Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008147

Physical Location & Seq

Genomic Coordinates Reverse (-)

6112228 .. 6112422

Gene Structure 195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g07980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGCAGTTTCTCGGAAATGAAAAGAAATTGGAGATGATAAACTCTTGGTGCCCTTTAGGACGTCCTAGAAAGCCAGAGGAGGTGTCTTCCTTGGTAGCATTTCCATGCCTACCTGCAGCCTCTTACATTACTGGGCAAACTATTATCGTCGACGGCAGGGTGACCGTCACTGGCTTGCTCTTCCAAGGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815 GO:0044877 GO:0051276 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 ko05034 ko05202 ko05322 map00960 map01100 map01110 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone adh_short adh_short_C2

Protein Analysis

65

Amino Acids

6.98

Weight (kDa)

7.79

Isoelectric Point (pI)

19.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	5 - 52	1.8e-08	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008147)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21280
malus_domestica	MD07G1203600.v1.1
pyrus_communis	pycom04g12220 pycom11g07960 pycom11g07980 pycom12g14210
rosa_chinensis	RchiOBHm_Chr3g0465431 RchiOBHm_Chr3g0465481 RchiOBHm_Chr3g0491421 RchiOBHm_Chr4g0408491
rosa_laevigata	RLG00000024640
rosa_roxburghii	Rroxscaffold_6G00407890 Rroxscaffold_6G00415070
rosa_rugosa	Rorug03G0162700 Rorug03G0249300
rosa_samantha	Rh3AG185900 Rh3BG141900 Rh3BG213800 Rh3CG143000 Rh3CG210600 Rh3DG143000 Rh3DG209700 Rh4CG157900 Rh7AG357500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	64
Acc36I	ACCTGC	1 cut(s)	121
AccB1I	GGYRCC	1 cut(s)	48
AccI	GTMKAC	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	128
BceAI	ACGGC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	114
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	50
BmrI	ACTGGG	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	90, 184
Bse1I	ACTGG	2 cut(s)	136, 175
BseDI	CCNNGG	2 cut(s)	90, 184
BseNI	ACTGG	2 cut(s)	136, 175
BseRI	GAGGAG	1 cut(s)	92
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	128
BshNI	GGYRCC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	50
BspMAI	CTGCAG	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	121
BspQI	GCTCTTC	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	136, 175
BssECI	CCNNGG	2 cut(s)	90, 184
BssNI	GRCGYC	1 cut(s)	61
BssT1I	CCWWGG	2 cut(s)	90, 184
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	185
BstACI	GRCGYC	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	176
BstEII	GGTNACC	1 cut(s)	160
BstPI	GGTNACC	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	53
BstV1I	GCAGC	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	168
BveI	ACCTGC	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	176
CviAII	CATG	2 cut(s)	105, 192
CviJI	RGCY	3 cut(s)	73, 119, 174
CviKI_1	RGCY	3 cut(s)	73, 119, 174
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	2 cut(s)	90, 184
Eco91I	GGTNACC	1 cut(s)	160
EcoO65I	GGTNACC	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	90, 184
ErhI	CCWWGG	2 cut(s)	90, 184
FaeI	CATG	2 cut(s)	108, 195
FaiI	YATR	2 cut(s)	106, 193
FatI	CATG	2 cut(s)	104, 191
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	61
Hin1II	CATG	2 cut(s)	108, 195
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	14
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	2 cut(s)	152, 155
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	4, 116
HpySE526I	ACGT	1 cut(s)	61
Hsp92I	GRCGYC	1 cut(s)	61
Hsp92II	CATG	2 cut(s)	108, 195
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	5 cut(s)	87, 117, 126, 142, 156
Lsp1109I	GCAGC	1 cut(s)	128
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	2 cut(s)	160, 166
MboII	GAAGA	2 cut(s)	78, 172
MhlI	GDGCHC	1 cut(s)	53
MluCI	AATT	1 cut(s)	26
MnlI	CCTC	3 cut(s)	70, 73, 130
MslI	CAYNNNNRTG	1 cut(s)	103
NlaIII	CATG	2 cut(s)	108, 195
NlaIV	GGNNCC	1 cut(s)	50
NmuCI	GTSAC	2 cut(s)	160, 166
PciSI	GCTCTTC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	118
PspEI	GGTNACC	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	103
SalI	GTCGAC	1 cut(s)	149
SapI	GCTCTTC	1 cut(s)	185
SatI	GCNGC	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	53
SetI	ASST	3 cut(s)	64, 84, 115
SfcI	CTRYAG	1 cut(s)	114
SgrDI	CGTCGACG	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	103
Sse9I	AATT	1 cut(s)	26
SspMI	CTAG	1 cut(s)	66
StyI	CCWWGG	2 cut(s)	90, 184
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	150
TasI	AATT	1 cut(s)	26
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	2 cut(s)	160, 166
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	2 cut(s)	160, 166
TspDTI	ATGAA	1 cut(s)	33
TspRI	CASTG	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	1 cut(s)	66
ZraI	GACGTC	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.