pycom11g07960

Tropinone reductase homolog At1g07440-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0008147
Physical Location & Seq
Reverse (-)
6104805 .. 6105053
249 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07960.1

Sequence Viewer

Length: 249 bp
ATGTGTCCTACACATCCATTCTCTTTTCATCCATTATCTCTTCTATGCATGCAGTTTCTCCGAGATGAAAAGACTTTGGAGATGATAAACTCTCGGTGCCCTTTAGGACGTCCTGGAGAGCCAAAGGAGGTCTCTTCCTTGGTAGCATTTCTATGCCTACCTGCAGCCTCTTACATTACTGGACAAACTATTATCGTCGATGGTGGGGTGACCGTCAATGGCTTGCTCTTCCAAGGAACAAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00960 ko01100 ko01110 map00960 map01100 map01110
Pfam Domains
Protein Families
adh_short adh_short_C2

Protein Analysis

83

Amino Acids

8.94

Weight (kDa)

6.69

Isoelectric Point (pI)

28.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 21 - 71 2.2e-13 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 169
AccB1I GGYRCC 1 cut(s) 96
AcsI RAATTY 1 cut(s) 243
AcyI GRCGYC 1 cut(s) 109
AjnI CCWGG 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 243
AsuHPI GGTGA 1 cut(s) 220
BaeGI GKGCMC 1 cut(s) 101
BanI GGYRCC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 176
BccI CCATC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 136
BfmI CTRYAG 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 169
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 114
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 135
BsaHI GRCGYC 1 cut(s) 109
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 2 cut(s) 138, 232
Bse1I ACTGG 1 cut(s) 184
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 138, 232
BseGI GGATG 2 cut(s) 13, 28
BseNI ACTGG 1 cut(s) 184
BseSI GKGCMC 1 cut(s) 101
BseXI GCAGC 1 cut(s) 176
BshNI GGYRCC 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 136
Bso31I GGTCTC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 101
BspLI GGNNCC 1 cut(s) 98
BspMAI CTGCAG 1 cut(s) 166
BspMI ACCTGC 1 cut(s) 169
BspQI GCTCTTC 1 cut(s) 233
BspT107I GGYRCC 1 cut(s) 96
BspTNI GGTCTC 1 cut(s) 136
BsrI ACTGG 1 cut(s) 184
BssECI CCNNGG 2 cut(s) 138, 232
BssNI GRCGYC 1 cut(s) 109
BssT1I CCWWGG 2 cut(s) 138, 232
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 3 cut(s) 45, 139, 233
BstACI GRCGYC 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 50, 224
BstEII GGTNACC 1 cut(s) 208
BstF5I GGATG 2 cut(s) 13, 28
BstMAI GTCTC 1 cut(s) 136
BstNI CCWGG 1 cut(s) 114
BstNSI RCATGY 1 cut(s) 52
BstPI GGTNACC 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 162
BstSLI GKGCMC 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 176
BtsCI GGATG 2 cut(s) 13, 28
BveI ACCTGC 1 cut(s) 169
Cac8I GCNNGC 2 cut(s) 50, 224
CviAII CATG 1 cut(s) 49
CviJI RGCY 3 cut(s) 121, 167, 222
CviKI_1 RGCY 3 cut(s) 121, 167, 222
Eam1104I CTCTTC 3 cut(s) 45, 139, 233
EarI CTCTTC 3 cut(s) 45, 139, 233
Eco130I CCWWGG 2 cut(s) 138, 232
Eco31I GGTCTC 1 cut(s) 136
Eco91I GGTNACC 1 cut(s) 208
EcoO65I GGTNACC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 112
EcoT14I CCWWGG 2 cut(s) 138, 232
EcoT22I ATGCAT 1 cut(s) 50
ErhI CCWWGG 2 cut(s) 138, 232
FaeI CATG 1 cut(s) 52
FaiI YATR 3 cut(s) 46, 50, 154
FatI CATG 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 165
GsuI CTGGAG 1 cut(s) 135
Hin1I GRCGYC 1 cut(s) 109
Hin1II CATG 1 cut(s) 52
HphI GGTGA 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 62
Hpy99I CGWCG 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 3 cut(s) 48, 52, 164
HpySE526I ACGT 1 cut(s) 109
Hsp92I GRCGYC 1 cut(s) 109
Hsp92II CATG 1 cut(s) 52
LguI GCTCTTC 1 cut(s) 233
LpnPI CCDG 4 cut(s) 99, 126, 165, 174
Lsp1109I GCAGC 1 cut(s) 176
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 1 cut(s) 208
MboII GAAGA 3 cut(s) 32, 126, 220
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 1 cut(s) 243
MnlI CCTC 2 cut(s) 121, 178
Mph1103I ATGCAT 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 151
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 1 cut(s) 98
NmuCI GTSAC 1 cut(s) 208
NsiI ATGCAT 1 cut(s) 50
NspI RCATGY 1 cut(s) 52
PaeI GCATGC 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 112
PspEI GGTNACC 1 cut(s) 208
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 98
PstI CTGCAG 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 151
SapI GCTCTTC 1 cut(s) 233
SatI GCNGC 1 cut(s) 165
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 101
SetI ASST 3 cut(s) 112, 132, 163
SfcI CTRYAG 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 151
SphI GCATGC 1 cut(s) 52
Sse9I AATT 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 2 cut(s) 138, 232
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 198
TasI AATT 1 cut(s) 243
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 2 cut(s) 17, 81
XapI RAATTY 1 cut(s) 243
XceI RCATGY 1 cut(s) 52
ZraI GACGTC 1 cut(s) 110
Zsp2I ATGCAT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.