Rmu_sc0007463.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007463.1
OG0014299
Physical Location & Seq
Forward (+)
88807 .. 89442
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007463.1_g000014.1.cds

Sequence Viewer

Length: 636 bp
atggttctaaagctcaagttagccactccagccaagttctacggcagcagcctcccgcgccctcggatctacacggacgtcaagttcaatgacgaacgggtcgacccgcctgtagccgtcatggatccgtttctggcctgggccaacgaggcccactggtccatgggcggcctcagcttcaagcgcctccgcctccagggccggatcgaaggccacgtcggcaagctccgcgccgagcgggaaaagaccgaggacaggaagcaaaagagcaagagggcttcttccgattcgcctccttcggctccgattgcgcccaagcgccggagattcctggccttgattgatgaagatgaagatgaggaggaggaggaggaagatctggagttggtgagggggaagaggcttgtgaagaagctggccgatgagtttgatagggtggctgatgcggaggaggagacggtggcttcaaggactcggagccggaaattggaagtggatgacgggattgagacggagactcagactgtgatgcaggtggcaaaggaggtaaataagttgagcttgaagggcaaaaggttgaagaagcggaagagcaagggacccaggacttcgcctagattggcaaaccgtagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

24.14

Weight (kDa)

9.66

Isoelectric Point (pI)

59.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52270 AT4G28310
fragaria_vesca FvH4_6g26250
malus_domestica MD17G1239900.v1.1
prunus_persica Prupe.3G132500_v2.0.a1
pyrus_communis pycom09g16430 pycom17g24320
rosa_chinensis RchiOBHm_Chr2g0126621
rosa_laevigata RLG00000018914
rosa_multiflora Rmu_sc0002369.1_g000021 Rmu_sc0007463.1_g000014
rosa_roxburghii Rroxscaffold_2G00117070
rosa_rugosa Rorug02G0264000
rosa_samantha Rh2AG321000 Rh2BG329300 Rh2DG348700
rosa_wichuraiana Rw2G026010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 523
AasI GACNNNNNNGTC 1 cut(s) 98
AatII GACGTC 1 cut(s) 81
Acc36I ACCTGC 1 cut(s) 523
AccBSI CCGCTC 1 cut(s) 238
AccI GTMKAC 1 cut(s) 102
AccII CGCG 2 cut(s) 58, 231
AciI CCGC 8 cut(s) 56, 107, 168, 190, 229, 238, 446, 586
AclWI GGATC 4 cut(s) 74, 119, 132, 212
AcoI YGGCCR 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 4 cut(s) 196, 255, 321, 487
AgsI TTSAA 5 cut(s) 88, 181, 468, 565, 580
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 4 cut(s) 137, 195, 330, 602
AloI GAACNNNNNNTCC 2 cut(s) 68, 100
AluBI AGCT 6 cut(s) 13, 177, 226, 415, 561, 633
AluI AGCT 6 cut(s) 13, 177, 226, 415, 561, 633
Alw26I GTCTC 3 cut(s) 449, 503, 509
AlwI GGATC 4 cut(s) 74, 119, 132, 212
AoxI GGCC 8 cut(s) 135, 141, 150, 169, 199, 211, 333, 417
ApeKI GCWGC 2 cut(s) 45, 48
ArsI GACNNNNNNTTYG 2 cut(s) 201, 233
AspLEI GCGC 5 cut(s) 60, 186, 233, 313, 321
AspS9I GGNCC 5 cut(s) 141, 151, 159, 199, 599
AsuHPI GGTGA 1 cut(s) 400
AvaII GGWCC 2 cut(s) 159, 599
BamHI GGATCC 1 cut(s) 124
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 2 cut(s) 57, 60
BceAI ACGGC 2 cut(s) 58, 101
BciT130I CCWGG 4 cut(s) 139, 197, 332, 604
BcoDI GTCTC 3 cut(s) 449, 503, 509
BfaI CTAG 1 cut(s) 615
BfmI CTRYAG 1 cut(s) 111
BfoI RGCGCY 2 cut(s) 187, 322
BfuAI ACCTGC 1 cut(s) 523
BglI GCCNNNNNGGC 3 cut(s) 149, 198, 219
BglII AGATCT 1 cut(s) 376
BisI GCNGC 3 cut(s) 46, 49, 169
BlsI GCNGC 3 cut(s) 47, 50, 170
Bme1390I CCNGG 4 cut(s) 139, 197, 332, 604
Bme18I GGWCC 2 cut(s) 159, 599
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 5 cut(s) 141, 151, 159, 199, 599
BmiI GGNNCC 5 cut(s) 126, 303, 479, 600, 601
BmrFI CCNGG 4 cut(s) 139, 197, 332, 604
BmsI GCATC 2 cut(s) 433, 519
BpmI CTGGAG 3 cut(s) 12, 179, 401
Bpu10I CCTNAGC 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 6 cut(s) 62, 138, 162, 196, 249, 602
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 255, 321, 487
Bse1I ACTGG 1 cut(s) 161
BseBI CCWGG 4 cut(s) 139, 197, 332, 604
BseDI CCNNGG 6 cut(s) 62, 138, 162, 196, 249, 602
BseGI GGATG 1 cut(s) 502
BseLI CCNNNNNNNGG 4 cut(s) 196, 255, 321, 487
BseMII CTCAG 2 cut(s) 187, 533
BseNI ACTGG 1 cut(s) 161
BseRI GAGGAG 6 cut(s) 374, 377, 380, 383, 464, 467
BseXI GCAGC 2 cut(s) 57, 60
Bsh1236I CGCG 2 cut(s) 58, 231
BshFI GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 419
BsiSI CCGG 3 cut(s) 202, 322, 481
BslFI GGGAC 1 cut(s) 612
BslI CCNNNNNNNGG 4 cut(s) 196, 255, 321, 487
BsmAI GTCTC 3 cut(s) 449, 503, 509
BsmBI CGTCTC 2 cut(s) 449, 503
BsmFI GGGAC 1 cut(s) 612
BsnI GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 419
Bsp143I GATC 4 cut(s) 66, 124, 204, 376
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 8 cut(s) 56, 107, 168, 190, 229, 238, 446, 586
BspANI GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 419
BspCNI CTCAG 2 cut(s) 186, 532
BspFNI CGCG 2 cut(s) 58, 231
BspLI GGNNCC 5 cut(s) 126, 303, 479, 600, 601
BspMI ACCTGC 1 cut(s) 523
BspPI GGATC 4 cut(s) 74, 119, 132, 212
BspQI GCTCTTC 1 cut(s) 584
BsrBI CCGCTC 1 cut(s) 238
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 6 cut(s) 62, 138, 162, 196, 249, 602
BssMI GATC 4 cut(s) 66, 124, 204, 376
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 4 cut(s) 139, 197, 332, 604
Bst4CI ACNGT 3 cut(s) 460, 526, 629
Bst6I CTCTTC 2 cut(s) 392, 584
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 224, 417
BstDEI CTNAG 2 cut(s) 173, 519
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 502
BstFNI CGCG 2 cut(s) 58, 231
BstH2I RGCGCY 2 cut(s) 187, 322
BstHHI GCGC 5 cut(s) 60, 186, 233, 313, 321
BstKTI GATC 4 cut(s) 69, 127, 207, 379
BstMAI GTCTC 3 cut(s) 449, 503, 509
BstMBI GATC 4 cut(s) 66, 124, 204, 376
BstNI CCWGG 4 cut(s) 139, 197, 332, 604
BstSCI CCNGG 4 cut(s) 137, 195, 330, 602
BstSFI CTRYAG 1 cut(s) 111
BstUI CGCG 2 cut(s) 58, 231
BstV1I GCAGC 2 cut(s) 57, 60
BstX2I RGATCY 3 cut(s) 66, 124, 376
BstYI RGATCY 3 cut(s) 66, 124, 376
BsuRI GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 419
BtgI CCRYGG 1 cut(s) 162
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 1 cut(s) 502
BtsIMutI CAGTG 1 cut(s) 154
BveI ACCTGC 1 cut(s) 523
Cac8I GCNNGC 2 cut(s) 224, 417
CfoI GCGC 5 cut(s) 60, 186, 233, 313, 321
Cfr13I GGNCC 5 cut(s) 141, 151, 159, 199, 599
CviAII CATG 2 cut(s) 121, 163
DdeI CTNAG 2 cut(s) 173, 519
DpnI GATC 4 cut(s) 68, 126, 206, 378
DpnII GATC 4 cut(s) 66, 124, 204, 376
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 417
Eam1104I CTCTTC 2 cut(s) 392, 584
EarI CTCTTC 2 cut(s) 392, 584
EciI GGCGGA 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 2 cut(s) 159, 599
EcoO109I RGGNCCY 1 cut(s) 599
EcoRII CCWGG 4 cut(s) 137, 195, 330, 602
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
Esp3I CGTCTC 2 cut(s) 449, 503
FaeI CATG 2 cut(s) 124, 166
FaiI YATR 2 cut(s) 122, 164
FalI AAGNNNNNCTT 2 cut(s) 545, 577
FaqI GGGAC 1 cut(s) 612
FatI CATG 2 cut(s) 120, 162
FauI CCCGC 3 cut(s) 63, 114, 231
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 46, 49, 169
FokI GGATG 1 cut(s) 509
Fsp4HI GCNGC 3 cut(s) 46, 49, 169
FspBI CTAG 1 cut(s) 615
GlaI GCGC 5 cut(s) 59, 185, 232, 312, 320
GluI GCNGC 3 cut(s) 46, 49, 169
GsuI CTGGAG 3 cut(s) 12, 179, 401
HaeII RGCGCY 2 cut(s) 187, 322
HaeIII GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 419
HapII CCGG 3 cut(s) 202, 322, 481
HhaI GCGC 5 cut(s) 60, 186, 233, 313, 321
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 124, 166
Hin6I GCGC 5 cut(s) 58, 184, 231, 311, 319
HinP1I GCGC 5 cut(s) 58, 184, 231, 311, 319
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 4 cut(s) 287, 327, 472, 517
HpaII CCGG 3 cut(s) 202, 322, 481
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 5 cut(s) 66, 286, 306, 477, 522
Hpy188III TCNNGA 1 cut(s) 380
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 3 cut(s) 203, 306, 559
HpyCH4III ACNGT 3 cut(s) 460, 526, 629
HpyCH4IV ACGT 2 cut(s) 78, 216
HpyCH4V TGCA 1 cut(s) 532
HpyF3I CTNAG 2 cut(s) 173, 519
HpySE526I ACGT 2 cut(s) 78, 216
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 124, 166
HspAI GCGC 5 cut(s) 58, 184, 231, 311, 319
KflI GGGWCCC 1 cut(s) 599
Kzo9I GATC 4 cut(s) 66, 124, 204, 376
LguI GCTCTTC 1 cut(s) 584
LmnI GCTCC 3 cut(s) 231, 307, 477
Lsp1109I GCAGC 2 cut(s) 57, 60
LweI GCATC 2 cut(s) 433, 519
MaeI CTAG 1 cut(s) 615
MaeII ACGT 2 cut(s) 78, 216
MalI GATC 4 cut(s) 68, 126, 206, 378
MbiI CCGCTC 1 cut(s) 238
MboI GATC 4 cut(s) 66, 124, 204, 376
MboII GAAGA 8 cut(s) 273, 359, 365, 386, 409, 421, 592, 601
MflI RGATCY 3 cut(s) 66, 124, 376
MluCI AATT 1 cut(s) 485
MlyI GAGTC 2 cut(s) 466, 511
MspI CCGG 3 cut(s) 202, 322, 481
MspR9I CCNGG 4 cut(s) 139, 197, 332, 604
MvaI CCWGG 4 cut(s) 139, 197, 332, 604
MvnI CGCG 2 cut(s) 58, 231
NcoI CCATGG 1 cut(s) 162
NdeII GATC 4 cut(s) 66, 124, 204, 376
NlaIII CATG 2 cut(s) 124, 166
NlaIV GGNNCC 5 cut(s) 126, 303, 479, 600, 601
NmeAIII GCCGAG 1 cut(s) 259
PaqCI CACCTGC 1 cut(s) 523
PciSI GCTCTTC 1 cut(s) 584
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 213
PfeI GAWTC 2 cut(s) 287, 327
PkrI GCNGC 3 cut(s) 47, 50, 170
PleI GAGTC 2 cut(s) 466, 511
PpsI GAGTC 2 cut(s) 466, 511
PpuMI RGGWCCY 1 cut(s) 599
Psp5II RGGWCCY 1 cut(s) 599
Psp6I CCWGG 4 cut(s) 137, 195, 330, 602
PspGI CCWGG 4 cut(s) 137, 195, 330, 602
PspN4I GGNNCC 5 cut(s) 126, 303, 479, 600, 601
PspPI GGNCC 5 cut(s) 141, 151, 159, 199, 599
PspPPI RGGWCCY 1 cut(s) 599
PsuI RGATCY 3 cut(s) 66, 124, 376
SalI GTCGAC 1 cut(s) 101
SapI GCTCTTC 1 cut(s) 584
SatI GCNGC 3 cut(s) 46, 49, 169
Sau3AI GATC 4 cut(s) 66, 124, 204, 376
Sau96I GGNCC 5 cut(s) 141, 151, 159, 199, 599
SchI GAGTC 2 cut(s) 466, 511
ScrFI CCNGG 4 cut(s) 139, 197, 332, 604
SfaNI GCATC 2 cut(s) 433, 519
SfcI CTRYAG 1 cut(s) 111
SfiI GGCCNNNNNGGCC 1 cut(s) 149
SinI GGWCC 2 cut(s) 159, 599
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 1 cut(s) 485
SsiI CCGC 8 cut(s) 56, 107, 168, 190, 229, 238, 446, 586
SspMI CTAG 1 cut(s) 615
StyD4I CCNGG 4 cut(s) 137, 195, 330, 602
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 3 cut(s) 460, 526, 629
TaiI ACGT 2 cut(s) 81, 219
TaqI TCGA 2 cut(s) 102, 207
TaqII GACCGA 1 cut(s) 263
TasI AATT 1 cut(s) 485
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 2 cut(s) 287, 327
TscAI CASTG 1 cut(s) 161
TseI GCWGC 2 cut(s) 45, 48
TspDTI ATGAA 2 cut(s) 360, 366
TspGWI ACGGA 3 cut(s) 89, 117, 527
TspRI CASTG 1 cut(s) 161
VpaK11BI GGWCC 2 cut(s) 159, 599
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 1 cut(s) 615
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.