Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0008147

Physical Location & Seq

Genomic Coordinates Forward (+)

12189202 .. 12190028

Gene Structure 827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG143000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGAGAACCGGGGATTCAAAGTAAACAATGCACTGAGAAGTACTACAGAATGTCAGAATATGCATTGGAAGATTTGTCAAGCATGATGAGTACAAATGTTGAATCTCCCTACCATCTTTGTCAGCTTTCTTATCCTCTCTTGACGGCCTCAGGAAATGGAAGTATTGTGTTCGTCGCCTCCATTGCCGGTATAAAAGCTCTAACAAGACTATCTGCCTATGCAGCAACGAAAAGTGCCGTCATCCAAATTTCGAAGAATTTGGCATGTGAATGGGCAAAAGATGGCATTCGCAGAAACACTGTAACACCATGGGCAGTTAACACCGGCGTTAAAGTTGAAAATGATGATCATTCTGACGATTTCAGACAGCTAATAGGTCTAATTCCGATTCGCCGCATTGCTGAGCCTAATGAAATATCGTCACTGGTCACTTTTCTCTGCCTTCCTGCTGCTTCTTACATCAATGGACAAGTTGTTAGTGTTGACGGAGGATTTACAGTTAGCAGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

171

Amino Acids

18.59

Weight (kDa)

5.66

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	17 - 167	2e-34	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	17 - 116	2e-22	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008147)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21280
malus_domestica	MD07G1203600.v1.1
pyrus_communis	pycom04g12220 pycom11g07960 pycom11g07980 pycom12g14210
rosa_chinensis	RchiOBHm_Chr3g0465431 RchiOBHm_Chr3g0465481 RchiOBHm_Chr3g0491421 RchiOBHm_Chr4g0408491
rosa_laevigata	RLG00000024640
rosa_roxburghii	Rroxscaffold_6G00407890 Rroxscaffold_6G00415070
rosa_rugosa	Rorug03G0162700 Rorug03G0249300
rosa_samantha	Rh3AG185900 Rh3BG141900 Rh3BG213800 Rh3CG143000 Rh3CG210600 Rh3DG143000 Rh3DG209700 Rh4CG157900 Rh7AG357500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	397
AcsI	RAATTY	2 cut(s)	249, 259
AfaI	GTAC	2 cut(s)	44, 94
AgsI	TTSAA	3 cut(s)	20, 104, 341
AluBI	AGCT	3 cut(s)	127, 200, 373
AluI	AGCT	3 cut(s)	127, 200, 373
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	2 cut(s)	224, 452
ApoI	RAATTY	2 cut(s)	249, 259
AsuC2I	CCSGG	1 cut(s)	12
AsuII	TTCGAA	1 cut(s)	254
AxyI	CCTNAGG	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	236, 439
BccI	CCATC	2 cut(s)	123, 278
BceAI	ACGGC	2 cut(s)	162, 224
BclI	TGATCA	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	12
BfaI	CTAG	1 cut(s)	514
BfmI	CTRYAG	1 cut(s)	46
BisI	GCNGC	3 cut(s)	225, 397, 453
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	3 cut(s)	226, 398, 454
BmcAI	AGTACT	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	405
Bpu14I	TTCGAA	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	11, 311
Bse118I	RCCGGY	2 cut(s)	188, 326
Bse1I	ACTGG	1 cut(s)	432
Bse21I	CCTNAGG	1 cut(s)	151
Bse3DI	GCAATG	2 cut(s)	183, 399
BseDI	CCNNGG	2 cut(s)	11, 311
BseGI	GGATG	1 cut(s)	243
BseMI	GCAATG	2 cut(s)	183, 399
BseMII	CTCAG	3 cut(s)	27, 165, 396
BseNI	ACTGG	1 cut(s)	432
BseXI	GCAGC	2 cut(s)	236, 439
BshFI	GGCC	1 cut(s)	149
BsiSI	CCGG	3 cut(s)	11, 189, 327
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	149
Bsp119I	TTCGAA	1 cut(s)	254
Bsp143I	GATC	1 cut(s)	349
Bsp1720I	GCTNAGC	1 cut(s)	405
Bsp19I	CCATGG	1 cut(s)	311
BspACI	CCGC	1 cut(s)	397
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	3 cut(s)	28, 164, 397
BspT104I	TTCGAA	1 cut(s)	254
BsrDI	GCAATG	2 cut(s)	183, 399
BsrFI	RCCGGY	2 cut(s)	188, 326
BsrI	ACTGG	1 cut(s)	432
BssAI	RCCGGY	2 cut(s)	188, 326
BssECI	CCNNGG	2 cut(s)	11, 311
BssMI	GATC	1 cut(s)	349
BssT1I	CCWWGG	1 cut(s)	311
Bst4CI	ACNGT	2 cut(s)	304, 502
BstBI	TTCGAA	1 cut(s)	254
BstDEI	CTNAG	3 cut(s)	36, 151, 405
BstDSI	CCRYGG	1 cut(s)	311
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 224
BstNSI	RCATGY	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	10
BstSFI	CTRYAG	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	236, 439
Bsu36I	CCTNAGG	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	243
BtsIMutI	CAGTG	3 cut(s)	33, 300, 425
Cfr10I	RCCGGY	2 cut(s)	188, 326
Csp6I	GTAC	2 cut(s)	43, 93
CviAII	CATG	3 cut(s)	85, 267, 312
CviJI	RGCY	5 cut(s)	127, 149, 200, 373, 409
CviKI_1	RGCY	5 cut(s)	127, 149, 200, 373, 409
CviQI	GTAC	2 cut(s)	43, 93
DdeI	CTNAG	3 cut(s)	36, 151, 405
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	311
Eco81I	CCTNAGG	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	311
EcoT22I	ATGCAT	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	311
FaeI	CATG	3 cut(s)	88, 270, 315
FaiI	YATR	6 cut(s)	63, 86, 194, 222, 268, 313
FatI	CATG	3 cut(s)	84, 266, 311
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	3 cut(s)	225, 397, 453
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	3 cut(s)	225, 397, 453
FspBI	CTAG	1 cut(s)	514
GluI	GCNGC	3 cut(s)	225, 397, 453
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	3 cut(s)	11, 189, 327
Hin1II	CATG	3 cut(s)	88, 270, 315
HincII	GTYRAC	2 cut(s)	322, 487
HindII	GTYRAC	2 cut(s)	322, 487
HinfI	GANTC	3 cut(s)	16, 104, 391
HpaI	GTTAAC	1 cut(s)	322
HpaII	CCGG	3 cut(s)	11, 189, 327
Hpy166II	GTNNAC	3 cut(s)	26, 322, 487
Hpy188I	TCNGA	4 cut(s)	58, 358, 368, 390
Hpy188III	TCNNGA	2 cut(s)	142, 153
Hpy8I	GTNNAC	3 cut(s)	26, 322, 487
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	1 cut(s)	455
HpyCH4III	ACNGT	2 cut(s)	304, 502
HpyCH4V	TGCA	3 cut(s)	33, 65, 224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 224
HpyF3I	CTNAG	3 cut(s)	36, 151, 405
Hsp92II	CATG	3 cut(s)	88, 270, 315
Ksp22I	TGATCA	1 cut(s)	349
KspAI	GTTAAC	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	349
LpnPI	CCDG	6 cut(s)	24, 138, 202, 340, 413, 462
Lsp1109I	GCAGC	2 cut(s)	236, 439
MaeI	CTAG	1 cut(s)	514
MaeIII	GTNAC	3 cut(s)	304, 423, 430
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	2 cut(s)	83, 268
MluCI	AATT	3 cut(s)	249, 259, 384
MnlI	CCTC	4 cut(s)	147, 160, 190, 485
Mph1103I	ATGCAT	1 cut(s)	67
MseI	TTAA	2 cut(s)	321, 333
MslI	CAYNNNNRTG	1 cut(s)	271
MspI	CCGG	3 cut(s)	11, 189, 327
MspR9I	CCNGG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	185, 224
NciI	CCSGG	1 cut(s)	12
NcoI	CCATGG	1 cut(s)	311
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	3 cut(s)	88, 270, 315
NmuCI	GTSAC	2 cut(s)	423, 430
NsiI	ATGCAT	1 cut(s)	67
NspI	RCATGY	1 cut(s)	270
NspV	TTCGAA	1 cut(s)	254
PctI	GAATGC	1 cut(s)	288
PfeI	GAWTC	3 cut(s)	16, 104, 391
PkrI	GCNGC	3 cut(s)	226, 398, 454
RsaI	GTAC	2 cut(s)	44, 94
RsaNI	GTAC	2 cut(s)	43, 93
RseI	CAYNNNNRTG	1 cut(s)	271
SaqAI	TTAA	2 cut(s)	321, 333
SatI	GCNGC	3 cut(s)	225, 397, 453
Sau3AI	GATC	1 cut(s)	349
ScaI	AGTACT	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	12
SetI	ASST	4 cut(s)	129, 202, 375, 382
SfcI	CTRYAG	1 cut(s)	46
SfuI	TTCGAA	1 cut(s)	254
SgrAI	CRCCGGYG	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	271
Sse9I	AATT	3 cut(s)	249, 259, 384
SsiI	CCGC	1 cut(s)	397
SspMI	CTAG	1 cut(s)	514
StyD4I	CCNGG	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	311
TaaI	ACNGT	2 cut(s)	304, 502
TaqI	TCGA	1 cut(s)	254
TasI	AATT	3 cut(s)	249, 259, 384
TatI	WGTACW	2 cut(s)	42, 92
TauI	GCSGC	1 cut(s)	399
TfiI	GAWTC	3 cut(s)	16, 104, 391
Tru1I	TTAA	2 cut(s)	321, 333
Tru9I	TTAA	2 cut(s)	321, 333
TscAI	CASTG	3 cut(s)	40, 307, 432
TseFI	GTSAC	2 cut(s)	423, 430
TseI	GCWGC	2 cut(s)	224, 452
Tsp45I	GTSAC	2 cut(s)	423, 430
TspDTI	ATGAA	1 cut(s)	429
TspGWI	ACGGA	1 cut(s)	504
TspRI	CASTG	3 cut(s)	40, 307, 432
XapI	RAATTY	2 cut(s)	249, 259
XceI	RCATGY	1 cut(s)	270
XspI	CTAG	1 cut(s)	514
ZrmI	AGTACT	1 cut(s)	44
Zsp2I	ATGCAT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.