Ubiquitin carboxyl-terminal hydrolase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MATH_2 | PF22486 | 50 - 94 | 1.5e-06 | MATH domain |
| UCH | PF00443 | 116 - 437 | 1.4e-59 | Ubiquitin carboxyl-terminal hydrolase |
| UCH_1 | PF13423 | 116 - 391 | 1.7e-15 | Ubiquitin carboxyl-terminal hydrolase |
| USP7_ICP0_bdg | PF12436 | 541 - 793 | 3.4e-78 | ICP0-binding domain of Ubiquitin-specific protease 7 |
| USP7_C2 | PF14533 | 803 - 1013 | 1.2e-54 | Ubiquitin-specific protease C-terminal |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 2127 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 94 |
| AccBSI | CCGCTC | 1 cut(s) | 2774 |
| AccI | GTMKAC | 2 cut(s) | 2358, 2751 |
| AccII | CGCG | 1 cut(s) | 1295 |
| AciI | CCGC | 6 cut(s) | 185, 281, 1238, 1624, 2113, 2772 |
| AclWI | GGATC | 4 cut(s) | 165, 1530, 1844, 2273 |
| AcoI | YGGCCR | 1 cut(s) | 2933 |
| AcsI | RAATTY | 6 cut(s) | 196, 1160, 1274, 2027, 2790, 2894 |
| AcuI | CTGAAG | 7 cut(s) | 473, 743, 1059, 1772, 2382, 2715, 2930 |
| AcyI | GRCGYC | 1 cut(s) | 2124 |
| AfaI | GTAC | 9 cut(s) | 273, 515, 941, 1089, 1157, 1298, 1310, 1900, 2411 |
| AfeI | AGCGCT | 1 cut(s) | 3037 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 94, 1579, 1960, 1978, 2053, 2292 |
| AflII | CTTAAG | 1 cut(s) | 353 |
| AflIII | ACRYGT | 1 cut(s) | 1293 |
| AjnI | CCWGG | 3 cut(s) | 142, 1249, 2704 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1745, 1758, 1777, 1790, 2070, 2102 |
| AleI | CACNNNNGTG | 2 cut(s) | 962, 1095 |
| Alw21I | GWGCWC | 4 cut(s) | 1416, 2151, 2534, 3027 |
| Alw26I | GTCTC | 7 cut(s) | 500, 948, 2055, 2162, 2583, 2831, 2968 |
| Alw44I | GTGCAC | 1 cut(s) | 2147 |
| AlwI | GGATC | 4 cut(s) | 165, 1530, 1844, 2273 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 400 |
| Ama87I | CYCGRG | 2 cut(s) | 1467, 2606 |
| Aor51HI | AGCGCT | 1 cut(s) | 3037 |
| AoxI | GGCC | 2 cut(s) | 60, 2933 |
| ApaLI | GTGCAC | 1 cut(s) | 2147 |
| ApeKI | GCWGC | 2 cut(s) | 586, 3056 |
| ApoI | RAATTY | 6 cut(s) | 196, 1160, 1274, 2027, 2790, 2894 |
| AseI | ATTAAT | 2 cut(s) | 714, 972 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1757, 2700 |
| AspLEI | GCGC | 1 cut(s) | 3038 |
| AspS9I | GGNCC | 2 cut(s) | 1778, 2726 |
| AsuC2I | CCSGG | 2 cut(s) | 1468, 1469 |
| AsuHPI | GGTGA | 7 cut(s) | 77, 680, 976, 1026, 1235, 2846, 3103 |
| AvaI | CYCGRG | 2 cut(s) | 1467, 2606 |
| AvaII | GGWCC | 2 cut(s) | 1778, 2726 |
| BaeGI | GKGCMC | 2 cut(s) | 1204, 2151 |
| BanII | GRGCYC | 1 cut(s) | 1998 |
| Bbv12I | GWGCWC | 4 cut(s) | 1416, 2151, 2534, 3027 |
| BbvCI | CCTCAGC | 1 cut(s) | 2334 |
| BbvI | GCAGC | 2 cut(s) | 598, 3068 |
| BccI | CCATC | 7 cut(s) | 472, 555, 2024, 2051, 2137, 2290, 2484 |
| BceAI | ACGGC | 1 cut(s) | 1898 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2904, 2938 |
| BciT130I | CCWGG | 3 cut(s) | 144, 1251, 2706 |
| BciVI | GTATCC | 2 cut(s) | 559, 2856 |
| BclI | TGATCA | 3 cut(s) | 28, 1147, 2671 |
| BcnI | CCSGG | 2 cut(s) | 1468, 1469 |
| BcoDI | GTCTC | 7 cut(s) | 500, 948, 2055, 2162, 2583, 2831, 2968 |
| BfaI | CTAG | 2 cut(s) | 2927, 2967 |
| BfmI | CTRYAG | 1 cut(s) | 392 |
| BfoI | RGCGCY | 1 cut(s) | 3039 |
| BfrI | CTTAAG | 1 cut(s) | 353 |
| BfuI | GTATCC | 2 cut(s) | 559, 2856 |
| BisI | GCNGC | 2 cut(s) | 587, 3057 |
| BlsI | GCNGC | 2 cut(s) | 588, 3058 |
| BmcAI | AGTACT | 1 cut(s) | 1900 |
| Bme1390I | CCNGG | 5 cut(s) | 144, 1251, 1468, 1469, 2706 |
| Bme18I | GGWCC | 2 cut(s) | 1778, 2726 |
| BmeT110I | CYCGRG | 2 cut(s) | 1467, 2606 |
| BmgT120I | GGNCC | 2 cut(s) | 1778, 2726 |
| BmiI | GGNNCC | 4 cut(s) | 664, 2703, 2808, 2975 |
| BmrFI | CCNGG | 5 cut(s) | 144, 1251, 1468, 1469, 2706 |
| BmsI | GCATC | 4 cut(s) | 39, 862, 1551, 2578 |
| BpmI | CTGGAG | 5 cut(s) | 494, 650, 1226, 1505, 3041 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1593, 2334 |
| BpuEI | CTTGAG | 2 cut(s) | 848, 2072 |
| BpuMI | CCSGG | 2 cut(s) | 1468, 1469 |
| Bsa29I | ATCGAT | 1 cut(s) | 2019 |
| BsaAI | YACGTR | 3 cut(s) | 1316, 2232, 2690 |
| BsaHI | GRCGYC | 1 cut(s) | 2124 |
| BsaI | GGTCTC | 1 cut(s) | 2831 |
| BsaJI | CCNNGG | 9 cut(s) | 63, 93, 361, 960, 1249, 1467, 2487, 2705, 2841 |
| BsaWI | WCCGGW | 2 cut(s) | 1780, 2089 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1199, 1229, 2052, 2082 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 94, 1579, 1960, 1978, 2053, 2292 |
| Bse118I | RCCGGY | 1 cut(s) | 3088 |
| Bse1I | ACTGG | 7 cut(s) | 511, 633, 1209, 1610, 1906, 2084, 2684 |
| Bse3DI | GCAATG | 2 cut(s) | 1351, 1362 |
| BseBI | CCWGG | 3 cut(s) | 144, 1251, 2706 |
| BseCI | ATCGAT | 1 cut(s) | 2019 |
| BseDI | CCNNGG | 9 cut(s) | 63, 93, 361, 960, 1249, 1467, 2487, 2705, 2841 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 94, 1579, 1960, 1978, 2053, 2292 |
| BseMI | GCAATG | 2 cut(s) | 1351, 1362 |
| BseMII | CTCAG | 3 cut(s) | 441, 2348, 2789 |
| BseNI | ACTGG | 7 cut(s) | 511, 633, 1209, 1610, 1906, 2084, 2684 |
| BseRI | GAGGAG | 4 cut(s) | 59, 1223, 1598, 1976 |
| BseSI | GKGCMC | 2 cut(s) | 1204, 2151 |
| BseXI | GCAGC | 2 cut(s) | 598, 3068 |
| BseYI | CCCAGC | 1 cut(s) | 2319 |
| Bsh1236I | CGCG | 1 cut(s) | 1295 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2177 |
| BshFI | GGCC | 2 cut(s) | 62, 2935 |
| BshVI | ATCGAT | 1 cut(s) | 2019 |
| BsiEI | CGRYCG | 1 cut(s) | 2177 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1416, 2151, 2534, 3027 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1467, 2606 |
| BsiSI | CCGG | 5 cut(s) | 59, 1468, 1781, 2090, 3089 |
| BslFI | GGGAC | 1 cut(s) | 2111 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 94, 1579, 1960, 1978, 2053, 2292 |
| BsmAI | GTCTC | 7 cut(s) | 500, 948, 2055, 2162, 2583, 2831, 2968 |
| BsmBI | CGTCTC | 2 cut(s) | 2162, 2968 |
| BsmFI | GGGAC | 1 cut(s) | 2111 |
| BsmI | GAATGC | 2 cut(s) | 713, 2471 |
| BsnI | GGCC | 2 cut(s) | 62, 2935 |
| Bso31I | GGTCTC | 1 cut(s) | 2831 |
| BsoBI | CYCGRG | 2 cut(s) | 1467, 2606 |
| Bsp1286I | GDGCHC | 6 cut(s) | 1204, 1416, 1998, 2151, 2534, 3027 |
| Bsp1407I | TGTACA | 1 cut(s) | 1308 |
| Bsp19I | CCATGG | 2 cut(s) | 93, 960 |
| BspACI | CCGC | 6 cut(s) | 185, 281, 1238, 1624, 2113, 2772 |
| BspANI | GGCC | 2 cut(s) | 62, 2935 |
| BspCNI | CTCAG | 3 cut(s) | 442, 2347, 2788 |
| BspDI | ATCGAT | 1 cut(s) | 2019 |
| BspFNI | CGCG | 1 cut(s) | 1295 |
| BspHI | TCATGA | 2 cut(s) | 9, 1525 |
| BspLI | GGNNCC | 4 cut(s) | 664, 2703, 2808, 2975 |
| BspMAI | CTGCAG | 1 cut(s) | 396 |
| BspPI | GGATC | 4 cut(s) | 165, 1530, 1844, 2273 |
| BspQI | GCTCTTC | 1 cut(s) | 492 |
| BspTI | CTTAAG | 1 cut(s) | 353 |
| BspTNI | GGTCTC | 1 cut(s) | 2831 |
| BsrBI | CCGCTC | 1 cut(s) | 2774 |
| BsrDI | GCAATG | 2 cut(s) | 1351, 1362 |
| BsrFI | RCCGGY | 1 cut(s) | 3088 |
| BsrGI | TGTACA | 1 cut(s) | 1308 |
| BsrI | ACTGG | 7 cut(s) | 511, 633, 1209, 1610, 1906, 2084, 2684 |
| BssAI | RCCGGY | 1 cut(s) | 3088 |
| BssECI | CCNNGG | 9 cut(s) | 63, 93, 361, 960, 1249, 1467, 2487, 2705, 2841 |
| BssNI | GRCGYC | 1 cut(s) | 2124 |
| BssT1I | CCWWGG | 5 cut(s) | 93, 361, 960, 2487, 2841 |
| Bst2UI | CCWGG | 3 cut(s) | 144, 1251, 2706 |
| Bst6I | CTCTTC | 7 cut(s) | 492, 896, 1224, 1889, 2691, 2706, 2977 |
| BstACI | GRCGYC | 1 cut(s) | 2124 |
| BstAFI | CTTAAG | 1 cut(s) | 353 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 595 |
| BstAUI | TGTACA | 1 cut(s) | 1308 |
| BstBAI | YACGTR | 3 cut(s) | 1316, 2232, 2690 |
| BstC8I | GCNNGC | 4 cut(s) | 1911, 1945, 2044, 2048 |
| BstDEI | CTNAG | 8 cut(s) | 450, 876, 1593, 2209, 2334, 2565, 2597, 2775 |
| BstDSI | CCRYGG | 2 cut(s) | 93, 960 |
| BstEII | GGTNACC | 1 cut(s) | 686 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1577, 1976 |
| BstFNI | CGCG | 1 cut(s) | 1295 |
| BstH2I | RGCGCY | 1 cut(s) | 3039 |
| BstHHI | GCGC | 1 cut(s) | 3038 |
| BstMAI | GTCTC | 7 cut(s) | 500, 948, 2055, 2162, 2583, 2831, 2968 |
| BstMCI | CGRYCG | 1 cut(s) | 2177 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 595, 1621, 1630, 1949, 2932, 3056 |
| BstNI | CCWGG | 3 cut(s) | 144, 1251, 2706 |
| BstNSI | RCATGY | 2 cut(s) | 375, 1303 |
| BstPI | GGTNACC | 1 cut(s) | 686 |
| BstSCI | CCNGG | 5 cut(s) | 142, 1249, 1466, 1467, 2704 |
| BstSFI | CTRYAG | 1 cut(s) | 392 |
| BstSLI | GKGCMC | 2 cut(s) | 1204, 2151 |
| BstSNI | TACGTA | 1 cut(s) | 2232 |
| BstUI | CGCG | 1 cut(s) | 1295 |
| BstV1I | GCAGC | 2 cut(s) | 598, 3068 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 210 |
| Bsu15I | ATCGAT | 1 cut(s) | 2019 |
| BsuI | GTATCC | 2 cut(s) | 559, 2856 |
| BsuRI | GGCC | 2 cut(s) | 62, 2935 |
| BsuTUI | ATCGAT | 1 cut(s) | 2019 |
| BtgI | CCRYGG | 2 cut(s) | 93, 960 |
| BtsIMutI | CAGTG | 9 cut(s) | 523, 1084, 1099, 1157, 1202, 1617, 1998, 2532, 2952 |
| Cac8I | GCNNGC | 4 cut(s) | 1911, 1945, 2044, 2048 |
| CaiI | CAGNNNCTG | 1 cut(s) | 400 |
| CciI | TCATGA | 2 cut(s) | 9, 1525 |
| CfoI | GCGC | 1 cut(s) | 3038 |
| Cfr10I | RCCGGY | 1 cut(s) | 3088 |
| Cfr13I | GGNCC | 2 cut(s) | 1778, 2726 |
| Cfr9I | CCCGGG | 1 cut(s) | 1467 |
| ClaI | ATCGAT | 1 cut(s) | 2019 |
| CseI | GACGC | 3 cut(s) | 1147, 1634, 2692 |
| Csp6I | GTAC | 9 cut(s) | 272, 514, 940, 1088, 1156, 1297, 1309, 1899, 2410 |
| CviQI | GTAC | 9 cut(s) | 272, 514, 940, 1088, 1156, 1297, 1309, 1899, 2410 |
| DdeI | CTNAG | 8 cut(s) | 450, 876, 1593, 2209, 2334, 2565, 2597, 2775 |
| EaeI | YGGCCR | 1 cut(s) | 2933 |
| Eam1104I | CTCTTC | 7 cut(s) | 492, 896, 1224, 1889, 2691, 2706, 2977 |
| EarI | CTCTTC | 7 cut(s) | 492, 896, 1224, 1889, 2691, 2706, 2977 |
| Eco105I | TACGTA | 1 cut(s) | 2232 |
| Eco130I | CCWWGG | 5 cut(s) | 93, 361, 960, 2487, 2841 |
| Eco24I | GRGCYC | 1 cut(s) | 1998 |
| Eco31I | GGTCTC | 1 cut(s) | 2831 |
| Eco47I | GGWCC | 2 cut(s) | 1778, 2726 |
| Eco47III | AGCGCT | 1 cut(s) | 3037 |
| Eco57I | CTGAAG | 7 cut(s) | 473, 743, 1059, 1772, 2382, 2715, 2930 |
| Eco88I | CYCGRG | 2 cut(s) | 1467, 2606 |
| Eco91I | GGTNACC | 1 cut(s) | 686 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1577, 1976 |
| EcoO65I | GGTNACC | 1 cut(s) | 686 |
| EcoRII | CCWGG | 3 cut(s) | 142, 1249, 2704 |
| EcoT14I | CCWWGG | 5 cut(s) | 93, 361, 960, 2487, 2841 |
| EcoT22I | ATGCAT | 1 cut(s) | 713 |
| EcoT38I | GRGCYC | 1 cut(s) | 1998 |
| ErhI | CCWWGG | 5 cut(s) | 93, 361, 960, 2487, 2841 |
| Esp3I | CGTCTC | 2 cut(s) | 2162, 2968 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1745, 1777 |
| FaqI | GGGAC | 1 cut(s) | 2111 |
| FauNDI | CATATG | 5 cut(s) | 205, 319, 438, 571, 693 |
| FbaI | TGATCA | 3 cut(s) | 28, 1147, 2671 |
| FblI | GTMKAC | 2 cut(s) | 2358, 2751 |
| Fnu4HI | GCNGC | 2 cut(s) | 587, 3057 |
| FriOI | GRGCYC | 1 cut(s) | 1998 |
| Fsp4HI | GCNGC | 2 cut(s) | 587, 3057 |
| FspBI | CTAG | 2 cut(s) | 2927, 2967 |
| GlaI | GCGC | 1 cut(s) | 3037 |
| GluI | GCNGC | 2 cut(s) | 587, 3057 |
| GsaI | CCCAGC | 1 cut(s) | 2323 |
| GsuI | CTGGAG | 5 cut(s) | 494, 650, 1226, 1505, 3041 |
| HaeII | RGCGCY | 1 cut(s) | 3039 |
| HaeIII | GGCC | 2 cut(s) | 62, 2935 |
| HapII | CCGG | 5 cut(s) | 59, 1468, 1781, 2090, 3089 |
| HgaI | GACGC | 3 cut(s) | 1147, 1634, 2692 |
| HhaI | GCGC | 1 cut(s) | 3038 |
| Hin1I | GRCGYC | 1 cut(s) | 2124 |
| Hin6I | GCGC | 1 cut(s) | 3036 |
| HinP1I | GCGC | 1 cut(s) | 3036 |
| HindIII | AAGCTT | 1 cut(s) | 1841 |
| HinfI | GANTC | 8 cut(s) | 188, 323, 397, 493, 575, 743, 2779, 3067 |
| HpaII | CCGG | 5 cut(s) | 59, 1468, 1781, 2090, 3089 |
| HphI | GGTGA | 7 cut(s) | 77, 680, 976, 1026, 1235, 2846, 3103 |
| Hpy99I | CGWCG | 1 cut(s) | 1141 |
| HpyAV | CCTTC | 8 cut(s) | 325, 637, 677, 767, 1351, 1490, 1492, 2825 |
| HpyCH4IV | ACGT | 6 cut(s) | 823, 1315, 1870, 2124, 2231, 2689 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 595, 1621, 1630, 1949, 2932, 3056 |
| HpyF3I | CTNAG | 8 cut(s) | 450, 876, 1593, 2209, 2334, 2565, 2597, 2775 |
| HpySE526I | ACGT | 6 cut(s) | 823, 1315, 1870, 2124, 2231, 2689 |
| Hsp92I | GRCGYC | 1 cut(s) | 2124 |
| HspAI | GCGC | 1 cut(s) | 3036 |
| Ksp22I | TGATCA | 3 cut(s) | 28, 1147, 2671 |
| LguI | GCTCTTC | 1 cut(s) | 492 |
| LmnI | GCTCC | 9 cut(s) | 365, 1210, 1411, 1486, 1804, 2248, 3004, 3022, 3043 |
| Lsp1109I | GCAGC | 2 cut(s) | 598, 3068 |
| LweI | GCATC | 4 cut(s) | 39, 862, 1551, 2578 |
| MaeI | CTAG | 2 cut(s) | 2927, 2967 |
| MaeII | ACGT | 6 cut(s) | 823, 1315, 1870, 2124, 2231, 2689 |
| MaeIII | GTNAC | 6 cut(s) | 146, 686, 1177, 1233, 1322, 2312 |
| MbiI | CCGCTC | 1 cut(s) | 2774 |
| MhlI | GDGCHC | 6 cut(s) | 1204, 1416, 1998, 2151, 2534, 3027 |
| MluI | ACGCGT | 1 cut(s) | 1293 |
| MlyI | GAGTC | 4 cut(s) | 317, 391, 502, 752 |
| MmeI | TCCRAC | 2 cut(s) | 1858, 2840 |
| Mph1103I | ATGCAT | 1 cut(s) | 713 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1757, 2700 |
| MspA1I | CMGCKG | 2 cut(s) | 1624, 1913 |
| MspCI | CTTAAG | 1 cut(s) | 353 |
| MspI | CCGG | 5 cut(s) | 59, 1468, 1781, 2090, 3089 |
| MspR9I | CCNGG | 5 cut(s) | 144, 1251, 1468, 1469, 2706 |
| Mva1269I | GAATGC | 2 cut(s) | 713, 2471 |
| MvaI | CCWGG | 3 cut(s) | 144, 1251, 2706 |
| MvnI | CGCG | 1 cut(s) | 1295 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 595, 1621, 1630, 1949, 2932, 3056 |
| NciI | CCSGG | 2 cut(s) | 1468, 1469 |
| NcoI | CCATGG | 2 cut(s) | 93, 960 |
| NdeI | CATATG | 5 cut(s) | 205, 319, 438, 571, 693 |
| NlaIV | GGNNCC | 4 cut(s) | 664, 2703, 2808, 2975 |
| NmuCI | GTSAC | 2 cut(s) | 686, 1322 |
| NsiI | ATGCAT | 1 cut(s) | 713 |
| NspI | RCATGY | 2 cut(s) | 375, 1303 |
| OliI | CACNNNNGTG | 2 cut(s) | 962, 1095 |
| PaeR7I | CTCGAG | 1 cut(s) | 2606 |
| PagI | TCATGA | 2 cut(s) | 9, 1525 |
| PciSI | GCTCTTC | 1 cut(s) | 492 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1669, 1965, 1974 |
| PctI | GAATGC | 2 cut(s) | 713, 2471 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1757, 2700 |
| PfeI | GAWTC | 4 cut(s) | 188, 575, 2779, 3067 |
| PflFI | GACNNNGTC | 3 cut(s) | 550, 1532, 2960 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 94 |
| PkrI | GCNGC | 2 cut(s) | 588, 3058 |
| Ple19I | CGATCG | 1 cut(s) | 2177 |
| PleI | GAGTC | 4 cut(s) | 317, 391, 501, 751 |
| PpsI | GAGTC | 4 cut(s) | 317, 391, 501, 751 |
| Ppu21I | YACGTR | 3 cut(s) | 1316, 2232, 2690 |
| PshBI | ATTAAT | 2 cut(s) | 714, 972 |
| Psp6I | CCWGG | 3 cut(s) | 142, 1249, 2704 |
| PspEI | GGTNACC | 1 cut(s) | 686 |
| PspFI | CCCAGC | 1 cut(s) | 2319 |
| PspGI | CCWGG | 3 cut(s) | 142, 1249, 2704 |
| PspN4I | GGNNCC | 4 cut(s) | 664, 2703, 2808, 2975 |
| PspPI | GGNCC | 2 cut(s) | 1778, 2726 |
| PspXI | VCTCGAGB | 1 cut(s) | 2606 |
| PstI | CTGCAG | 1 cut(s) | 396 |
| PstNI | CAGNNNCTG | 1 cut(s) | 400 |
| PsyI | GACNNNGTC | 3 cut(s) | 550, 1532, 2960 |
| PvuI | CGATCG | 1 cut(s) | 2177 |
| PvuII | CAGCTG | 1 cut(s) | 1913 |
| RsaI | GTAC | 9 cut(s) | 273, 515, 941, 1089, 1157, 1298, 1310, 1900, 2411 |
| RsaNI | GTAC | 9 cut(s) | 272, 514, 940, 1088, 1156, 1297, 1309, 1899, 2410 |
| SapI | GCTCTTC | 1 cut(s) | 492 |
| SatI | GCNGC | 2 cut(s) | 587, 3057 |
| Sau96I | GGNCC | 2 cut(s) | 1778, 2726 |
| ScaI | AGTACT | 1 cut(s) | 1900 |
| SchI | GAGTC | 4 cut(s) | 317, 391, 502, 752 |
| ScrFI | CCNGG | 5 cut(s) | 144, 1251, 1468, 1469, 2706 |
| SduI | GDGCHC | 6 cut(s) | 1204, 1416, 1998, 2151, 2534, 3027 |
| SfaNI | GCATC | 4 cut(s) | 39, 862, 1551, 2578 |
| SfcI | CTRYAG | 1 cut(s) | 392 |
| Sfr274I | CTCGAG | 1 cut(s) | 2606 |
| SinI | GGWCC | 2 cut(s) | 1778, 2726 |
| SlaI | CTCGAG | 1 cut(s) | 2606 |
| SmaI | CCCGGG | 1 cut(s) | 1469 |
| SmlI | CTYRAG | 4 cut(s) | 353, 827, 2051, 2606 |
| SmoI | CTYRAG | 4 cut(s) | 353, 827, 2051, 2606 |
| SnaBI | TACGTA | 1 cut(s) | 2232 |
| SsiI | CCGC | 6 cut(s) | 185, 281, 1238, 1624, 2113, 2772 |
| SspI | AATATT | 1 cut(s) | 1028 |
| SspMI | CTAG | 2 cut(s) | 2927, 2967 |
| StyD4I | CCNGG | 5 cut(s) | 142, 1249, 1466, 1467, 2704 |
| StyI | CCWWGG | 5 cut(s) | 93, 361, 960, 2487, 2841 |
| TaiI | ACGT | 6 cut(s) | 826, 1318, 1873, 2127, 2234, 2692 |
| TaqII | GACCGA | 1 cut(s) | 1150 |
| TatI | WGTACW | 4 cut(s) | 513, 1308, 1898, 2409 |
| TfiI | GAWTC | 4 cut(s) | 188, 575, 2779, 3067 |
| TscAI | CASTG | 9 cut(s) | 523, 1084, 1099, 1157, 1209, 1617, 2005, 2539, 2959 |
| TseFI | GTSAC | 2 cut(s) | 686, 1322 |
| TseI | GCWGC | 2 cut(s) | 586, 3056 |
| Tsp45I | GTSAC | 2 cut(s) | 686, 1322 |
| TspMI | CCCGGG | 1 cut(s) | 1467 |
| TspRI | CASTG | 9 cut(s) | 523, 1084, 1099, 1157, 1209, 1617, 2005, 2539, 2959 |
| Tth111I | GACNNNGTC | 3 cut(s) | 550, 1532, 2960 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 94 |
| Vha464I | CTTAAG | 1 cut(s) | 353 |
| VneI | GTGCAC | 1 cut(s) | 2147 |
| VpaK11BI | GGWCC | 2 cut(s) | 1778, 2726 |
| VspI | ATTAAT | 2 cut(s) | 714, 972 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1577, 1976 |
| XapI | RAATTY | 6 cut(s) | 196, 1160, 1274, 2027, 2790, 2894 |
| XceI | RCATGY | 2 cut(s) | 375, 1303 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2054, 2494 |
| XhoI | CTCGAG | 1 cut(s) | 2606 |
| XmaI | CCCGGG | 1 cut(s) | 1467 |
| XmiI | GTMKAC | 2 cut(s) | 2358, 2751 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1757, 2700 |
| XspI | CTAG | 2 cut(s) | 2927, 2967 |
| ZraI | GACGTC | 1 cut(s) | 2125 |
| ZrmI | AGTACT | 1 cut(s) | 1900 |
| Zsp2I | ATGCAT | 1 cut(s) | 713 |