FvH4_6g26250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014299
Physical Location & Seq
Forward (+)
20085868 .. 20086651
784 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g26250.t1

Sequence Viewer

Length: 576 bp
ATGGTTCTGAAGCTCAAGTTGACCAGTCCAGCCAAGTTCTACGGCAGCAGCCTCCCACGCCCTCGGATCTACACCGACGTCAAGTTCAATGAGGAGCGGGTCGACCCGCCTGTGCCCGTCCTGGATCCGCTTCTCGCCTGGGCCAACGAGGCCCACTGGTCAATGGGCGGCCTCAGCTTCAAGCGCCTCCGCTTCCAGGGCCGGATCGAAGGCAACGTCGGCAAGCTCCGCGCCGAGCGGCACAAGAGGGCTTCTTCAAATTCGCCTCCTCCGGCTCCGGTTGCGACCAAGCGCAGCAGATTCATGGCCTTGATTGATGAAGACGGCGATGAGGAGGCTGTGAGGGGGAAGCGGCTTGCCGTCGAGTTCGACAGGGTGGCTGCGGAGGAGGAGGAGGAGGAGGAGGAGGCCGTGGCTTCAAGGACTCGGAGCCGGAAATTGGAAGTGGAGGATGAGACTGTGATGCAAGAGGTGGCAAAGGATGCAAGTAAGTTGAGTTTGAACAAGAGGAAAAGCAAGGGACCAAGGACATCACCCAGATTGGCAAACCGTCGCTCAAGCCTTGATTTGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.58

Weight (kDa)

9.61

Isoelectric Point (pI)

71.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52270 AT4G28310
fragaria_vesca FvH4_6g26250
malus_domestica MD17G1239900.v1.1
prunus_persica Prupe.3G132500_v2.0.a1
pyrus_communis pycom09g16430 pycom17g24320
rosa_chinensis RchiOBHm_Chr2g0126621
rosa_laevigata RLG00000018914
rosa_multiflora Rmu_sc0002369.1_g000021 Rmu_sc0007463.1_g000014
rosa_roxburghii Rroxscaffold_2G00117070
rosa_rugosa Rorug02G0264000
rosa_samantha Rh2AG321000 Rh2BG329300 Rh2DG348700
rosa_wichuraiana Rw2G026010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
AccBSI CCGCTC 2 cut(s) 97, 238
AccI GTMKAC 1 cut(s) 102
AccII CGCG 1 cut(s) 231
AciI CCGC 9 cut(s) 97, 107, 128, 168, 190, 229, 238, 352, 383
AclWI GGATC 4 cut(s) 74, 119, 132, 212
AcsI RAATTY 1 cut(s) 259
AcuI CTGAAG 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 196, 439
AgsI TTSAA 5 cut(s) 88, 181, 258, 420, 502
AjnI CCWGG 3 cut(s) 120, 137, 195
AluBI AGCT 3 cut(s) 13, 177, 226
AluI AGCT 3 cut(s) 13, 177, 226
Alw26I GTCTC 1 cut(s) 449
AlwI GGATC 4 cut(s) 74, 119, 132, 212
AoxI GGCC 6 cut(s) 141, 150, 169, 199, 306, 408
ApeKI GCWGC 4 cut(s) 45, 48, 294, 380
ApoI RAATTY 1 cut(s) 259
ArsI GACNNNNNNTTYG 2 cut(s) 201, 233
AspLEI GCGC 3 cut(s) 186, 233, 294
AspS9I GGNCC 4 cut(s) 141, 151, 199, 521
AsuHPI GGTGA 1 cut(s) 525
AvaII GGWCC 1 cut(s) 521
BaeGI GKGCMC 1 cut(s) 117
BamHI GGATCC 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 327
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 4 cut(s) 57, 60, 306, 367
BceAI ACGGC 4 cut(s) 58, 340, 344, 395
BciT130I CCWGG 3 cut(s) 122, 139, 197
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 1 cut(s) 574
BfoI RGCGCY 1 cut(s) 187
BglI GCCNNNNNGGC 1 cut(s) 149
BisI GCNGC 7 cut(s) 46, 49, 169, 239, 295, 353, 381
BlsI GCNGC 7 cut(s) 47, 50, 170, 240, 296, 354, 382
Bme1390I CCNGG 3 cut(s) 122, 139, 197
Bme18I GGWCC 1 cut(s) 521
BmgT120I GGNCC 4 cut(s) 141, 151, 199, 521
BmiI GGNNCC 4 cut(s) 126, 276, 431, 522
BmrFI CCNGG 3 cut(s) 122, 139, 197
BmsI GCATC 2 cut(s) 453, 472
BpiI GAAGAC 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 541
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 5 cut(s) 62, 138, 196, 411, 524
BsaWI WCCGGW 1 cut(s) 277
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 439
Bse1I ACTGG 2 cut(s) 24, 161
BseBI CCWGG 3 cut(s) 122, 139, 197
BseDI CCNNGG 5 cut(s) 62, 138, 196, 411, 524
BseGI GGATG 2 cut(s) 457, 487
BseLI CCNNNNNNNGG 2 cut(s) 196, 439
BseMII CTCAG 1 cut(s) 187
BseNI ACTGG 2 cut(s) 24, 161
BseSI GKGCMC 1 cut(s) 117
BseXI GCAGC 4 cut(s) 57, 60, 306, 367
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 6 cut(s) 143, 152, 171, 201, 308, 410
BsiSI CCGG 4 cut(s) 202, 272, 278, 433
BslFI GGGAC 1 cut(s) 534
BslI CCNNNNNNNGG 2 cut(s) 196, 439
BsmAI GTCTC 1 cut(s) 449
BsmFI GGGAC 1 cut(s) 534
BsnI GGCC 6 cut(s) 143, 152, 171, 201, 308, 410
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 4 cut(s) 66, 124, 204, 570
BspACI CCGC 9 cut(s) 97, 107, 128, 168, 190, 229, 238, 352, 383
BspANI GGCC 6 cut(s) 143, 152, 171, 201, 308, 410
BspCNI CTCAG 1 cut(s) 186
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 4 cut(s) 126, 276, 431, 522
BspPI GGATC 4 cut(s) 74, 119, 132, 212
BsrBI CCGCTC 2 cut(s) 97, 238
BsrI ACTGG 2 cut(s) 24, 161
BssECI CCNNGG 5 cut(s) 62, 138, 196, 411, 524
BssMI GATC 4 cut(s) 66, 124, 204, 570
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 524
Bst2UI CCWGG 3 cut(s) 122, 139, 197
Bst4CI ACNGT 2 cut(s) 460, 551
BstACI GRCGYC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 482
BstC8I GCNNGC 2 cut(s) 224, 357
BstDEI CTNAG 1 cut(s) 173
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 2 cut(s) 457, 487
BstFNI CGCG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 3 cut(s) 186, 233, 294
BstKTI GATC 4 cut(s) 69, 127, 207, 573
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 4 cut(s) 66, 124, 204, 570
BstMWI GCNNNNNNNGC 9 cut(s) 57, 149, 174, 183, 198, 219, 228, 281, 482
BstNI CCWGG 3 cut(s) 122, 139, 197
BstSCI CCNGG 3 cut(s) 120, 137, 195
BstSLI GKGCMC 1 cut(s) 117
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 4 cut(s) 57, 60, 306, 367
BstV2I GAAGAC 1 cut(s) 327
BstX2I RGATCY 2 cut(s) 66, 124
BstYI RGATCY 2 cut(s) 66, 124
BsuRI GGCC 6 cut(s) 143, 152, 171, 201, 308, 410
BtgI CCRYGG 1 cut(s) 411
BtgZI GCGATG 1 cut(s) 342
BtsCI GGATG 2 cut(s) 457, 487
BtsIMutI CAGTG 1 cut(s) 154
Cac8I GCNNGC 2 cut(s) 224, 357
CfoI GCGC 3 cut(s) 186, 233, 294
Cfr13I GGNCC 4 cut(s) 141, 151, 199, 521
CviAII CATG 1 cut(s) 304
DdeI CTNAG 1 cut(s) 173
DpnI GATC 4 cut(s) 68, 126, 206, 572
DpnII GATC 4 cut(s) 66, 124, 204, 570
Eco130I CCWWGG 1 cut(s) 524
Eco47I GGWCC 1 cut(s) 521
Eco57I CTGAAG 1 cut(s) 29
EcoRII CCWGG 3 cut(s) 120, 137, 195
EcoT14I CCWWGG 1 cut(s) 524
ErhI CCWWGG 1 cut(s) 524
FaeI CATG 1 cut(s) 307
FaiI YATR 1 cut(s) 305
FaqI GGGAC 1 cut(s) 534
FatI CATG 1 cut(s) 303
FauI CCCGC 2 cut(s) 90, 114
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 7 cut(s) 46, 49, 169, 239, 295, 353, 381
FokI GGATG 2 cut(s) 464, 494
Fsp4HI GCNGC 7 cut(s) 46, 49, 169, 239, 295, 353, 381
FspBI CTAG 1 cut(s) 574
GlaI GCGC 3 cut(s) 185, 232, 293
GluI GCNGC 7 cut(s) 46, 49, 169, 239, 295, 353, 381
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 6 cut(s) 143, 152, 171, 201, 308, 410
HapII CCGG 4 cut(s) 202, 272, 278, 433
HhaI GCGC 3 cut(s) 186, 233, 294
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 1 cut(s) 307
Hin6I GCGC 3 cut(s) 184, 231, 292
HinP1I GCGC 3 cut(s) 184, 231, 292
HincII GTYRAC 2 cut(s) 21, 103
HindII GTYRAC 2 cut(s) 21, 103
HinfI GANTC 2 cut(s) 300, 424
HpaII CCGG 4 cut(s) 202, 272, 278, 433
HphI GGTGA 1 cut(s) 525
Hpy166II GTNNAC 2 cut(s) 21, 103
Hpy188I TCNGA 3 cut(s) 9, 66, 429
Hpy8I GTNNAC 2 cut(s) 21, 103
Hpy99I CGWCG 4 cut(s) 80, 221, 365, 555
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 2 cut(s) 460, 551
HpyCH4IV ACGT 2 cut(s) 78, 216
HpyCH4V TGCA 2 cut(s) 466, 485
HpyF10VI GCNNNNNNNGC 9 cut(s) 57, 149, 174, 183, 198, 219, 228, 281, 482
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 2 cut(s) 78, 216
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 1 cut(s) 307
HspAI GCGC 3 cut(s) 184, 231, 292
Kzo9I GATC 4 cut(s) 66, 124, 204, 570
LmnI GCTCC 4 cut(s) 94, 231, 280, 429
Lsp1109I GCAGC 4 cut(s) 57, 60, 306, 367
LweI GCATC 2 cut(s) 453, 472
MaeI CTAG 1 cut(s) 574
MaeII ACGT 2 cut(s) 78, 216
MalI GATC 4 cut(s) 68, 126, 206, 572
MbiI CCGCTC 2 cut(s) 97, 238
MboI GATC 4 cut(s) 66, 124, 204, 570
MboII GAAGA 2 cut(s) 246, 332
MflI RGATCY 2 cut(s) 66, 124
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 2 cut(s) 259, 437
MlyI GAGTC 1 cut(s) 418
MspI CCGG 4 cut(s) 202, 272, 278, 433
MspR9I CCNGG 3 cut(s) 122, 139, 197
MvaI CCWGG 3 cut(s) 122, 139, 197
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 9 cut(s) 57, 149, 174, 183, 198, 219, 228, 281, 482
NdeII GATC 4 cut(s) 66, 124, 204, 570
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 4 cut(s) 126, 276, 431, 522
NmeAIII GCCGAG 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PfeI GAWTC 1 cut(s) 300
PfoI TCCNGGA 1 cut(s) 120
PkrI GCNGC 7 cut(s) 47, 50, 170, 240, 296, 354, 382
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
Psp6I CCWGG 3 cut(s) 120, 137, 195
PspGI CCWGG 3 cut(s) 120, 137, 195
PspN4I GGNNCC 4 cut(s) 126, 276, 431, 522
PspPI GGNCC 4 cut(s) 141, 151, 199, 521
PsuI RGATCY 2 cut(s) 66, 124
SalI GTCGAC 1 cut(s) 101
SatI GCNGC 7 cut(s) 46, 49, 169, 239, 295, 353, 381
Sau3AI GATC 4 cut(s) 66, 124, 204, 570
Sau96I GGNCC 4 cut(s) 141, 151, 199, 521
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 3 cut(s) 122, 139, 197
SduI GDGCHC 1 cut(s) 117
SetI ASST 6 cut(s) 15, 81, 179, 219, 228, 474
SfaNI GCATC 2 cut(s) 453, 472
SfiI GGCCNNNNNGGCC 1 cut(s) 149
SinI GGWCC 1 cut(s) 521
SmlI CTYRAG 2 cut(s) 14, 556
SmoI CTYRAG 2 cut(s) 14, 556
Sse9I AATT 2 cut(s) 259, 437
SsiI CCGC 9 cut(s) 97, 107, 128, 168, 190, 229, 238, 352, 383
SspMI CTAG 1 cut(s) 574
StyD4I CCNGG 3 cut(s) 120, 137, 195
StyI CCWWGG 1 cut(s) 524
TaaI ACNGT 2 cut(s) 460, 551
TaiI ACGT 2 cut(s) 81, 219
TaqI TCGA 4 cut(s) 102, 207, 363, 369
TasI AATT 2 cut(s) 259, 437
TauI GCSGC 3 cut(s) 171, 241, 355
TfiI GAWTC 1 cut(s) 300
TscAI CASTG 1 cut(s) 161
TseI GCWGC 4 cut(s) 45, 48, 294, 380
TspDTI ATGAA 2 cut(s) 292, 333
TspRI CASTG 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 521
XapI RAATTY 1 cut(s) 259
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 1 cut(s) 574
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.