Rroxscaffold_1G00030450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000333
Physical Location & Seq
Forward (+)
40075224 .. 40096874
21651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00030450.1

Sequence Viewer

Length: 183 bp
ATGGCCACTGGAAGATTGAGAGGCAATTTTCGTCGTGCTCGGGCTGCAGCCCAGAATTTTTCTGGTAGAGTTACTCAATCCCTTGGGTACGATACTCTCACTTTCCCTTTACTAAAACTTGACCTCCTATACTTGGGAGTAGGGCACATCATACACAAATTGCATATATTTTCATACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.79

Weight (kDa)

10.96

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000333)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11910 AT3G11910 AT3G11910 AT3G11910 AT5G06600 AT5G06600 AT5G06600
fragaria_vesca FvH4_3g26930 FvH4_3g39132 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220 FvH4_6g21220
malus_domestica MD02G1261100.v1.1 MD03G1161100.v1.1 MD07G1059900.v1.1 MD11G1177100.v1.1 MD12G1047900.v1.1 MD12G1048000.v1.1 MD12G1048400.v1.1 MD12G1048500.v1.1 MD12G1048700.v1.1 MD12G1048800.v1.1 MD12G1056200.v1.1 MD14G1046300.v1.1 MD14G1046500.v1.1 MD15G1166900.v1.1
prunus_persica Prupe.2G066200_v2.0.a1 Prupe.2G066200_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.6G149500_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1 Prupe.7G087600_v2.0.a1
pyrus_communis pycom02g22320 pycom03g11340 pycom07g04580 pycom11g14290 pycom11g15110 pycom12g04110 pycom12g04140 pycom12g04160 pycom12g04210 pycom12g04220 pycom12g04230 pycom12g04290 pycom12g04320 pycom12g04330 pycom12g04350 pycom12g04360 pycom14g03880 pycom14g03900 pycom16g18750
rosa_chinensis RchiOBHm_Chr1g0324111 RchiOBHm_Chr1g0324241 RchiOBHm_Chr3g0477691 RchiOBHm_Chr5g0049371 RchiOBHm_Chr5g0070531
rosa_laevigata RLG00000008612 RLG00000023698 RLG00000034613 RLG00000036139
rosa_multiflora Rmu_co8271779.1_g000001 Rmu_sc0006187.1_g000014
rosa_roxburghii Rroxscaffold_1G00010670 Rroxscaffold_1G00030450 Rroxscaffold_1G00031950 Rroxscaffold_1G00031970 Rroxscaffold_1G00032320 Rroxscaffold_1G00055490 Rroxscaffold_2G00083610 Rroxscaffold_2G00084480 Rroxscaffold_2G00115610 Rroxscaffold_3G00261320 Rroxscaffold_4G00312220 Rroxscaffold_4G00325820 Rroxscaffold_5G00339170 Rroxscaffold_5G00364030 Rroxscaffold_6G00403750
rosa_rugosa Rorug03G0162700 Rorug03G0162800 Rorug03G0162900 Rorug05G0247700 Rorug05G0406600 Rorug05G0406800
rosa_samantha Rh1AG060300 Rh3AG213000 Rh3BG246600 Rh3CG240400 Rh3DG239700 Rh5AG324400 Rh5AG462100 Rh5BG335500 Rh5BG480200 Rh5BG480300 Rh5CG360200 Rh5CG504500 Rh5CG504600 Rh5DG347800 Rh5DG492200 Rh5DG492300
rosa_wichuraiana Rw3G019270 Rw3G026910 Rw5G030650 Rw5G032610 Rw5G043040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 55
AfaI GTAC 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 133
Alw21I GWGCWC 1 cut(s) 40
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 44, 47
ApoI RAATTY 1 cut(s) 55
AvaI CYCGRG 1 cut(s) 39
BaeGI GKGCMC 1 cut(s) 147
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 40
BbvI GCAGC 2 cut(s) 31, 59
BfmI CTRYAG 1 cut(s) 45
BisI GCNGC 2 cut(s) 45, 48
BlsI GCNGC 2 cut(s) 46, 49
BmeT110I CYCGRG 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 82
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 13
BseSI GKGCMC 1 cut(s) 147
BseXI GCAGC 2 cut(s) 31, 59
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 133
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 2 cut(s) 40, 147
BspANI GGCC 1 cut(s) 5
BspMAI CTGCAG 1 cut(s) 49
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 82
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 45
BstSLI GKGCMC 1 cut(s) 147
BstV1I GCAGC 2 cut(s) 31, 59
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 6
Csp6I GTAC 1 cut(s) 88
CviJI RGCY 3 cut(s) 5, 44, 50
CviKI_1 RGCY 3 cut(s) 5, 44, 50
CviQI GTAC 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 82
Eco88I CYCGRG 1 cut(s) 39
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
FaiI YATR 5 cut(s) 130, 152, 165, 167, 175
Fnu4HI GCNGC 2 cut(s) 45, 48
Fsp4HI GCNGC 2 cut(s) 45, 48
GluI GCNGC 2 cut(s) 45, 48
HaeIII GGCC 1 cut(s) 5
Hpy99I CGWCG 1 cut(s) 36
HpyCH4V TGCA 2 cut(s) 47, 163
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
LpnPI CCDG 2 cut(s) 48, 65
Lsp1109I GCAGC 2 cut(s) 31, 59
MaeIII GTNAC 1 cut(s) 70
MboII GAAGA 1 cut(s) 24
MhlI GDGCHC 2 cut(s) 40, 147
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 25, 55, 158
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 2 cut(s) 14, 134
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 178
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 1 cut(s) 44
PkrI GCNGC 2 cut(s) 46, 49
PstI CTGCAG 1 cut(s) 49
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 178
SatI GCNGC 2 cut(s) 45, 48
SduI GDGCHC 2 cut(s) 40, 147
SetI ASST 1 cut(s) 126
SfcI CTRYAG 1 cut(s) 45
SgeI CNNG 9 cut(s) 21, 47, 51, 53, 64, 75, 95, 131, 145
SmiMI CAYNNNNRTG 1 cut(s) 178
Sse9I AATT 3 cut(s) 25, 55, 158
StyI CCWWGG 1 cut(s) 82
TasI AATT 3 cut(s) 25, 55, 158
TscAI CASTG 1 cut(s) 13
TseI GCWGC 2 cut(s) 44, 47
TspDTI ATGAA 1 cut(s) 162
TspRI CASTG 1 cut(s) 13
XapI RAATTY 1 cut(s) 55
XcmI CCANNNNNNNNNTGG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.