNNNNNTGG 1 cut(s) 114
BstYI RGATCY 3 cut(s) 78, 109, 362
BsuRI GGCC 5 cut(s) 5, 159, 291, 315, 339
BtgI CCRYGG 2 cut(s) 325, 347
BtgZI GCGATG 1 cut(s) 148
BtsCI GGATG 1 cut(s) 381
Cac8I GCNNGC 2 cut(s) 208, 293
CfoI GCGC 2 cut(s) 206, 264
Cfr13I GGNCC 4 cut(s) 104, 117, 289, 337
CseI GACGC 2 cut(s) 199, 253
CviAII CATG 2 cut(s) 311, 326
DpnI GATC 3 cut(s) 80, 111, 364
DpnII GATC 3 cut(s) 78, 109, 362
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
Eco130I CCWWGG 1 cut(s) 325
Eco47I GGWCC 2 cut(s) 104, 117
Eco57I CTGAAG 1 cut(s) 237
Eco88I CYCGRG 1 cut(s) 39
Eco91I GGTNACC 1 cut(s) 320
EcoO65I GGTNACC 1 cut(s) 320
EcoRII CCWGG 2 cut(s) 191, 333
EcoT14I CCWWGG 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 325
FaeI CATG 2 cut(s) 314, 329
FaiI YATR 4 cut(s) 69, 312, 327, 354
FatI CATG 2 cut(s) 310, 325
Fnu4HI GCNGC 5 cut(s) 45, 48, 197, 221, 301
Fsp4HI GCNGC 5 cut(s) 45, 48, 197, 221, 301
FspBI CTAG 1 cut(s) 224
GlaI GCGC 2 cut(s) 205, 263
GluI GCNGC 5 cut(s) 45, 48, 197, 221, 301
GsaI CCCAGC 1 cut(s) 55
HaeIII GGCC 5 cut(s) 5, 159, 291, 315, 339
HapII CCGG 3 cut(s) 304, 360, 366
HgaI GACGC 2 cut(s) 199, 253
HhaI GCGC 2 cut(s) 206, 264
Hin1II CATG 2 cut(s) 314, 329
Hin6I GCGC 2 cut(s) 204, 262
HinP1I GCGC 2 cut(s) 204, 262
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HpaII CCGG 3 cut(s) 304, 360, 366
HphI GGTGA 2 cut(s) 35, 314
Hpy166II GTNNAC 2 cut(s) 117, 240
Hpy188I TCNGA 1 cut(s) 78
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 2 cut(s) 117, 240
Hpy99I CGWCG 1 cut(s) 36
HpyAV CCTTC 2 cut(s) 253, 366
HpyCH4III ACNGT 3 cut(s) 104, 121, 348
HpyCH4V TGCA 3 cut(s) 47, 125, 136
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 297
Hsp92II CATG 2 cut(s) 314, 329
HspAI GCGC 2 cut(s) 204, 262
Kzo9I GATC 3 cut(s) 78, 109, 362
Lsp1109I GCAGC 3 cut(s) 31, 59, 312
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 320
MalI GATC 3 cut(s) 80, 111, 364
MboI GATC 3 cut(s) 78, 109, 362
MboII GAAGA 6 cut(s) 24, 239, 243, 259, 271, 274
MflI RGATCY 3 cut(s) 78, 109, 362
MhlI GDGCHC 2 cut(s) 40, 334
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 87
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 5 cut(s) 14, 282, 287, 326, 350
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 1 cut(s) 327
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 304, 360, 366
MspR9I CCNGG 4 cut(s) 193, 305, 335, 360
Mva1269I GAATGC 1 cut(s) 125
MvaI CCWGG 2 cut(s) 193, 335
MvnI CGCG 3 cut(s) 204, 262, 264
MwoI GCNNNNNNNGC 2 cut(s) 44, 297
NciI CCSGG 2 cut(s) 305, 360
NcoI CCATGG 1 cut(s) 325
NdeII GATC 3 cut(s) 78, 109, 362
NlaIII CATG 2 cut(s) 314, 329
NlaIV GGNNCC 3 cut(s) 80, 331, 364
NmuCI GTSAC 1 cut(s) 320
OliI CACNNNNGTG 1 cut(s) 327
PasI CCCWGGG 1 cut(s) 334
PctI GAATGC 1 cut(s) 125
PkrI GCNGC 5 cut(s) 46, 49, 198, 222, 302
Psp6I CCWGG 2 cut(s) 191, 333
PspEI GGTNACC 1 cut(s) 320
PspFI CCCAGC 1 cut(s) 51
PspGI CCWGG 2 cut(s) 191, 333
PspN4I GGNNCC 3 cut(s) 80, 331, 364
PspPI GGNCC 4 cut(s) 104, 117, 289, 337
PstI CTGCAG 1 cut(s) 49
PsuI RGATCY 3 cut(s) 78, 109, 362
RseI CAYNNNNRTG 1 cut(s) 327
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 5 cut(s) 45, 48, 197, 221, 301
Sau3AI GATC 3 cut(s) 78, 109, 362
Sau96I GGNCC 4 cut(s) 104, 117, 289, 337
ScrFI CCNGG 4 cut(s) 193, 305, 335, 360
SduI GDGCHC 2 cut(s) 40, 334
SetI ASST 4 cut(s) 25, 74, 245, 259
SfcI CTRYAG 2 cut(s) 45, 153
SinI GGWCC 2 cut(s) 104, 117
SmiMI CAYNNNNRTG 1 cut(s) 327
Sse9I AATT 1 cut(s) 87
SsiI CCGC 2 cut(s) 196, 221
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 4 cut(s) 191, 303, 333, 358
StyI CCWWGG 1 cut(s) 325
TaaI ACNGT 3 cut(s) 104, 121, 348
TaqII GACCGA 1 cut(s) 308
TasI AATT 1 cut(s) 87
TauI GCSGC 2 cut(s) 199, 223
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 3 cut(s) 44, 47, 300
Tsp45I GTSAC 1 cut(s) 320
VpaK11BI GGWCC 2 cut(s) 104, 117
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.