Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008147

Physical Location & Seq

Genomic Coordinates Reverse (-)

34706119 .. 34778253

Gene Structure 72135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG157900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTGGCTGCCGATATTTTCTCTATTCAATTTAGGAGCAATGAATCAATTGGCCAAAACTTTGGCTTGTGAGTGGGCAAAAGACAAGATTAGGATTAATAGTGTTGCACCTGCGGTCATCAGAACTCCTCTTGTTGAACCTATTTTGAATGAGGAAAAGTTTATGAAGGCTATGATCTCTCGAACCCCATTAGGACGTATAGGAGAGCCTGAAGAGGTGTCTGCCTTGGTGGCATTTCTATGCCTTCCTGCAGCCTCATACATAACAGGGCAGACTATTTGCATCGATGGAGGGCTAACAGTCAATGGTTTCCAGTTCCAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

108

Amino Acids

11.81

Weight (kDa)

6.19

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short_C2	PF13561	13 - 100	5.9e-28	Enoyl-(Acyl carrier protein) reductase
adh_short	PF00106	13 - 51	3.6e-06	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008147)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21280
malus_domestica	MD07G1203600.v1.1
pyrus_communis	pycom04g12220 pycom11g07960 pycom11g07980 pycom12g14210
rosa_chinensis	RchiOBHm_Chr3g0465431 RchiOBHm_Chr3g0465481 RchiOBHm_Chr3g0491421 RchiOBHm_Chr4g0408491
rosa_laevigata	RLG00000024640
rosa_roxburghii	Rroxscaffold_6G00407890 Rroxscaffold_6G00415070
rosa_rugosa	Rorug03G0162700 Rorug03G0249300
rosa_samantha	Rh3AG185900 Rh3BG141900 Rh3BG213800 Rh3CG143000 Rh3CG210600 Rh3DG143000 Rh3DG209700 Rh4CG157900 Rh7AG357500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	118
Acc36I	ACCTGC	1 cut(s)	118
AciI	CCGC	1 cut(s)	113
AcoI	YGGCCR	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	231
AgsI	TTSAA	3 cut(s)	28, 137, 148
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	2 cut(s)	7, 251
AseI	ATTAAT	1 cut(s)	96
BalI	TGGCCA	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	118
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	2 cut(s)	8, 252
BlsI	GCNGC	2 cut(s)	9, 253
BmsI	GCATC	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	313
Bse3DI	GCAATG	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	225
BseMI	GCAATG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	263
BshFI	GGCC	1 cut(s)	53
BshVI	ATCGAT	1 cut(s)	285
BsnI	GGCC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	1 cut(s)	53
BspDI	ATCGAT	1 cut(s)	285
BspMAI	CTGCAG	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	1 cut(s)	207
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	263
BstXI	CCANNNNNNTGG	1 cut(s)	61
Bsu15I	ATCGAT	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	53
BsuTUI	ATCGAT	1 cut(s)	285
BveI	ACCTGC	1 cut(s)	118
ClaI	ATCGAT	1 cut(s)	285
CviJI	RGCY	7 cut(s)	7, 53, 65, 170, 208, 254, 295
CviKI_1	RGCY	7 cut(s)	7, 53, 65, 170, 208, 254, 295
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaiI	YATR	7 cut(s)	164, 173, 200, 241, 259, 263, 325
Fnu4HI	GCNGC	2 cut(s)	8, 252
Fsp4HI	GCNGC	2 cut(s)	8, 252
GluI	GCNGC	2 cut(s)	8, 252
HaeIII	GGCC	1 cut(s)	53
HinfI	GANTC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	122
Hpy188III	TCNNGA	1 cut(s)	180
HpyAV	CCTTC	2 cut(s)	160, 254
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	3 cut(s)	107, 251, 282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	4 cut(s)	123, 222, 252, 261
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	1 cut(s)	291
MaeII	ACGT	1 cut(s)	196
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	1 cut(s)	224
MfeI	CAATTG	1 cut(s)	47
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	2 cut(s)	28, 47
MluNI	TGGCCA	1 cut(s)	53
MnlI	CCTC	5 cut(s)	138, 145, 208, 265, 284
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	238
Msp20I	TGGCCA	1 cut(s)	53
MunI	CAATTG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeII	GATC	1 cut(s)	174
PaqCI	CACCTGC	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	2 cut(s)	9, 253
PshBI	ATTAAT	1 cut(s)	96
PstI	CTGCAG	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	2 cut(s)	8, 252
Sau3AI	GATC	1 cut(s)	174
SetI	ASST	4 cut(s)	112, 142, 199, 219
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	249
SgeI	CNNG	9 cut(s)	78, 97, 122, 143, 192, 221, 238, 260, 279
SmiMI	CAYNNNNRTG	1 cut(s)	238
Sse9I	AATT	2 cut(s)	28, 47
SsiI	CCGC	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	181, 285
TasI	AATT	2 cut(s)	28, 47
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseI	GCWGC	2 cut(s)	7, 251
TspDTI	ATGAA	2 cut(s)	56, 179
VspI	ATTAAT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.