Rh3CG210600

Tropinone reductase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0008147
Physical Location & Seq
Forward (+)
19266791 .. 19268934
2144 bp
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UTR
Exon/CDS
Intron
Rh3CG210600.1

Sequence Viewer

Length: 246 bp
ATGGAAGACAAAGGTTCGGTCTGTGATTTGGTCTCAAATTCCCAACGAGAGGAGCTCATGAACAAGGTTTTGAGTAACGAAAAGTTTTTGGAGGCTGTCATCTCTCGAACCCCATTAGGACGTACTAGAGAGCCTGAAGAGGTGTCTGCATTGGTGGCATTTCTATGCCTTCCGGCAGCCTCTTACATAAGAGGGCAGACTATTTGCGTTGATGGAGGGATGACTGTCAATGGCTTCCACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

81

Amino Acids

8.91

Weight (kDa)

5.0

Isoelectric Point (pI)

33.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 19 - 75 2.2e-13 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 1 cut(s) 124
AfiI CCNNNNNNNGG 1 cut(s) 49
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 37
ArsI GACNNNNNNTTYG 1 cut(s) 35
BanII GRGCYC 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 188
BccI CCATC 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 2 cut(s) 126, 244
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 39, 71
BsaI GGTCTC 1 cut(s) 37
Bsc4I CCNNNNNNNGG 1 cut(s) 49
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 49
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 37
Bso31I GGTCTC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 57
BspHI TCATGA 1 cut(s) 57
BspTNI GGTCTC 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 132
BstF5I GGATG 1 cut(s) 225
BstMAI GTCTC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 12
BtsCI GGATG 1 cut(s) 225
CciI TCATGA 1 cut(s) 57
Csp6I GTAC 1 cut(s) 123
CviAII CATG 1 cut(s) 58
CviJI RGCY 5 cut(s) 55, 95, 133, 179, 234
CviKI_1 RGCY 5 cut(s) 55, 95, 133, 179, 234
CviQI GTAC 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 156
EcoICRI GAGCTC 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 1 cut(s) 61
FaiI YATR 3 cut(s) 59, 166, 188
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 232
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 2 cut(s) 126, 244
GluI GCNGC 1 cut(s) 177
HapII CCGG 1 cut(s) 173
Hin1II CATG 1 cut(s) 61
HpaII CCGG 1 cut(s) 173
Hpy188III TCNNGA 2 cut(s) 58, 105
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 1 cut(s) 61
LmnI GCTCC 1 cut(s) 52
LpnPI CCDG 2 cut(s) 147, 186
Lsp1109I GCAGC 1 cut(s) 188
MaeI CTAG 2 cut(s) 126, 244
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 74
MboII GAAGA 2 cut(s) 17, 149
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 1 cut(s) 37
MnlI CCTC 6 cut(s) 43, 85, 133, 185, 190, 209
MslI CAYNNNNRTG 1 cut(s) 163
MspI CCGG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 155
NlaIII CATG 1 cut(s) 61
PagI TCATGA 1 cut(s) 57
PkrI GCNGC 1 cut(s) 178
Psp124BI GAGCTC 1 cut(s) 57
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 163
SacI GAGCTC 1 cut(s) 57
SatI GCNGC 1 cut(s) 177
SduI GDGCHC 1 cut(s) 57
SetI ASST 5 cut(s) 16, 57, 69, 124, 144
SgeI CNNG 7 cut(s) 59, 70, 76, 117, 138, 146, 185
SmiMI CAYNNNNRTG 1 cut(s) 163
Sse9I AATT 1 cut(s) 37
SspMI CTAG 2 cut(s) 126, 244
SstI GAGCTC 1 cut(s) 57
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 106
TaqII GACCGA 1 cut(s) 7
TasI AATT 1 cut(s) 37
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 74
XapI RAATTY 1 cut(s) 37
XspI CTAG 2 cut(s) 126, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.