Ubiquitin carboxyl-terminal hydrolase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1374 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 595 |
| AccI | GTMKAC | 1 cut(s) | 109 |
| AccII | CGCG | 1 cut(s) | 2017 |
| AciI | CCGC | 3 cut(s) | 515, 1369, 1696 |
| AclWI | GGATC | 4 cut(s) | 269, 1635, 1783, 1827 |
| AcoI | YGGCCR | 3 cut(s) | 525, 1935, 1971 |
| AcsI | RAATTY | 5 cut(s) | 396, 413, 1076, 1219, 1891 |
| AcuI | CTGAAG | 3 cut(s) | 1290, 1629, 2243 |
| AcyI | GRCGYC | 1 cut(s) | 1517 |
| AfaI | GTAC | 6 cut(s) | 827, 978, 1100, 1364, 1433, 2231 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 595, 1255, 1312, 1441 |
| AgsI | TTSAA | 9 cut(s) | 19, 358, 395, 521, 556, 1201, 1636, 1753, 1797 |
| AjnI | CCWGG | 1 cut(s) | 1566 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 183, 215 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1301, 1333 |
| Alw21I | GWGCWC | 3 cut(s) | 567, 956, 1449 |
| Alw26I | GTCTC | 5 cut(s) | 68, 76, 1005, 1154, 1661 |
| Alw44I | GTGCAC | 1 cut(s) | 563 |
| AlwI | GGATC | 4 cut(s) | 269, 1635, 1783, 1827 |
| AoxI | GGCC | 8 cut(s) | 75, 203, 525, 871, 1573, 1935, 1971, 2202 |
| ApaLI | GTGCAC | 1 cut(s) | 563 |
| ApeKI | GCWGC | 6 cut(s) | 1478, 1619, 1676, 1710, 1757, 1862 |
| ApoI | RAATTY | 5 cut(s) | 396, 413, 1076, 1219, 1891 |
| AseI | ATTAAT | 2 cut(s) | 972, 1089 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1232, 1612 |
| AspLEI | GCGC | 2 cut(s) | 2017, 2038 |
| AspS9I | GGNCC | 4 cut(s) | 75, 203, 1574, 2202 |
| AsuC2I | CCSGG | 1 cut(s) | 1307 |
| AsuHPI | GGTGA | 3 cut(s) | 668, 1574, 1853 |
| AsuNHI | GCTAGC | 1 cut(s) | 1541 |
| AxyI | CCTNAGG | 1 cut(s) | 123 |
| BaeGI | GKGCMC | 1 cut(s) | 567 |
| BalI | TGGCCA | 3 cut(s) | 527, 1937, 1973 |
| BanII | GRGCYC | 1 cut(s) | 1474 |
| BbsI | GAAGAC | 1 cut(s) | 1615 |
| Bbv12I | GWGCWC | 3 cut(s) | 567, 956, 1449 |
| BbvI | GCAGC | 6 cut(s) | 1490, 1606, 1663, 1722, 1769, 1849 |
| BccI | CCATC | 4 cut(s) | 476, 601, 1565, 1666 |
| BceAI | ACGGC | 3 cut(s) | 1745, 2069, 2189 |
| BciT130I | CCWGG | 1 cut(s) | 1568 |
| BciVI | GTATCC | 1 cut(s) | 1278 |
| BcnI | CCSGG | 1 cut(s) | 1307 |
| BcoDI | GTCTC | 5 cut(s) | 68, 76, 1005, 1154, 1661 |
| BfaI | CTAG | 5 cut(s) | 176, 869, 1542, 1715, 2075 |
| BfmI | CTRYAG | 2 cut(s) | 1620, 1863 |
| BfuAI | ACCTGC | 1 cut(s) | 1374 |
| BfuI | GTATCC | 1 cut(s) | 1278 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2033 |
| BglII | AGATCT | 2 cut(s) | 1047, 1056 |
| BisI | GCNGC | 7 cut(s) | 1479, 1620, 1677, 1696, 1711, 1758, 1863 |
| BlsI | GCNGC | 7 cut(s) | 1480, 1621, 1678, 1697, 1712, 1759, 1864 |
| BmcAI | AGTACT | 2 cut(s) | 1100, 2231 |
| Bme1390I | CCNGG | 2 cut(s) | 1307, 1568 |
| BmgT120I | GGNCC | 4 cut(s) | 75, 203, 1574, 2202 |
| BmiI | GGNNCC | 1 cut(s) | 2100 |
| BmrFI | CCNGG | 2 cut(s) | 1307, 1568 |
| BmrI | ACTGGG | 1 cut(s) | 99 |
| BmsI | GCATC | 2 cut(s) | 1480, 1972 |
| BmtI | GCTAGC | 1 cut(s) | 1545 |
| BmuI | ACTGGG | 1 cut(s) | 99 |
| BpiI | GAAGAC | 1 cut(s) | 1615 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1304, 1336 |
| BpmI | CTGGAG | 1 cut(s) | 1569 |
| BpuEI | CTTGAG | 3 cut(s) | 1049, 1799, 2021 |
| BpuMI | CCSGG | 1 cut(s) | 1307 |
| BsaHI | GRCGYC | 1 cut(s) | 1517 |
| BsaI | GGTCTC | 1 cut(s) | 1154 |
| BsaJI | CCNNGG | 5 cut(s) | 1249, 1435, 1512, 1986, 2085 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 595, 1255, 1312, 1441 |
| Bse118I | RCCGGY | 1 cut(s) | 573 |
| Bse1I | ACTGG | 8 cut(s) | 47, 105, 335, 1096, 1106, 1938, 2016, 2037 |
| Bse21I | CCTNAGG | 1 cut(s) | 123 |
| Bse3DI | GCAATG | 2 cut(s) | 1537, 2070 |
| BseBI | CCWGG | 1 cut(s) | 1568 |
| BseDI | CCNNGG | 5 cut(s) | 1249, 1435, 1512, 1986, 2085 |
| BseGI | GGATG | 8 cut(s) | 214, 970, 1003, 1245, 1315, 1576, 1791, 2095 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 595, 1255, 1312, 1441 |
| BseMI | GCAATG | 2 cut(s) | 1537, 2070 |
| BseMII | CTCAG | 5 cut(s) | 137, 270, 1595, 1738, 2049 |
| BseNI | ACTGG | 8 cut(s) | 47, 105, 335, 1096, 1106, 1938, 2016, 2037 |
| BseRI | GAGGAG | 5 cut(s) | 216, 626, 1133, 1328, 1760 |
| BseSI | GKGCMC | 1 cut(s) | 567 |
| BseXI | GCAGC | 6 cut(s) | 1490, 1606, 1663, 1722, 1769, 1849 |
| BsgI | GTGCAG | 2 cut(s) | 71, 702 |
| Bsh1236I | CGCG | 1 cut(s) | 2017 |
| BshFI | GGCC | 8 cut(s) | 77, 205, 527, 873, 1575, 1937, 1973, 2204 |
| BsiHKAI | GWGCWC | 3 cut(s) | 567, 956, 1449 |
| BsiSI | CCGG | 2 cut(s) | 574, 1307 |
| BslFI | GGGAC | 4 cut(s) | 500, 681, 1289, 1944 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 595, 1255, 1312, 1441 |
| BsmAI | GTCTC | 5 cut(s) | 68, 76, 1005, 1154, 1661 |
| BsmBI | CGTCTC | 1 cut(s) | 68 |
| BsmFI | GGGAC | 4 cut(s) | 500, 681, 1289, 1944 |
| BsmI | GAATGC | 1 cut(s) | 1337 |
| BsnI | GGCC | 8 cut(s) | 77, 205, 527, 873, 1575, 1937, 1973, 2204 |
| Bso31I | GGTCTC | 1 cut(s) | 1154 |
| Bsp1286I | GDGCHC | 4 cut(s) | 567, 956, 1449, 1474 |
| Bsp19I | CCATGG | 2 cut(s) | 1249, 1512 |
| BspACI | CCGC | 3 cut(s) | 515, 1369, 1696 |
| BspANI | GGCC | 8 cut(s) | 77, 205, 527, 873, 1575, 1937, 1973, 2204 |
| BspCNI | CTCAG | 5 cut(s) | 136, 271, 1596, 1737, 2050 |
| BspFNI | CGCG | 1 cut(s) | 2017 |
| BspLI | GGNNCC | 1 cut(s) | 2100 |
| BspMAI | CTGCAG | 2 cut(s) | 1624, 1867 |
| BspMI | ACCTGC | 1 cut(s) | 1374 |
| BspOI | GCTAGC | 1 cut(s) | 1545 |
| BspPI | GGATC | 4 cut(s) | 269, 1635, 1783, 1827 |
| BspTNI | GGTCTC | 1 cut(s) | 1154 |
| BsrDI | GCAATG | 2 cut(s) | 1537, 2070 |
| BsrFI | RCCGGY | 1 cut(s) | 573 |
| BsrI | ACTGG | 8 cut(s) | 47, 105, 335, 1096, 1106, 1938, 2016, 2037 |
| BssAI | RCCGGY | 1 cut(s) | 573 |
| BssECI | CCNNGG | 5 cut(s) | 1249, 1435, 1512, 1986, 2085 |
| BssNI | GRCGYC | 1 cut(s) | 1517 |
| BssT1I | CCWWGG | 4 cut(s) | 1249, 1435, 1512, 1986 |
| Bst2UI | CCWGG | 1 cut(s) | 1568 |
| Bst4CI | ACNGT | 5 cut(s) | 932, 958, 1070, 1195, 1690 |
| Bst6I | CTCTTC | 2 cut(s) | 1128, 1399 |
| BstACI | GRCGYC | 1 cut(s) | 1517 |
| BstC8I | GCNNGC | 5 cut(s) | 308, 575, 1543, 1878, 2160 |
| BstDEI | CTNAG | 7 cut(s) | 123, 279, 1464, 1504, 1604, 1724, 2058 |
| BstDSI | CCRYGG | 3 cut(s) | 1249, 1512, 2085 |
| BstEII | GGTNACC | 1 cut(s) | 1562 |
| BstF5I | GGATG | 8 cut(s) | 214, 970, 1003, 1245, 1315, 1576, 1791, 2095 |
| BstFNI | CGCG | 1 cut(s) | 2017 |
| BstHHI | GCGC | 2 cut(s) | 2017, 2038 |
| BstMAI | GTCTC | 5 cut(s) | 68, 76, 1005, 1154, 1661 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 58, 1478, 1586, 2012, 2033 |
| BstNI | CCWGG | 1 cut(s) | 1568 |
| BstNSI | RCATGY | 2 cut(s) | 175, 1950 |
| BstPI | GGTNACC | 1 cut(s) | 1562 |
| BstSCI | CCNGG | 2 cut(s) | 1305, 1566 |
| BstSFI | CTRYAG | 2 cut(s) | 1620, 1863 |
| BstSLI | GKGCMC | 1 cut(s) | 567 |
| BstUI | CGCG | 1 cut(s) | 2017 |
| BstV1I | GCAGC | 6 cut(s) | 1490, 1606, 1663, 1722, 1769, 1849 |
| BstV2I | GAAGAC | 1 cut(s) | 1615 |
| BstX2I | RGATCY | 4 cut(s) | 1047, 1056, 1627, 1819 |
| BstYI | RGATCY | 4 cut(s) | 1047, 1056, 1627, 1819 |
| Bsu36I | CCTNAGG | 1 cut(s) | 123 |
| BsuI | GTATCC | 1 cut(s) | 1278 |
| BsuRI | GGCC | 8 cut(s) | 77, 205, 527, 873, 1575, 1937, 1973, 2204 |
| BtgI | CCRYGG | 3 cut(s) | 1249, 1512, 2085 |
| BtsCI | GGATG | 8 cut(s) | 214, 970, 1003, 1245, 1315, 1576, 1791, 2095 |
| BtsI | GCAGTG | 1 cut(s) | 714 |
| BtsIMutI | CAGTG | 6 cut(s) | 54, 714, 954, 1075, 1191, 1686 |
| BveI | ACCTGC | 1 cut(s) | 1374 |
| Cac8I | GCNNGC | 5 cut(s) | 308, 575, 1543, 1878, 2160 |
| CfoI | GCGC | 2 cut(s) | 2017, 2038 |
| Cfr10I | RCCGGY | 1 cut(s) | 573 |
| Cfr13I | GGNCC | 4 cut(s) | 75, 203, 1574, 2202 |
| CseI | GACGC | 3 cut(s) | 50, 1216, 1506 |
| Csp6I | GTAC | 6 cut(s) | 826, 977, 1099, 1363, 1432, 2230 |
| CviQI | GTAC | 6 cut(s) | 826, 977, 1099, 1363, 1432, 2230 |
| DdeI | CTNAG | 7 cut(s) | 123, 279, 1464, 1504, 1604, 1724, 2058 |
| DraI | TTTAAA | 1 cut(s) | 2133 |
| EaeI | YGGCCR | 3 cut(s) | 525, 1935, 1971 |
| Eam1104I | CTCTTC | 2 cut(s) | 1128, 1399 |
| EarI | CTCTTC | 2 cut(s) | 1128, 1399 |
| Eco130I | CCWWGG | 4 cut(s) | 1249, 1435, 1512, 1986 |
| Eco147I | AGGCCT | 1 cut(s) | 873 |
| Eco24I | GRGCYC | 1 cut(s) | 1474 |
| Eco31I | GGTCTC | 1 cut(s) | 1154 |
| Eco32I | GATATC | 2 cut(s) | 250, 1159 |
| Eco57I | CTGAAG | 3 cut(s) | 1290, 1629, 2243 |
| Eco81I | CCTNAGG | 1 cut(s) | 123 |
| Eco91I | GGTNACC | 1 cut(s) | 1562 |
| EcoO65I | GGTNACC | 1 cut(s) | 1562 |
| EcoRII | CCWGG | 1 cut(s) | 1566 |
| EcoRV | GATATC | 2 cut(s) | 250, 1159 |
| EcoT14I | CCWWGG | 4 cut(s) | 1249, 1435, 1512, 1986 |
| EcoT38I | GRGCYC | 1 cut(s) | 1474 |
| ErhI | CCWWGG | 4 cut(s) | 1249, 1435, 1512, 1986 |
| Esp3I | CGTCTC | 1 cut(s) | 68 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 2216 |
| FaqI | GGGAC | 4 cut(s) | 500, 681, 1289, 1944 |
| FauI | CCCGC | 1 cut(s) | 1362 |
| FauNDI | CATATG | 1 cut(s) | 1741 |
| FblI | GTMKAC | 1 cut(s) | 109 |
| Fnu4HI | GCNGC | 7 cut(s) | 1479, 1620, 1677, 1696, 1711, 1758, 1863 |
| FokI | GGATG | 8 cut(s) | 201, 977, 990, 1232, 1322, 1583, 1798, 2102 |
| FriOI | GRGCYC | 1 cut(s) | 1474 |
| Fsp4HI | GCNGC | 7 cut(s) | 1479, 1620, 1677, 1696, 1711, 1758, 1863 |
| FspBI | CTAG | 5 cut(s) | 176, 869, 1542, 1715, 2075 |
| GlaI | GCGC | 2 cut(s) | 2016, 2037 |
| GluI | GCNGC | 7 cut(s) | 1479, 1620, 1677, 1696, 1711, 1758, 1863 |
| GsuI | CTGGAG | 1 cut(s) | 1569 |
| HaeIII | GGCC | 8 cut(s) | 77, 205, 527, 873, 1575, 1937, 1973, 2204 |
| HapII | CCGG | 2 cut(s) | 574, 1307 |
| HgaI | GACGC | 3 cut(s) | 50, 1216, 1506 |
| HhaI | GCGC | 2 cut(s) | 2017, 2038 |
| Hin1I | GRCGYC | 1 cut(s) | 1517 |
| Hin6I | GCGC | 2 cut(s) | 2015, 2036 |
| HinP1I | GCGC | 2 cut(s) | 2015, 2036 |
| HincII | GTYRAC | 2 cut(s) | 110, 795 |
| HindII | GTYRAC | 2 cut(s) | 110, 795 |
| HindIII | AAGCTT | 1 cut(s) | 266 |
| HpaI | GTTAAC | 1 cut(s) | 795 |
| HpaII | CCGG | 2 cut(s) | 574, 1307 |
| HphI | GGTGA | 3 cut(s) | 668, 1574, 1853 |
| Hpy166II | GTNNAC | 5 cut(s) | 110, 565, 795, 1174, 1641 |
| Hpy188I | TCNGA | 9 cut(s) | 504, 710, 817, 1022, 1378, 1401, 1453, 1605, 2140 |
| Hpy8I | GTNNAC | 5 cut(s) | 110, 565, 795, 1174, 1641 |
| HpyAV | CCTTC | 4 cut(s) | 555, 857, 982, 1243 |
| HpyCH4III | ACNGT | 5 cut(s) | 932, 958, 1070, 1195, 1690 |
| HpyCH4IV | ACGT | 1 cut(s) | 295 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 58, 1478, 1586, 2012, 2033 |
| HpyF3I | CTNAG | 7 cut(s) | 123, 279, 1464, 1504, 1604, 1724, 2058 |
| HpySE526I | ACGT | 1 cut(s) | 295 |
| Hsp92I | GRCGYC | 1 cut(s) | 1517 |
| HspAI | GCGC | 2 cut(s) | 2015, 2036 |
| KroI | GCCGGC | 1 cut(s) | 573 |
| KroNI | GCCGGC | 1 cut(s) | 575 |
| KspAI | GTTAAC | 1 cut(s) | 795 |
| LmnI | GCTCC | 4 cut(s) | 1426, 1444, 1465, 1707 |
| Lsp1109I | GCAGC | 6 cut(s) | 1490, 1606, 1663, 1722, 1769, 1849 |
| LweI | GCATC | 2 cut(s) | 1480, 1972 |
| MaeI | CTAG | 5 cut(s) | 176, 869, 1542, 1715, 2075 |
| MaeII | ACGT | 1 cut(s) | 295 |
| MaeIII | GTNAC | 5 cut(s) | 1189, 1344, 1534, 1562, 1990 |
| MflI | RGATCY | 4 cut(s) | 1047, 1056, 1627, 1819 |
| MhlI | GDGCHC | 4 cut(s) | 567, 956, 1449, 1474 |
| MlsI | TGGCCA | 3 cut(s) | 527, 1937, 1973 |
| MluNI | TGGCCA | 3 cut(s) | 527, 1937, 1973 |
| MlyI | GAGTC | 3 cut(s) | 705, 1517, 2028 |
| MmeI | TCCRAC | 4 cut(s) | 124, 1045, 1422, 2173 |
| Mox20I | TGGCCA | 3 cut(s) | 527, 1937, 1973 |
| MroNI | GCCGGC | 1 cut(s) | 573 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1232, 1612 |
| MscI | TGGCCA | 3 cut(s) | 527, 1937, 1973 |
| MslI | CAYNNNNRTG | 3 cut(s) | 47, 1008, 1808 |
| Msp20I | TGGCCA | 3 cut(s) | 527, 1937, 1973 |
| MspI | CCGG | 2 cut(s) | 574, 1307 |
| MspR9I | CCNGG | 2 cut(s) | 1307, 1568 |
| Mva1269I | GAATGC | 1 cut(s) | 1337 |
| MvaI | CCWGG | 1 cut(s) | 1568 |
| MvnI | CGCG | 1 cut(s) | 2017 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 58, 1478, 1586, 2012, 2033 |
| NaeI | GCCGGC | 1 cut(s) | 575 |
| NciI | CCSGG | 1 cut(s) | 1307 |
| NcoI | CCATGG | 2 cut(s) | 1249, 1512 |
| NdeI | CATATG | 1 cut(s) | 1741 |
| NgoMIV | GCCGGC | 1 cut(s) | 573 |
| NheI | GCTAGC | 1 cut(s) | 1541 |
| NlaIV | GGNNCC | 1 cut(s) | 2100 |
| NmuCI | GTSAC | 3 cut(s) | 1189, 1344, 1562 |
| NspI | RCATGY | 2 cut(s) | 175, 1950 |
| PceI | AGGCCT | 1 cut(s) | 873 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 106, 464 |
| PctI | GAATGC | 1 cut(s) | 1337 |
| PdiI | GCCGGC | 1 cut(s) | 575 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1232, 1612 |
| PfeI | GAWTC | 8 cut(s) | 131, 208, 358, 1123, 1165, 1373, 2071, 2196 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 595 |
| PfoI | TCCNGGA | 1 cut(s) | 1305 |
| PkrI | GCNGC | 7 cut(s) | 1480, 1621, 1678, 1697, 1712, 1759, 1864 |
| PleI | GAGTC | 3 cut(s) | 705, 1516, 2027 |
| PpsI | GAGTC | 3 cut(s) | 705, 1516, 2027 |
| PshBI | ATTAAT | 2 cut(s) | 972, 1089 |
| Psp6I | CCWGG | 1 cut(s) | 1566 |
| PspEI | GGTNACC | 1 cut(s) | 1562 |
| PspGI | CCWGG | 1 cut(s) | 1566 |
| PspN4I | GGNNCC | 1 cut(s) | 2100 |
| PspPI | GGNCC | 4 cut(s) | 75, 203, 1574, 2202 |
| PstI | CTGCAG | 2 cut(s) | 1624, 1867 |
| PsuI | RGATCY | 4 cut(s) | 1047, 1056, 1627, 1819 |
| RsaI | GTAC | 6 cut(s) | 827, 978, 1100, 1364, 1433, 2231 |
| RsaNI | GTAC | 6 cut(s) | 826, 977, 1099, 1363, 1432, 2230 |
| RseI | CAYNNNNRTG | 3 cut(s) | 47, 1008, 1808 |
| SalI | GTCGAC | 1 cut(s) | 108 |
| SatI | GCNGC | 7 cut(s) | 1479, 1620, 1677, 1696, 1711, 1758, 1863 |
| Sau96I | GGNCC | 4 cut(s) | 75, 203, 1574, 2202 |
| ScaI | AGTACT | 2 cut(s) | 1100, 2231 |
| SchI | GAGTC | 3 cut(s) | 705, 1517, 2028 |
| ScrFI | CCNGG | 2 cut(s) | 1307, 1568 |
| SduI | GDGCHC | 4 cut(s) | 567, 956, 1449, 1474 |
| SfaNI | GCATC | 2 cut(s) | 1480, 1972 |
| SfcI | CTRYAG | 2 cut(s) | 1620, 1863 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 47, 1008, 1808 |
| SmlI | CTYRAG | 3 cut(s) | 1028, 1814, 2000 |
| SmoI | CTYRAG | 3 cut(s) | 1028, 1814, 2000 |
| SseBI | AGGCCT | 1 cut(s) | 873 |
| SsiI | CCGC | 3 cut(s) | 515, 1369, 1696 |
| SspI | AATATT | 1 cut(s) | 1087 |
| SspMI | CTAG | 5 cut(s) | 176, 869, 1542, 1715, 2075 |
| StuI | AGGCCT | 1 cut(s) | 873 |
| StyD4I | CCNGG | 2 cut(s) | 1305, 1566 |
| StyI | CCWWGG | 4 cut(s) | 1249, 1435, 1512, 1986 |
| TaaI | ACNGT | 5 cut(s) | 932, 958, 1070, 1195, 1690 |
| TaiI | ACGT | 1 cut(s) | 298 |
| TaqI | TCGA | 6 cut(s) | 109, 467, 1038, 1152, 1597, 1902 |
| TatI | WGTACW | 4 cut(s) | 825, 976, 1098, 2229 |
| TauI | GCSGC | 1 cut(s) | 1698 |
| TfiI | GAWTC | 8 cut(s) | 131, 208, 358, 1123, 1165, 1373, 2071, 2196 |
| TscAI | CASTG | 6 cut(s) | 54, 721, 961, 1075, 1198, 1693 |
| TseFI | GTSAC | 3 cut(s) | 1189, 1344, 1562 |
| TseI | GCWGC | 6 cut(s) | 1478, 1619, 1676, 1710, 1757, 1862 |
| Tsp45I | GTSAC | 3 cut(s) | 1189, 1344, 1562 |
| TspDTI | ATGAA | 7 cut(s) | 399, 537, 572, 846, 887, 1157, 2106 |
| TspGWI | ACGGA | 1 cut(s) | 2063 |
| TspRI | CASTG | 6 cut(s) | 54, 721, 961, 1075, 1198, 1693 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 595 |
| VneI | GTGCAC | 1 cut(s) | 563 |
| VspI | ATTAAT | 2 cut(s) | 972, 1089 |
| XapI | RAATTY | 5 cut(s) | 396, 413, 1076, 1219, 1891 |
| XbaI | TCTAGA | 1 cut(s) | 2074 |
| XceI | RCATGY | 2 cut(s) | 175, 1950 |
| XmiI | GTMKAC | 1 cut(s) | 109 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1232, 1612 |
| XspI | CTAG | 5 cut(s) | 176, 869, 1542, 1715, 2075 |
| ZrmI | AGTACT | 2 cut(s) | 1100, 2231 |