MD17G1239900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014299
Physical Location & Seq
Reverse (-)
28915180 .. 28915923
744 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1239900.v1.1.491

Sequence Viewer

Length: 744 bp
ATGGTGATGAAGCTCAAAACAATTAGCCCCGCCAAGTTCTTCGGAAACACCCTCCCCCGCCCCCGCTTCTACACCGATGTCAAGTTCAACGACCACCGCGTCGACCCACCTGCCGACGTCCTCGACCCCTTTCTCTCGTGGGCCAACGAGGCCCACTGGACCATGGGCGGTCTCAGCTTCAAGCGCCTCAGGCTCCAGGGCCGCATCGAAGGCAGCGTCGGCAAACTCCGCGCGCAGAGGGAGAAGATCGAGAATGAGAAGCAAAAGCTTGCGAAATCCGCAAATGGGTCGGGTCGTAATCAGCCCAACGGCAAGAGGGCTTCCTCCGATTCGCCCCCTCCGGCTCCGATCGTGACAAAACGCCGGAGGTTCTTGGATGTGATCAGTGAGAGCGATGAGGAGGAACAGGAGGCAGAGGTTGTGAAGGGGAAGAGGCTTGTGAAGAAGCTGGTGGATGAGTTTGATAAGGTGGCTTTGGAGGCTGATAGAGATAACAGCGTGAGCCCCTCAAAGGGTTTGAGTGGCGGATCGGAGGGAGCGTCCACAAGGAGGACTCGGAGCCGGAGATCGGAGGAAGAGGAGGCAGCGGAGACCGTGTTGAAGGTGGCAGAGGAGGTGAATAAGCTGAGTTTCAAGGACAAGAAATTGAAGGGTAAAAGCAGCAAGGGGAAGGAGAACAAAGAGAAGGCCTCCGGTATTGTAAATGGCACTAGGACTTCGCCCAGATTGGCAAAACGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

27.5

Weight (kDa)

10.01

Isoelectric Point (pI)

56.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52270 AT4G28310
fragaria_vesca FvH4_6g26250
malus_domestica MD17G1239900.v1.1
prunus_persica Prupe.3G132500_v2.0.a1
pyrus_communis pycom09g16430 pycom17g24320
rosa_chinensis RchiOBHm_Chr2g0126621
rosa_laevigata RLG00000018914
rosa_multiflora Rmu_sc0002369.1_g000021 Rmu_sc0007463.1_g000014
rosa_roxburghii Rroxscaffold_2G00117070
rosa_rugosa Rorug02G0264000
rosa_samantha Rh2AG321000 Rh2BG329300 Rh2DG348700
rosa_wichuraiana Rw2G026010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 118
AasI GACNNNNNNGTC 1 cut(s) 98
AatII GACGTC 1 cut(s) 120
Acc36I ACCTGC 1 cut(s) 118
AccI GTMKAC 1 cut(s) 102
AccII CGCG 3 cut(s) 99, 231, 233
AclWI GGATC 1 cut(s) 535
AcyI GRCGYC 1 cut(s) 117
AfiI CCNNNNNNNGG 5 cut(s) 285, 511, 512, 549, 568
AgsI TTSAA 5 cut(s) 88, 181, 601, 634, 649
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 6 cut(s) 13, 177, 268, 448, 625, 741
AluI AGCT 6 cut(s) 13, 177, 268, 448, 625, 741
Alw26I GTCTC 2 cut(s) 176, 584
AlwI GGATC 1 cut(s) 535
AoxI GGCC 4 cut(s) 141, 150, 199, 687
ApeKI GCWGC 3 cut(s) 213, 584, 660
ArsI GACNNNNNNTTYG 2 cut(s) 201, 233
AspLEI GCGC 3 cut(s) 186, 233, 235
AspS9I GGNCC 4 cut(s) 141, 151, 159, 199
AsuHPI GGTGA 2 cut(s) 16, 628
AvaII GGWCC 1 cut(s) 159
AxyI CCTNAGG 1 cut(s) 188
BanII GRGCYC 1 cut(s) 506
BauI CACGAG 1 cut(s) 136
BbvI GCAGC 3 cut(s) 225, 596, 672
BceAI ACGGC 1 cut(s) 325
BcgI CGANNNNNNTGC 4 cut(s) 92, 126, 270, 304
BciT130I CCWGG 1 cut(s) 197
BclI TGATCA 1 cut(s) 381
BcoDI GTCTC 2 cut(s) 176, 584
BfaI CTAG 1 cut(s) 711
BfoI RGCGCY 1 cut(s) 187
BfuAI ACCTGC 1 cut(s) 118
BglI GCCNNNNNGGC 1 cut(s) 149
BisI GCNGC 4 cut(s) 202, 214, 585, 661
BlsI GCNGC 4 cut(s) 203, 215, 586, 662
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 4 cut(s) 141, 151, 159, 199
BmiI GGNNCC 3 cut(s) 194, 345, 560
BmrFI CCNGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 213
BplI GAGNNNNNCTC 2 cut(s) 674, 706
BpmI CTGGAG 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 117
BsaI GGTCTC 2 cut(s) 176, 584
BsaJI CCNNGG 2 cut(s) 162, 196
BsaWI WCCGGW 1 cut(s) 692
BsaXI ACNNNNNCTCC 4 cut(s) 524, 554, 581, 611
Bsc4I CCNNNNNNNGG 5 cut(s) 285, 511, 512, 549, 568
Bse1I ACTGG 1 cut(s) 161
Bse21I CCTNAGG 1 cut(s) 188
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 2 cut(s) 162, 196
BseGI GGATG 2 cut(s) 382, 460
BseLI CCNNNNNNNGG 5 cut(s) 285, 511, 512, 549, 568
BseMII CTCAG 3 cut(s) 187, 202, 617
BseNI ACTGG 1 cut(s) 161
BsePI GCGCGC 1 cut(s) 231
BseRI GAGGAG 3 cut(s) 413, 593, 626
BseXI GCAGC 3 cut(s) 225, 596, 672
Bsh1236I CGCG 3 cut(s) 99, 231, 233
Bsh1285I CGRYCG 1 cut(s) 351
BshFI GGCC 4 cut(s) 143, 152, 201, 689
BsiEI CGRYCG 1 cut(s) 351
BsiSI CCGG 4 cut(s) 341, 364, 562, 693
BslI CCNNNNNNNGG 5 cut(s) 285, 511, 512, 549, 568
BsmAI GTCTC 2 cut(s) 176, 584
BsnI GGCC 4 cut(s) 143, 152, 201, 689
Bso31I GGTCTC 2 cut(s) 176, 584
Bsp1286I GDGCHC 1 cut(s) 506
Bsp143I GATC 5 cut(s) 246, 348, 381, 527, 566
Bsp19I CCATGG 1 cut(s) 162
BspANI GGCC 4 cut(s) 143, 152, 201, 689
BspCNI CTCAG 3 cut(s) 186, 201, 618
BspFNI CGCG 3 cut(s) 99, 231, 233
BspLI GGNNCC 3 cut(s) 194, 345, 560
BspMI ACCTGC 1 cut(s) 118
BspPI GGATC 1 cut(s) 535
BspTNI GGTCTC 2 cut(s) 176, 584
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 162, 196
BssHII GCGCGC 1 cut(s) 231
BssMI GATC 5 cut(s) 246, 348, 381, 527, 566
BssNI GRCGYC 1 cut(s) 117
BssSI CACGAG 1 cut(s) 136
BssT1I CCWWGG 1 cut(s) 162
Bst2BI CACGAG 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 595
Bst6I CTCTTC 2 cut(s) 425, 570
BstACI GRCGYC 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 233, 270
BstDEI CTNAG 3 cut(s) 173, 188, 626
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 2 cut(s) 382, 460
BstFNI CGCG 3 cut(s) 99, 231, 233
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 3 cut(s) 186, 233, 235
BstKTI GATC 5 cut(s) 249, 351, 384, 530, 569
BstMAI GTCTC 2 cut(s) 176, 584
BstMBI GATC 5 cut(s) 246, 348, 381, 527, 566
BstMCI CGRYCG 1 cut(s) 351
BstMWI GCNNNNNNNGC 9 cut(s) 149, 174, 183, 190, 210, 219, 228, 278, 479
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstUI CGCG 3 cut(s) 99, 231, 233
BstV1I GCAGC 3 cut(s) 225, 596, 672
Bsu36I CCTNAGG 1 cut(s) 188
BsuRI GGCC 4 cut(s) 143, 152, 201, 689
BtgI CCRYGG 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 408
BtsCI GGATG 2 cut(s) 382, 460
BtsIMutI CAGTG 2 cut(s) 154, 391
BveI ACCTGC 1 cut(s) 118
Cac8I GCNNGC 2 cut(s) 233, 270
CfoI GCGC 3 cut(s) 186, 233, 235
Cfr13I GGNCC 4 cut(s) 141, 151, 159, 199
CseI GACGC 3 cut(s) 88, 205, 528
CviAII CATG 1 cut(s) 163
DdeI CTNAG 3 cut(s) 173, 188, 626
DpnI GATC 5 cut(s) 248, 350, 383, 529, 568
DpnII GATC 5 cut(s) 246, 348, 381, 527, 566
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
Eam1104I CTCTTC 2 cut(s) 425, 570
EarI CTCTTC 2 cut(s) 425, 570
EciI GGCGGA 1 cut(s) 540
Eco130I CCWWGG 1 cut(s) 162
Eco147I AGGCCT 1 cut(s) 689
Eco24I GRGCYC 1 cut(s) 506
Eco31I GGTCTC 2 cut(s) 176, 584
Eco47I GGWCC 1 cut(s) 159
Eco81I CCTNAGG 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 506
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 1 cut(s) 166
FaiI YATR 1 cut(s) 164
FatI CATG 1 cut(s) 162
FauI CCCGC 3 cut(s) 37, 65, 71
FbaI TGATCA 1 cut(s) 381
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 4 cut(s) 202, 214, 585, 661
FokI GGATG 2 cut(s) 389, 467
FriOI GRGCYC 1 cut(s) 506
Fsp4HI GCNGC 4 cut(s) 202, 214, 585, 661
FspBI CTAG 1 cut(s) 711
GlaI GCGC 3 cut(s) 185, 232, 234
GluI GCNGC 4 cut(s) 202, 214, 585, 661
GsuI CTGGAG 1 cut(s) 179
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 4 cut(s) 143, 152, 201, 689
HapII CCGG 4 cut(s) 341, 364, 562, 693
HgaI GACGC 3 cut(s) 88, 205, 528
HhaI GCGC 3 cut(s) 186, 233, 235
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 3 cut(s) 184, 231, 233
HinP1I GCGC 3 cut(s) 184, 231, 233
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 2 cut(s) 329, 553
HpaII CCGG 4 cut(s) 341, 364, 562, 693
HphI GGTGA 2 cut(s) 16, 628
Hpy166II GTNNAC 2 cut(s) 103, 543
Hpy188I TCNGA 6 cut(s) 44, 328, 348, 532, 558, 571
Hpy188III TCNNGA 2 cut(s) 250, 352
Hpy8I GTNNAC 2 cut(s) 103, 543
Hpy99I CGWCG 3 cut(s) 104, 119, 221
HpyAV CCTTC 6 cut(s) 203, 418, 595, 643, 664, 679
HpyCH4III ACNGT 1 cut(s) 595
HpyCH4IV ACGT 2 cut(s) 117, 736
HpyF10VI GCNNNNNNNGC 9 cut(s) 149, 174, 183, 190, 210, 219, 228, 278, 479
HpyF3I CTNAG 3 cut(s) 173, 188, 626
HpySE526I ACGT 2 cut(s) 117, 736
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 3 cut(s) 184, 231, 233
Ksp22I TGATCA 1 cut(s) 381
Kzo9I GATC 5 cut(s) 246, 348, 381, 527, 566
LmnI GCTCC 4 cut(s) 198, 349, 536, 558
Lsp1109I GCAGC 3 cut(s) 225, 596, 672
LweI GCATC 1 cut(s) 213
MaeI CTAG 1 cut(s) 711
MaeII ACGT 2 cut(s) 117, 736
MaeIII GTNAC 1 cut(s) 352
MalI GATC 5 cut(s) 248, 350, 383, 529, 568
MboI GATC 5 cut(s) 246, 348, 381, 527, 566
MboII GAAGA 5 cut(s) 31, 256, 442, 454, 587
MhlI GDGCHC 1 cut(s) 506
MluCI AATT 2 cut(s) 21, 644
MlyI GAGTC 1 cut(s) 547
MspA1I CMGCKG 1 cut(s) 587
MspI CCGG 4 cut(s) 341, 364, 562, 693
MspR9I CCNGG 1 cut(s) 197
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 3 cut(s) 99, 231, 233
MwoI GCNNNNNNNGC 9 cut(s) 149, 174, 183, 190, 210, 219, 228, 278, 479
NcoI CCATGG 1 cut(s) 162
NdeII GATC 5 cut(s) 246, 348, 381, 527, 566
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 3 cut(s) 194, 345, 560
NmuCI GTSAC 1 cut(s) 352
PaqCI CACCTGC 1 cut(s) 118
PauI GCGCGC 1 cut(s) 231
PceI AGGCCT 1 cut(s) 689
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 213, 536
PfeI GAWTC 1 cut(s) 329
PkrI GCNGC 4 cut(s) 203, 215, 586, 662
Ple19I CGATCG 1 cut(s) 351
PleI GAGTC 1 cut(s) 547
PpsI GAGTC 1 cut(s) 547
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 3 cut(s) 194, 345, 560
PspPI GGNCC 4 cut(s) 141, 151, 159, 199
PteI GCGCGC 1 cut(s) 231
PvuI CGATCG 1 cut(s) 351
SalI GTCGAC 1 cut(s) 101
SatI GCNGC 4 cut(s) 202, 214, 585, 661
Sau3AI GATC 5 cut(s) 246, 348, 381, 527, 566
Sau96I GGNCC 4 cut(s) 141, 151, 159, 199
SchI GAGTC 1 cut(s) 547
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 1 cut(s) 506
SfaNI GCATC 1 cut(s) 213
SfiI GGCCNNNNNGGCC 1 cut(s) 149
SinI GGWCC 1 cut(s) 159
Sse9I AATT 2 cut(s) 21, 644
SseBI AGGCCT 1 cut(s) 689
SspMI CTAG 1 cut(s) 711
StuI AGGCCT 1 cut(s) 689
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 595
TaiI ACGT 2 cut(s) 120, 739
TaqI TCGA 4 cut(s) 102, 123, 207, 249
TasI AATT 2 cut(s) 21, 644
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 1 cut(s) 329
TscAI CASTG 2 cut(s) 161, 391
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 3 cut(s) 213, 584, 660
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 23
TspRI CASTG 2 cut(s) 161, 391
VpaK11BI GGWCC 1 cut(s) 159
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 1 cut(s) 711
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.