RchiOBHm_Chr2g0126621

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014299
Physical Location & Seq
Forward (+)
41169687 .. 41170686
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49860

Sequence Viewer

Length: 786 bp
ATGAAATGTTGGTGGCGCCAAAATGGTGGCGCCAAACGAAAACTTCCCGCCCCTCACTGCCCGCCACTCCTCCTTCTTTATAACACAACCCCTTCCCCTTACCCCTCACAATACCAATTGCTCCTATTCTCTACTCCCAAAGCCGCCATGGTTCTAAAGCTCAAGTTAGCCACTCCAGCCAAGTTCTACGGCAGCAGCCTCCCGCGCCCTCGGATCTACACGGACGTCAAGTTCAATGACGAACGGGTCGACCCGCCTGTAGCCGTCATGGATCCGTTTCTGGCCTGGGCCAACGAGGCCCACTGGTCCATGGGCGGCCTCAGCTTCAAGCGCCTCCGCCTCCAGGGCCGGATCGAAGGCCACGTCGGCAAGCTCCGCGCCGAGCGGGAAAAGACCGAGGACAGGAAGCAAAAGAGCAAGAGGGCTTCTTCCGATTCGCCTCCTTCGGCTCCGATTGCGCCCAAGCGCCGGAGATTCCTGGCTTTGATTGATGAAGATGAAGATGAGGAGGAGGAGGAGGAGGAAGATCTGGAGTTGGTGAGGGGGAAGAGGCTTGTGAAGAAGCTGGCCGATGAGTTCGATAGGGTGGCTGATGCGGGGAAGGAGACGGTGGCTTCAAGGACTCGGAGCCGGAAATTGGAAGTGGATGACGGGATTGAGACGGAGACTCAGACTGTGATGCAGGTGGCAAAGGAGGTAAATAAGTTGAGCTTGAAGGGCAAAAAGTTGAAGAAGCGGAAGAGCAAGGGACCCAGGACTTCGCCCAGATTGGCAAACCGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

29.73

Weight (kDa)

9.85

Isoelectric Point (pI)

56.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52270 AT4G28310
fragaria_vesca FvH4_6g26250
malus_domestica MD17G1239900.v1.1
prunus_persica Prupe.3G132500_v2.0.a1
pyrus_communis pycom09g16430 pycom17g24320
rosa_chinensis RchiOBHm_Chr2g0126621
rosa_laevigata RLG00000018914
rosa_multiflora Rmu_sc0002369.1_g000021 Rmu_sc0007463.1_g000014
rosa_roxburghii Rroxscaffold_2G00117070
rosa_rugosa Rorug02G0264000
rosa_samantha Rh2AG321000 Rh2BG329300 Rh2DG348700
rosa_wichuraiana Rw2G026010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AarI CACCTGC 1 cut(s) 673
AasI GACNNNNNNGTC 1 cut(s) 245
AatII GACGTC 1 cut(s) 228
Acc36I ACCTGC 1 cut(s) 673
AccB1I GGYRCC 2 cut(s) 15, 29
AccBSI CCGCTC 1 cut(s) 385
AccI GTMKAC 1 cut(s) 249
AccII CGCG 2 cut(s) 205, 378
AclWI GGATC 4 cut(s) 221, 266, 279, 359
AcoI YGGCCR 1 cut(s) 567
AcyI GRCGYC 3 cut(s) 16, 30, 225
AfiI CCNNNNNNNGG 4 cut(s) 343, 402, 468, 637
AgsI TTSAA 5 cut(s) 235, 328, 618, 715, 730
AjiI CACGTC 1 cut(s) 364
AjnI CCWGG 4 cut(s) 284, 342, 477, 752
AloI GAACNNNNNNTCC 2 cut(s) 215, 247
AluBI AGCT 6 cut(s) 160, 324, 373, 565, 711, 783
AluI AGCT 6 cut(s) 160, 324, 373, 565, 711, 783
Alw26I GTCTC 3 cut(s) 599, 653, 659
AlwI GGATC 4 cut(s) 221, 266, 279, 359
AoxI GGCC 7 cut(s) 282, 288, 297, 316, 346, 358, 567
ApeKI GCWGC 2 cut(s) 192, 195
ArsI GACNNNNNNTTYG 2 cut(s) 348, 380
AspLEI GCGC 7 cut(s) 18, 32, 207, 333, 380, 460, 468
AspS9I GGNCC 5 cut(s) 288, 298, 306, 346, 749
AsuHPI GGTGA 1 cut(s) 550
AvaII GGWCC 2 cut(s) 306, 749
BamHI GGATCC 1 cut(s) 271
BanI GGYRCC 2 cut(s) 15, 29
BbvCI CCTCAGC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 204, 207
BceAI ACGGC 2 cut(s) 205, 248
BciT130I CCWGG 4 cut(s) 286, 344, 479, 754
BcoDI GTCTC 3 cut(s) 599, 653, 659
BfmI CTRYAG 1 cut(s) 258
BfoI RGCGCY 4 cut(s) 19, 33, 334, 469
BfuAI ACCTGC 1 cut(s) 673
BglI GCCNNNNNGGC 3 cut(s) 296, 345, 366
BglII AGATCT 1 cut(s) 526
BisI GCNGC 4 cut(s) 144, 193, 196, 316
BlsI GCNGC 4 cut(s) 145, 194, 197, 317
Bme1390I CCNGG 4 cut(s) 286, 344, 479, 754
Bme18I GGWCC 2 cut(s) 306, 749
BmgBI CACGTC 1 cut(s) 364
BmgT120I GGNCC 5 cut(s) 288, 298, 306, 346, 749
BmiI GGNNCC 7 cut(s) 17, 31, 273, 450, 629, 750, 751
BmrFI CCNGG 4 cut(s) 286, 344, 479, 754
BmsI GCATC 2 cut(s) 583, 669
BpmI CTGGAG 3 cut(s) 159, 326, 551
Bpu10I CCTNAGC 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 146
BsaHI GRCGYC 3 cut(s) 16, 30, 225
BsaJI CCNNGG 7 cut(s) 147, 209, 285, 309, 343, 396, 752
Bsc4I CCNNNNNNNGG 4 cut(s) 343, 402, 468, 637
Bse1I ACTGG 1 cut(s) 308
BseBI CCWGG 4 cut(s) 286, 344, 479, 754
BseDI CCNNGG 7 cut(s) 147, 209, 285, 309, 343, 396, 752
BseGI GGATG 1 cut(s) 652
BseLI CCNNNNNNNGG 4 cut(s) 343, 402, 468, 637
BseMII CTCAG 2 cut(s) 334, 683
BseNI ACTGG 1 cut(s) 308
BseRI GAGGAG 6 cut(s) 59, 521, 524, 527, 530, 533
BseXI GCAGC 2 cut(s) 204, 207
Bsh1236I CGCG 2 cut(s) 205, 378
BshFI GGCC 7 cut(s) 284, 290, 299, 318, 348, 360, 569
BshNI GGYRCC 2 cut(s) 15, 29
BsiSI CCGG 3 cut(s) 349, 469, 631
BslFI GGGAC 1 cut(s) 762
BslI CCNNNNNNNGG 4 cut(s) 343, 402, 468, 637
BsmAI GTCTC 3 cut(s) 599, 653, 659
BsmBI CGTCTC 2 cut(s) 599, 653
BsmFI GGGAC 1 cut(s) 762
BsnI GGCC 7 cut(s) 284, 290, 299, 318, 348, 360, 569
Bsp143I GATC 4 cut(s) 213, 271, 351, 526
Bsp19I CCATGG 2 cut(s) 147, 309
BspANI GGCC 7 cut(s) 284, 290, 299, 318, 348, 360, 569
BspCNI CTCAG 2 cut(s) 333, 682
BspFNI CGCG 2 cut(s) 205, 378
BspLI GGNNCC 7 cut(s) 17, 31, 273, 450, 629, 750, 751
BspMI ACCTGC 1 cut(s) 673
BspPI GGATC 4 cut(s) 221, 266, 279, 359
BspQI GCTCTTC 1 cut(s) 734
BspT107I GGYRCC 2 cut(s) 15, 29
BsrBI CCGCTC 1 cut(s) 385
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 7 cut(s) 147, 209, 285, 309, 343, 396, 752
BssMI GATC 4 cut(s) 213, 271, 351, 526
BssNI GRCGYC 3 cut(s) 16, 30, 225
BssT1I CCWWGG 2 cut(s) 147, 309
Bst2UI CCWGG 4 cut(s) 286, 344, 479, 754
Bst4CI ACNGT 3 cut(s) 610, 676, 779
Bst6I CTCTTC 2 cut(s) 542, 734
BstACI GRCGYC 3 cut(s) 16, 30, 225
BstC8I GCNNGC 3 cut(s) 62, 371, 567
BstDEI CTNAG 2 cut(s) 320, 669
BstDSI CCRYGG 2 cut(s) 147, 309
BstF5I GGATG 1 cut(s) 652
BstFNI CGCG 2 cut(s) 205, 378
BstH2I RGCGCY 4 cut(s) 19, 33, 334, 469
BstHHI GCGC 7 cut(s) 18, 32, 207, 333, 380, 460, 468
BstKTI GATC 4 cut(s) 216, 274, 354, 529
BstMAI GTCTC 3 cut(s) 599, 653, 659
BstMBI GATC 4 cut(s) 213, 271, 351, 526
BstNI CCWGG 4 cut(s) 286, 344, 479, 754
BstSCI CCNGG 4 cut(s) 284, 342, 477, 752
BstSFI CTRYAG 1 cut(s) 258
BstUI CGCG 2 cut(s) 205, 378
BstV1I GCAGC 2 cut(s) 204, 207
BstX2I RGATCY 3 cut(s) 213, 271, 526
BstXI CCANNNNNNTGG 1 cut(s) 26
BstYI RGATCY 3 cut(s) 213, 271, 526
BsuRI GGCC 7 cut(s) 284, 290, 299, 318, 348, 360, 569
BtgI CCRYGG 2 cut(s) 147, 309
BtrI CACGTC 1 cut(s) 364
BtsCI GGATG 1 cut(s) 652
BtsI GCAGTG 1 cut(s) 55
BtsIMutI CAGTG 2 cut(s) 55, 301
BveI ACCTGC 1 cut(s) 673
Cac8I GCNNGC 3 cut(s) 62, 371, 567
CfoI GCGC 7 cut(s) 18, 32, 207, 333, 380, 460, 468
Cfr13I GGNCC 5 cut(s) 288, 298, 306, 346, 749
CviAII CATG 3 cut(s) 148, 268, 310
DdeI CTNAG 2 cut(s) 320, 669
DinI GGCGCC 2 cut(s) 17, 31
DpnI GATC 4 cut(s) 215, 273, 353, 528
DpnII GATC 4 cut(s) 213, 271, 351, 526
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 567
Eam1104I CTCTTC 2 cut(s) 542, 734
EarI CTCTTC 2 cut(s) 542, 734
EciI GGCGGA 1 cut(s) 326
Eco130I CCWWGG 2 cut(s) 147, 309
Eco47I GGWCC 2 cut(s) 306, 749
EcoO109I RGGNCCY 1 cut(s) 749
EcoRII CCWGG 4 cut(s) 284, 342, 477, 752
EcoT14I CCWWGG 2 cut(s) 147, 309
EgeI GGCGCC 2 cut(s) 17, 31
EheI GGCGCC 2 cut(s) 17, 31
ErhI CCWWGG 2 cut(s) 147, 309
Esp3I CGTCTC 2 cut(s) 599, 653
FaeI CATG 3 cut(s) 151, 271, 313
FaiI YATR 4 cut(s) 81, 149, 269, 311
FalI AAGNNNNNCTT 2 cut(s) 695, 727
FaqI GGGAC 1 cut(s) 762
FatI CATG 3 cut(s) 147, 267, 309
FauI CCCGC 6 cut(s) 55, 69, 210, 261, 378, 589
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 4 cut(s) 144, 193, 196, 316
FokI GGATG 1 cut(s) 659
Fsp4HI GCNGC 4 cut(s) 144, 193, 196, 316
GlaI GCGC 7 cut(s) 17, 31, 206, 332, 379, 459, 467
GluI GCNGC 4 cut(s) 144, 193, 196, 316
GsuI CTGGAG 3 cut(s) 159, 326, 551
HaeII RGCGCY 4 cut(s) 19, 33, 334, 469
HaeIII GGCC 7 cut(s) 284, 290, 299, 318, 348, 360, 569
HapII CCGG 3 cut(s) 349, 469, 631
HhaI GCGC 7 cut(s) 18, 32, 207, 333, 380, 460, 468
Hin1I GRCGYC 3 cut(s) 16, 30, 225
Hin1II CATG 3 cut(s) 151, 271, 313
Hin6I GCGC 7 cut(s) 16, 30, 205, 331, 378, 458, 466
HinP1I GCGC 7 cut(s) 16, 30, 205, 331, 378, 458, 466
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 4 cut(s) 434, 474, 622, 667
HpaII CCGG 3 cut(s) 349, 469, 631
HphI GGTGA 1 cut(s) 550
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 5 cut(s) 213, 433, 453, 627, 672
Hpy188III TCNNGA 1 cut(s) 530
Hpy8I GTNNAC 1 cut(s) 250
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 6 cut(s) 83, 102, 350, 453, 595, 709
HpyCH4III ACNGT 3 cut(s) 610, 676, 779
HpyCH4IV ACGT 2 cut(s) 225, 363
HpyCH4V TGCA 1 cut(s) 682
HpyF3I CTNAG 2 cut(s) 320, 669
HpySE526I ACGT 2 cut(s) 225, 363
Hsp92I GRCGYC 3 cut(s) 16, 30, 225
Hsp92II CATG 3 cut(s) 151, 271, 313
HspAI GCGC 7 cut(s) 16, 30, 205, 331, 378, 458, 466
KasI GGCGCC 2 cut(s) 15, 29
KflI GGGWCCC 1 cut(s) 749
Kzo9I GATC 4 cut(s) 213, 271, 351, 526
LguI GCTCTTC 1 cut(s) 734
LmnI GCTCC 4 cut(s) 126, 378, 454, 627
Lsp1109I GCAGC 2 cut(s) 204, 207
LweI GCATC 2 cut(s) 583, 669
MaeII ACGT 2 cut(s) 225, 363
MalI GATC 4 cut(s) 215, 273, 353, 528
MbiI CCGCTC 1 cut(s) 385
MboI GATC 4 cut(s) 213, 271, 351, 526
MboII GAAGA 8 cut(s) 420, 506, 512, 536, 559, 571, 742, 751
MfeI CAATTG 1 cut(s) 116
MflI RGATCY 3 cut(s) 213, 271, 526
MluCI AATT 2 cut(s) 116, 635
Mly113I GGCGCC 2 cut(s) 16, 30
MlyI GAGTC 2 cut(s) 616, 661
MspI CCGG 3 cut(s) 349, 469, 631
MspR9I CCNGG 4 cut(s) 286, 344, 479, 754
MunI CAATTG 1 cut(s) 116
MvaI CCWGG 4 cut(s) 286, 344, 479, 754
MvnI CGCG 2 cut(s) 205, 378
NarI GGCGCC 2 cut(s) 16, 30
NcoI CCATGG 2 cut(s) 147, 309
NdeII GATC 4 cut(s) 213, 271, 351, 526
NlaIII CATG 3 cut(s) 151, 271, 313
NlaIV GGNNCC 7 cut(s) 17, 31, 273, 450, 629, 750, 751
NmeAIII GCCGAG 1 cut(s) 406
PaqCI CACCTGC 1 cut(s) 673
PciSI GCTCTTC 1 cut(s) 734
PcsI WCGNNNNNNNCGW 2 cut(s) 246, 360
PfeI GAWTC 2 cut(s) 434, 474
PkrI GCNGC 4 cut(s) 145, 194, 197, 317
PleI GAGTC 2 cut(s) 616, 661
PluTI GGCGCC 2 cut(s) 19, 33
PpsI GAGTC 2 cut(s) 616, 661
PpuMI RGGWCCY 1 cut(s) 749
PsiI TTATAA 1 cut(s) 81
Psp5II RGGWCCY 1 cut(s) 749
Psp6I CCWGG 4 cut(s) 284, 342, 477, 752
PspGI CCWGG 4 cut(s) 284, 342, 477, 752
PspN4I GGNNCC 7 cut(s) 17, 31, 273, 450, 629, 750, 751
PspPI GGNCC 5 cut(s) 288, 298, 306, 346, 749
PspPPI RGGWCCY 1 cut(s) 749
PsuI RGATCY 3 cut(s) 213, 271, 526
SalI GTCGAC 1 cut(s) 248
SapI GCTCTTC 1 cut(s) 734
SatI GCNGC 4 cut(s) 144, 193, 196, 316
Sau3AI GATC 4 cut(s) 213, 271, 351, 526
Sau96I GGNCC 5 cut(s) 288, 298, 306, 346, 749
SchI GAGTC 2 cut(s) 616, 661
ScrFI CCNGG 4 cut(s) 286, 344, 479, 754
SfaNI GCATC 2 cut(s) 583, 669
SfcI CTRYAG 1 cut(s) 258
SfiI GGCCNNNNNGGCC 1 cut(s) 296
SfoI GGCGCC 2 cut(s) 17, 31
SinI GGWCC 2 cut(s) 306, 749
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 2 cut(s) 116, 635
SspDI GGCGCC 2 cut(s) 15, 29
StyD4I CCNGG 4 cut(s) 284, 342, 477, 752
StyI CCWWGG 2 cut(s) 147, 309
TaaI ACNGT 3 cut(s) 610, 676, 779
TaiI ACGT 2 cut(s) 228, 366
TaqI TCGA 3 cut(s) 249, 354, 579
TaqII GACCGA 1 cut(s) 410
TasI AATT 2 cut(s) 116, 635
TauI GCSGC 2 cut(s) 146, 318
TfiI GAWTC 2 cut(s) 434, 474
TscAI CASTG 2 cut(s) 62, 308
TseI GCWGC 2 cut(s) 192, 195
TspDTI ATGAA 3 cut(s) 17, 507, 513
TspGWI ACGGA 3 cut(s) 236, 264, 677
TspRI CASTG 2 cut(s) 62, 308
VpaK11BI GGWCC 2 cut(s) 306, 749
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 249
ZraI GACGTC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.