Ubiquitin carboxyl-terminal hydrolase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MATH_2 | PF22486 | 56 - 179 | 4.9e-39 | MATH domain |
| MATH | PF00917 | 61 - 180 | 1.4e-17 | MATH domain |
| UCH | PF00443 | 199 - 520 | 1.5e-59 | Ubiquitin carboxyl-terminal hydrolase |
| UCH_1 | PF13423 | 199 - 474 | 1.8e-15 | Ubiquitin carboxyl-terminal hydrolase |
| USP7_ICP0_bdg | PF12436 | 624 - 876 | 3.6e-78 | ICP0-binding domain of Ubiquitin-specific protease 7 |
| USP7_C2 | PF14533 | 886 - 1055 | 7.1e-46 | Ubiquitin-specific protease C-terminal |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 521 |
| AatII | GACGTC | 1 cut(s) | 2376 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 94 |
| AccBSI | CCGCTC | 1 cut(s) | 3023 |
| AccI | GTMKAC | 2 cut(s) | 2607, 3000 |
| AccII | CGCG | 1 cut(s) | 1544 |
| AciI | CCGC | 9 cut(s) | 21, 240, 314, 515, 530, 1487, 1873, 2362, 3021 |
| AclWI | GGATC | 6 cut(s) | 146, 294, 479, 1779, 2093, 2522 |
| AcsI | RAATTY | 6 cut(s) | 325, 1409, 1523, 2276, 3039, 3143 |
| AcuI | CTGAAG | 5 cut(s) | 722, 992, 1308, 2021, 2964 |
| AcyI | GRCGYC | 1 cut(s) | 2373 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 94, 494, 1828, 2209, 2227, 2302, 2541 |
| AflII | CTTAAG | 1 cut(s) | 602 |
| AflIII | ACRYGT | 1 cut(s) | 1542 |
| AjnI | CCWGG | 1 cut(s) | 1498 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1994, 2007, 2026, 2039, 2319, 2351 |
| AleI | CACNNNNGTG | 2 cut(s) | 1211, 1344 |
| Alw21I | GWGCWC | 3 cut(s) | 1665, 2400, 2783 |
| Alw26I | GTCTC | 5 cut(s) | 1197, 2304, 2411, 2832, 3080 |
| Alw44I | GTGCAC | 1 cut(s) | 2396 |
| AlwI | GGATC | 6 cut(s) | 146, 294, 479, 1779, 2093, 2522 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 649 |
| Ama87I | CYCGRG | 2 cut(s) | 1716, 2855 |
| AoxI | GGCC | 1 cut(s) | 60 |
| ApaLI | GTGCAC | 1 cut(s) | 2396 |
| ApeKI | GCWGC | 2 cut(s) | 835, 3166 |
| ApoI | RAATTY | 6 cut(s) | 325, 1409, 1523, 2276, 3039, 3143 |
| AseI | ATTAAT | 2 cut(s) | 963, 1221 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2006, 2949 |
| AspS9I | GGNCC | 2 cut(s) | 2027, 2975 |
| AsuC2I | CCSGG | 2 cut(s) | 1717, 1718 |
| AsuHPI | GGTGA | 7 cut(s) | 77, 485, 929, 1225, 1275, 1484, 3095 |
| AvaI | CYCGRG | 2 cut(s) | 1716, 2855 |
| AvaII | GGWCC | 2 cut(s) | 2027, 2975 |
| BaeGI | GKGCMC | 2 cut(s) | 1453, 2400 |
| BanII | GRGCYC | 1 cut(s) | 2247 |
| BauI | CACGAG | 1 cut(s) | 503 |
| Bbv12I | GWGCWC | 3 cut(s) | 1665, 2400, 2783 |
| BbvCI | CCTCAGC | 1 cut(s) | 2583 |
| BbvI | GCAGC | 2 cut(s) | 847, 3153 |
| BccI | CCATC | 7 cut(s) | 721, 804, 2273, 2300, 2386, 2539, 2733 |
| BceAI | ACGGC | 1 cut(s) | 2147 |
| BciT130I | CCWGG | 1 cut(s) | 1500 |
| BciVI | GTATCC | 2 cut(s) | 808, 3105 |
| BclI | TGATCA | 3 cut(s) | 28, 1396, 2920 |
| BcnI | CCSGG | 2 cut(s) | 1717, 1718 |
| BcoDI | GTCTC | 5 cut(s) | 1197, 2304, 2411, 2832, 3080 |
| BfaI | CTAG | 1 cut(s) | 195 |
| BfmI | CTRYAG | 1 cut(s) | 641 |
| BfrI | CTTAAG | 1 cut(s) | 602 |
| BfuI | GTATCC | 2 cut(s) | 808, 3105 |
| BisI | GCNGC | 4 cut(s) | 21, 241, 836, 3167 |
| BlsI | GCNGC | 4 cut(s) | 22, 242, 837, 3168 |
| BmcAI | AGTACT | 1 cut(s) | 2149 |
| Bme1390I | CCNGG | 3 cut(s) | 1500, 1717, 1718 |
| Bme18I | GGWCC | 2 cut(s) | 2027, 2975 |
| BmeT110I | CYCGRG | 2 cut(s) | 1716, 2855 |
| BmgT120I | GGNCC | 2 cut(s) | 2027, 2975 |
| BmiI | GGNNCC | 3 cut(s) | 913, 2952, 3057 |
| BmrFI | CCNGG | 3 cut(s) | 1500, 1717, 1718 |
| BmsI | GCATC | 5 cut(s) | 39, 502, 1111, 1800, 2827 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 486, 518 |
| BpmI | CTGGAG | 4 cut(s) | 743, 899, 1475, 1754 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1842, 2583 |
| BpuEI | CTTGAG | 2 cut(s) | 1097, 2321 |
| BpuMI | CCSGG | 2 cut(s) | 1717, 1718 |
| Bsa29I | ATCGAT | 1 cut(s) | 2268 |
| BsaAI | YACGTR | 2 cut(s) | 1565, 2939 |
| BsaHI | GRCGYC | 1 cut(s) | 2373 |
| BsaI | GGTCTC | 1 cut(s) | 3080 |
| BsaJI | CCNNGG | 9 cut(s) | 63, 93, 270, 610, 1209, 1498, 1716, 2736, 3090 |
| BsaWI | WCCGGW | 2 cut(s) | 2029, 2338 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1448, 1478, 2301, 2331 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 94, 494, 1828, 2209, 2227, 2302, 2541 |
| Bse1I | ACTGG | 8 cut(s) | 143, 760, 882, 1458, 1859, 2155, 2333, 2933 |
| Bse3DI | GCAATG | 2 cut(s) | 1600, 1611 |
| BseBI | CCWGG | 1 cut(s) | 1500 |
| BseCI | ATCGAT | 1 cut(s) | 2268 |
| BseDI | CCNNGG | 9 cut(s) | 63, 93, 270, 610, 1209, 1498, 1716, 2736, 3090 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 94, 494, 1828, 2209, 2227, 2302, 2541 |
| BseMI | GCAATG | 2 cut(s) | 1600, 1611 |
| BseMII | CTCAG | 3 cut(s) | 690, 2597, 3038 |
| BseNI | ACTGG | 8 cut(s) | 143, 760, 882, 1458, 1859, 2155, 2333, 2933 |
| BseRI | GAGGAG | 4 cut(s) | 59, 1472, 1847, 2225 |
| BseSI | GKGCMC | 2 cut(s) | 1453, 2400 |
| BseXI | GCAGC | 2 cut(s) | 847, 3153 |
| BseYI | CCCAGC | 2 cut(s) | 488, 2568 |
| Bsh1236I | CGCG | 1 cut(s) | 1544 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2426 |
| BshFI | GGCC | 1 cut(s) | 62 |
| BshVI | ATCGAT | 1 cut(s) | 2268 |
| BsiEI | CGRYCG | 1 cut(s) | 2426 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1665, 2400, 2783 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1716, 2855 |
| BsiSI | CCGG | 4 cut(s) | 59, 1717, 2030, 2339 |
| BslFI | GGGAC | 2 cut(s) | 1733, 2360 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 94, 494, 1828, 2209, 2227, 2302, 2541 |
| BsmAI | GTCTC | 5 cut(s) | 1197, 2304, 2411, 2832, 3080 |
| BsmBI | CGTCTC | 1 cut(s) | 2411 |
| BsmFI | GGGAC | 2 cut(s) | 1733, 2360 |
| BsmI | GAATGC | 2 cut(s) | 962, 2720 |
| BsnI | GGCC | 1 cut(s) | 62 |
| Bso31I | GGTCTC | 1 cut(s) | 3080 |
| BsoBI | CYCGRG | 2 cut(s) | 1716, 2855 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1453, 1665, 2247, 2400, 2783 |
| Bsp1407I | TGTACA | 1 cut(s) | 1557 |
| Bsp19I | CCATGG | 2 cut(s) | 93, 1209 |
| BspACI | CCGC | 9 cut(s) | 21, 240, 314, 515, 530, 1487, 1873, 2362, 3021 |
| BspANI | GGCC | 1 cut(s) | 62 |
| BspCNI | CTCAG | 3 cut(s) | 691, 2596, 3037 |
| BspDI | ATCGAT | 1 cut(s) | 2268 |
| BspFNI | CGCG | 1 cut(s) | 1544 |
| BspHI | TCATGA | 2 cut(s) | 9, 1774 |
| BspLI | GGNNCC | 3 cut(s) | 913, 2952, 3057 |
| BspMAI | CTGCAG | 1 cut(s) | 645 |
| BspPI | GGATC | 6 cut(s) | 146, 294, 479, 1779, 2093, 2522 |
| BspQI | GCTCTTC | 1 cut(s) | 741 |
| BspTI | CTTAAG | 1 cut(s) | 602 |
| BspTNI | GGTCTC | 1 cut(s) | 3080 |
| BsrBI | CCGCTC | 1 cut(s) | 3023 |
| BsrDI | GCAATG | 2 cut(s) | 1600, 1611 |
| BsrGI | TGTACA | 1 cut(s) | 1557 |
| BsrI | ACTGG | 8 cut(s) | 143, 760, 882, 1458, 1859, 2155, 2333, 2933 |
| BssECI | CCNNGG | 9 cut(s) | 63, 93, 270, 610, 1209, 1498, 1716, 2736, 3090 |
| BssNI | GRCGYC | 1 cut(s) | 2373 |
| BssSI | CACGAG | 1 cut(s) | 503 |
| BssT1I | CCWWGG | 6 cut(s) | 93, 270, 610, 1209, 2736, 3090 |
| Bst2BI | CACGAG | 1 cut(s) | 503 |
| Bst2UI | CCWGG | 1 cut(s) | 1500 |
| Bst6I | CTCTTC | 6 cut(s) | 741, 1145, 1473, 2138, 2940, 2955 |
| BstACI | GRCGYC | 1 cut(s) | 2373 |
| BstAFI | CTTAAG | 1 cut(s) | 602 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 844 |
| BstAUI | TGTACA | 1 cut(s) | 1557 |
| BstBAI | YACGTR | 2 cut(s) | 1565, 2939 |
| BstC8I | GCNNGC | 4 cut(s) | 2160, 2194, 2293, 2297 |
| BstDEI | CTNAG | 9 cut(s) | 699, 1125, 1842, 2458, 2583, 2814, 2846, 3024, 3162 |
| BstDSI | CCRYGG | 2 cut(s) | 93, 1209 |
| BstEII | GGTNACC | 1 cut(s) | 935 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1826, 2225 |
| BstFNI | CGCG | 1 cut(s) | 1544 |
| BstMAI | GTCTC | 5 cut(s) | 1197, 2304, 2411, 2832, 3080 |
| BstMCI | CGRYCG | 1 cut(s) | 2426 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 844, 1870, 1879, 2198 |
| BstNI | CCWGG | 1 cut(s) | 1500 |
| BstNSI | RCATGY | 2 cut(s) | 624, 1552 |
| BstPI | GGTNACC | 1 cut(s) | 935 |
| BstSCI | CCNGG | 3 cut(s) | 1498, 1715, 1716 |
| BstSFI | CTRYAG | 1 cut(s) | 641 |
| BstSLI | GKGCMC | 2 cut(s) | 1453, 2400 |
| BstUI | CGCG | 1 cut(s) | 1544 |
| BstV1I | GCAGC | 2 cut(s) | 847, 3153 |
| BstX2I | RGATCY | 1 cut(s) | 151 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 339 |
| BstYI | RGATCY | 1 cut(s) | 151 |
| Bsu15I | ATCGAT | 1 cut(s) | 2268 |
| BsuI | GTATCC | 2 cut(s) | 808, 3105 |
| BsuRI | GGCC | 1 cut(s) | 62 |
| BsuTUI | ATCGAT | 1 cut(s) | 2268 |
| BtgI | CCRYGG | 2 cut(s) | 93, 1209 |
| BtsIMutI | CAGTG | 8 cut(s) | 772, 1333, 1348, 1406, 1451, 1866, 2247, 2781 |
| Cac8I | GCNNGC | 4 cut(s) | 2160, 2194, 2293, 2297 |
| CaiI | CAGNNNCTG | 1 cut(s) | 649 |
| CciI | TCATGA | 2 cut(s) | 9, 1774 |
| Cfr13I | GGNCC | 2 cut(s) | 2027, 2975 |
| Cfr9I | CCCGGG | 1 cut(s) | 1716 |
| ClaI | ATCGAT | 1 cut(s) | 2268 |
| CseI | GACGC | 2 cut(s) | 1396, 1883 |
| DdeI | CTNAG | 9 cut(s) | 699, 1125, 1842, 2458, 2583, 2814, 2846, 3024, 3162 |
| Eam1104I | CTCTTC | 6 cut(s) | 741, 1145, 1473, 2138, 2940, 2955 |
| EarI | CTCTTC | 6 cut(s) | 741, 1145, 1473, 2138, 2940, 2955 |
| Eco130I | CCWWGG | 6 cut(s) | 93, 270, 610, 1209, 2736, 3090 |
| Eco24I | GRGCYC | 1 cut(s) | 2247 |
| Eco31I | GGTCTC | 1 cut(s) | 3080 |
| Eco32I | GATATC | 1 cut(s) | 3181 |
| Eco47I | GGWCC | 2 cut(s) | 2027, 2975 |
| Eco57I | CTGAAG | 5 cut(s) | 722, 992, 1308, 2021, 2964 |
| Eco88I | CYCGRG | 2 cut(s) | 1716, 2855 |
| Eco91I | GGTNACC | 1 cut(s) | 935 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1826, 2225 |
| EcoO65I | GGTNACC | 1 cut(s) | 935 |
| EcoRII | CCWGG | 1 cut(s) | 1498 |
| EcoRV | GATATC | 1 cut(s) | 3181 |
| EcoT14I | CCWWGG | 6 cut(s) | 93, 270, 610, 1209, 2736, 3090 |
| EcoT22I | ATGCAT | 1 cut(s) | 962 |
| EcoT38I | GRGCYC | 1 cut(s) | 2247 |
| ErhI | CCWWGG | 6 cut(s) | 93, 270, 610, 1209, 2736, 3090 |
| Esp3I | CGTCTC | 1 cut(s) | 2411 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1994, 2026 |
| FaqI | GGGAC | 2 cut(s) | 1733, 2360 |
| FauNDI | CATATG | 5 cut(s) | 334, 568, 687, 820, 942 |
| FbaI | TGATCA | 3 cut(s) | 28, 1396, 2920 |
| FblI | GTMKAC | 2 cut(s) | 2607, 3000 |
| Fnu4HI | GCNGC | 4 cut(s) | 21, 241, 836, 3167 |
| FriOI | GRGCYC | 1 cut(s) | 2247 |
| Fsp4HI | GCNGC | 4 cut(s) | 21, 241, 836, 3167 |
| FspBI | CTAG | 1 cut(s) | 195 |
| GluI | GCNGC | 4 cut(s) | 21, 241, 836, 3167 |
| GsaI | CCCAGC | 2 cut(s) | 492, 2572 |
| GsuI | CTGGAG | 4 cut(s) | 743, 899, 1475, 1754 |
| HaeIII | GGCC | 1 cut(s) | 62 |
| HapII | CCGG | 4 cut(s) | 59, 1717, 2030, 2339 |
| HgaI | GACGC | 2 cut(s) | 1396, 1883 |
| Hin1I | GRCGYC | 1 cut(s) | 2373 |
| HindIII | AAGCTT | 2 cut(s) | 212, 2090 |
| HinfI | GANTC | 8 cut(s) | 168, 317, 572, 646, 742, 824, 992, 3028 |
| HpaII | CCGG | 4 cut(s) | 59, 1717, 2030, 2339 |
| HphI | GGTGA | 7 cut(s) | 77, 485, 929, 1225, 1275, 1484, 3095 |
| Hpy99I | CGWCG | 1 cut(s) | 1390 |
| HpyCH4IV | ACGT | 6 cut(s) | 1072, 1564, 2119, 2373, 2933, 2938 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 844, 1870, 1879, 2198 |
| HpyF3I | CTNAG | 9 cut(s) | 699, 1125, 1842, 2458, 2583, 2814, 2846, 3024, 3162 |
| HpySE526I | ACGT | 6 cut(s) | 1072, 1564, 2119, 2373, 2933, 2938 |
| Hsp92I | GRCGYC | 1 cut(s) | 2373 |
| Ksp22I | TGATCA | 3 cut(s) | 28, 1396, 2920 |
| LguI | GCTCTTC | 1 cut(s) | 741 |
| LmnI | GCTCC | 6 cut(s) | 614, 1459, 1660, 1735, 2053, 2497 |
| Lsp1109I | GCAGC | 2 cut(s) | 847, 3153 |
| LweI | GCATC | 5 cut(s) | 39, 502, 1111, 1800, 2827 |
| MaeI | CTAG | 1 cut(s) | 195 |
| MaeII | ACGT | 6 cut(s) | 1072, 1564, 2119, 2373, 2933, 2938 |
| MaeIII | GTNAC | 6 cut(s) | 935, 1426, 1482, 1571, 2561, 2934 |
| MbiI | CCGCTC | 1 cut(s) | 3023 |
| MflI | RGATCY | 1 cut(s) | 151 |
| MhlI | GDGCHC | 5 cut(s) | 1453, 1665, 2247, 2400, 2783 |
| MluI | ACGCGT | 1 cut(s) | 1542 |
| MlyI | GAGTC | 4 cut(s) | 566, 640, 751, 1001 |
| MmeI | TCCRAC | 2 cut(s) | 2107, 3089 |
| Mph1103I | ATGCAT | 1 cut(s) | 962 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2006, 2949 |
| MspA1I | CMGCKG | 2 cut(s) | 1873, 2162 |
| MspCI | CTTAAG | 1 cut(s) | 602 |
| MspI | CCGG | 4 cut(s) | 59, 1717, 2030, 2339 |
| MspR9I | CCNGG | 3 cut(s) | 1500, 1717, 1718 |
| Mva1269I | GAATGC | 2 cut(s) | 962, 2720 |
| MvaI | CCWGG | 1 cut(s) | 1500 |
| MvnI | CGCG | 1 cut(s) | 1544 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 844, 1870, 1879, 2198 |
| NciI | CCSGG | 2 cut(s) | 1717, 1718 |
| NcoI | CCATGG | 2 cut(s) | 93, 1209 |
| NdeI | CATATG | 5 cut(s) | 334, 568, 687, 820, 942 |
| NlaIV | GGNNCC | 3 cut(s) | 913, 2952, 3057 |
| NmuCI | GTSAC | 2 cut(s) | 935, 1571 |
| NsiI | ATGCAT | 1 cut(s) | 962 |
| NspI | RCATGY | 2 cut(s) | 624, 1552 |
| OliI | CACNNNNGTG | 2 cut(s) | 1211, 1344 |
| PaeR7I | CTCGAG | 1 cut(s) | 2855 |
| PagI | TCATGA | 2 cut(s) | 9, 1774 |
| PciSI | GCTCTTC | 1 cut(s) | 741 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1918, 2214, 2223 |
| PctI | GAATGC | 2 cut(s) | 962, 2720 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2006, 2949 |
| PfeI | GAWTC | 4 cut(s) | 168, 317, 824, 3028 |
| PflFI | GACNNNGTC | 2 cut(s) | 799, 1781 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 94 |
| PkrI | GCNGC | 4 cut(s) | 22, 242, 837, 3168 |
| Ple19I | CGATCG | 1 cut(s) | 2426 |
| PleI | GAGTC | 4 cut(s) | 566, 640, 750, 1000 |
| PpsI | GAGTC | 4 cut(s) | 566, 640, 750, 1000 |
| Ppu21I | YACGTR | 2 cut(s) | 1565, 2939 |
| PshBI | ATTAAT | 2 cut(s) | 963, 1221 |
| PsiI | TTATAA | 1 cut(s) | 521 |
| Psp6I | CCWGG | 1 cut(s) | 1498 |
| PspEI | GGTNACC | 1 cut(s) | 935 |
| PspFI | CCCAGC | 2 cut(s) | 488, 2568 |
| PspGI | CCWGG | 1 cut(s) | 1498 |
| PspN4I | GGNNCC | 3 cut(s) | 913, 2952, 3057 |
| PspPI | GGNCC | 2 cut(s) | 2027, 2975 |
| PspXI | VCTCGAGB | 1 cut(s) | 2855 |
| PstI | CTGCAG | 1 cut(s) | 645 |
| PstNI | CAGNNNCTG | 1 cut(s) | 649 |
| PsuI | RGATCY | 1 cut(s) | 151 |
| PsyI | GACNNNGTC | 2 cut(s) | 799, 1781 |
| PvuI | CGATCG | 1 cut(s) | 2426 |
| PvuII | CAGCTG | 1 cut(s) | 2162 |
| SapI | GCTCTTC | 1 cut(s) | 741 |
| SatI | GCNGC | 4 cut(s) | 21, 241, 836, 3167 |
| Sau96I | GGNCC | 2 cut(s) | 2027, 2975 |
| ScaI | AGTACT | 1 cut(s) | 2149 |
| SchI | GAGTC | 4 cut(s) | 566, 640, 751, 1001 |
| ScrFI | CCNGG | 3 cut(s) | 1500, 1717, 1718 |
| SduI | GDGCHC | 5 cut(s) | 1453, 1665, 2247, 2400, 2783 |
| SfaNI | GCATC | 5 cut(s) | 39, 502, 1111, 1800, 2827 |
| SfcI | CTRYAG | 1 cut(s) | 641 |
| Sfr274I | CTCGAG | 1 cut(s) | 2855 |
| SinI | GGWCC | 2 cut(s) | 2027, 2975 |
| SlaI | CTCGAG | 1 cut(s) | 2855 |
| SmaI | CCCGGG | 1 cut(s) | 1718 |
| SmlI | CTYRAG | 4 cut(s) | 602, 1076, 2300, 2855 |
| SmoI | CTYRAG | 4 cut(s) | 602, 1076, 2300, 2855 |
| SsiI | CCGC | 9 cut(s) | 21, 240, 314, 515, 530, 1487, 1873, 2362, 3021 |
| SspI | AATATT | 1 cut(s) | 1277 |
| SspMI | CTAG | 1 cut(s) | 195 |
| StyD4I | CCNGG | 3 cut(s) | 1498, 1715, 1716 |
| StyI | CCWWGG | 6 cut(s) | 93, 270, 610, 1209, 2736, 3090 |
| TaiI | ACGT | 6 cut(s) | 1075, 1567, 2122, 2376, 2936, 2941 |
| TaqII | GACCGA | 1 cut(s) | 1399 |
| TatI | WGTACW | 4 cut(s) | 762, 1557, 2147, 2658 |
| TauI | GCSGC | 2 cut(s) | 23, 243 |
| TfiI | GAWTC | 4 cut(s) | 168, 317, 824, 3028 |
| TscAI | CASTG | 8 cut(s) | 772, 1333, 1348, 1406, 1458, 1866, 2254, 2788 |
| TseFI | GTSAC | 2 cut(s) | 935, 1571 |
| TseI | GCWGC | 2 cut(s) | 835, 3166 |
| Tsp45I | GTSAC | 2 cut(s) | 935, 1571 |
| TspMI | CCCGGG | 1 cut(s) | 1716 |
| TspRI | CASTG | 8 cut(s) | 772, 1333, 1348, 1406, 1458, 1866, 2254, 2788 |
| Tth111I | GACNNNGTC | 2 cut(s) | 799, 1781 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 94 |
| Vha464I | CTTAAG | 1 cut(s) | 602 |
| VneI | GTGCAC | 1 cut(s) | 2396 |
| VpaK11BI | GGWCC | 2 cut(s) | 2027, 2975 |
| VspI | ATTAAT | 2 cut(s) | 963, 1221 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1826, 2225 |
| XapI | RAATTY | 6 cut(s) | 325, 1409, 1523, 2276, 3039, 3143 |
| XceI | RCATGY | 2 cut(s) | 624, 1552 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2303, 2743 |
| XhoI | CTCGAG | 1 cut(s) | 2855 |
| XmaI | CCCGGG | 1 cut(s) | 1716 |
| XmiI | GTMKAC | 2 cut(s) | 2607, 3000 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2006, 2949 |
| XspI | CTAG | 1 cut(s) | 195 |
| ZraI | GACGTC | 1 cut(s) | 2374 |
| ZrmI | AGTACT | 1 cut(s) | 2149 |
| Zsp2I | ATGCAT | 1 cut(s) | 962 |