Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0008147

Physical Location & Seq

Genomic Coordinates Reverse (-)

16805962 .. 16806606

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g14210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGATGGAAACCAATGTTGAATCTCCCTACCATCTTTCTCAACTTGCACACCCTCTCTTGAAAGCCTCTGGAAATGCAAGCATTGTCTTTGTGGCATCTATTGCCGGTGTGGTAGCTCTTCCAAAACTCTCTGCCTATGCAGCAACAAAAAGTGCGATTATCCAAATTTCAAAGAACTTGGCATGCGAATGGGCAAAGGACGGCATTCGTACTAATTCTGTGGCACCATGGGCTGTCAACACCGGAGTTAAAGTTGAATCTGACGGCCATTCTGATGATTTCAGACGCCTAATAGGTAGAACCCCCATCCGTCGCCTGGCACAGCCTAATGAAATCTCATCTCTAGTCACTTTCCTCTGCCTTCCTGCTGCTTCTTACATCAATGGACAAGTTATTAGCGTTGACGGTGGATTTACCGTTAGCGGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

144

Amino Acids

15.19

Weight (kDa)

8.66

Isoelectric Point (pI)

27.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008147)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21280
malus_domestica	MD07G1203600.v1.1
pyrus_communis	pycom04g12220 pycom11g07960 pycom11g07980 pycom12g14210
rosa_chinensis	RchiOBHm_Chr3g0465431 RchiOBHm_Chr3g0465481 RchiOBHm_Chr3g0491421 RchiOBHm_Chr4g0408491
rosa_laevigata	RLG00000024640
rosa_roxburghii	Rroxscaffold_6G00407890 Rroxscaffold_6G00415070
rosa_rugosa	Rorug03G0162700 Rorug03G0249300
rosa_samantha	Rh3AG185900 Rh3BG141900 Rh3BG213800 Rh3CG143000 Rh3CG210600 Rh3DG143000 Rh3DG209700 Rh4CG157900 Rh7AG357500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AciI	CCGC	1 cut(s)	423
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	286
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	4 cut(s)	20, 61, 171, 257
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	2 cut(s)	140, 368
ApoI	RAATTY	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	152, 355
BccI	CCATC	2 cut(s)	39, 314
BceAI	ACGGC	2 cut(s)	217, 280
BciT130I	CCWGG	1 cut(s)	317
BfaI	CTAG	2 cut(s)	344, 430
BisI	GCNGC	2 cut(s)	141, 369
BlsI	GCNGC	2 cut(s)	142, 370
Bme1390I	CCNGG	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	286
BsaJI	CCNNGG	1 cut(s)	227
BsaWI	WCCGGW	1 cut(s)	242
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse118I	RCCGGY	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	152, 355
BshFI	GGCC	1 cut(s)	267
BshNI	GGYRCC	1 cut(s)	223
BsiSI	CCGG	2 cut(s)	105, 243
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	267
Bsp19I	CCATGG	1 cut(s)	227
BspACI	CCGC	1 cut(s)	423
BspANI	GGCC	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	225
BspQI	GCTCTTC	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	227
BssNI	GRCGYC	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	407, 418
Bst6I	CTCTTC	1 cut(s)	123
BstACI	GRCGYC	1 cut(s)	286
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	79, 184
BstDSI	CCRYGG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 140, 230
BstNI	CCWGG	1 cut(s)	317
BstNSI	RCATGY	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	315
BstV1I	GCAGC	2 cut(s)	152, 355
BsuRI	GGCC	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	306
Cac8I	GCNNGC	2 cut(s)	79, 184
Cfr10I	RCCGGY	1 cut(s)	104
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	2 cut(s)	183, 228
CviJI	RGCY	5 cut(s)	65, 116, 233, 267, 325
CviKI_1	RGCY	5 cut(s)	65, 116, 233, 267, 325
CviQI	GTAC	1 cut(s)	210
EaeI	YGGCCR	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	2 cut(s)	186, 231
FaiI	YATR	3 cut(s)	138, 184, 229
FatI	CATG	2 cut(s)	182, 227
Fnu4HI	GCNGC	2 cut(s)	141, 369
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	2 cut(s)	141, 369
FspBI	CTAG	2 cut(s)	344, 430
GluI	GCNGC	2 cut(s)	141, 369
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	2 cut(s)	105, 243
HgaI	GACGC	1 cut(s)	294
Hin1I	GRCGYC	1 cut(s)	286
Hin1II	CATG	2 cut(s)	186, 231
HincII	GTYRAC	2 cut(s)	238, 403
HindII	GTYRAC	2 cut(s)	238, 403
HinfI	GANTC	2 cut(s)	20, 257
HpaII	CCGG	2 cut(s)	105, 243
Hpy166II	GTNNAC	2 cut(s)	238, 403
Hpy188I	TCNGA	3 cut(s)	262, 274, 284
Hpy188III	TCNNGA	2 cut(s)	58, 69
Hpy8I	GTNNAC	2 cut(s)	238, 403
Hpy99I	CGWCG	1 cut(s)	315
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	2 cut(s)	407, 418
HpyCH4V	TGCA	3 cut(s)	47, 77, 140
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 140, 230
Hsp92I	GRCGYC	1 cut(s)	286
Hsp92II	CATG	2 cut(s)	186, 231
LguI	GCTCTTC	1 cut(s)	123
LpnPI	CCDG	6 cut(s)	54, 118, 256, 302, 329, 378
Lsp1109I	GCAGC	2 cut(s)	152, 355
LweI	GCATC	1 cut(s)	104
MaeI	CTAG	2 cut(s)	344, 430
MaeIII	GTNAC	1 cut(s)	346
MboII	GAAGA	1 cut(s)	110
MluCI	AATT	2 cut(s)	165, 214
MnlI	CCTC	3 cut(s)	63, 76, 365
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	2 cut(s)	187, 273
MspI	CCGG	2 cut(s)	105, 243
MspR9I	CCNGG	1 cut(s)	317
Mva1269I	GAATGC	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	3 cut(s)	101, 140, 230
NcoI	CCATGG	1 cut(s)	227
NlaIII	CATG	2 cut(s)	186, 231
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	346
NspI	RCATGY	1 cut(s)	186
PaeI	GCATGC	1 cut(s)	186
PciSI	GCTCTTC	1 cut(s)	123
PctI	GAATGC	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	20, 257
PkrI	GCNGC	2 cut(s)	142, 370
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	225
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
RseI	CAYNNNNRTG	2 cut(s)	187, 273
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	2 cut(s)	141, 369
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	2 cut(s)	118, 298
SfaNI	GCATC	1 cut(s)	104
SmiMI	CAYNNNNRTG	2 cut(s)	187, 273
SphI	GCATGC	1 cut(s)	186
Sse9I	AATT	2 cut(s)	165, 214
SsiI	CCGC	1 cut(s)	423
SspMI	CTAG	2 cut(s)	344, 430
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	407, 418
TasI	AATT	2 cut(s)	165, 214
TfiI	GAWTC	2 cut(s)	20, 257
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	2 cut(s)	140, 368
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	1 cut(s)	299
XapI	RAATTY	1 cut(s)	165
XceI	RCATGY	1 cut(s)	186
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313
XspI	CTAG	2 cut(s)	344, 430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.