Rh2AG321000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014299
Physical Location & Seq
Forward (+)
46051706 .. 46052335
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG321000.1

Sequence Viewer

Length: 630 bp
ATGGTTCTAAAGCTCAAGTTAGCCAGTCCAGCCAAGTTCTACGGCAGCAGCCTCCCGCGCCCTCGGATCTACACGGACGTCAAGTTCAATGACGACCGGGTCGACCCGCCTGTAGCCGTCATGGATCCGTTTCTGGCCTGGGCCAACGAGGCCCACTGGTCCATGGGCGGCCTCAGCTTCAAGCGCCTCCGCCTCCAGGGCCGGATCGAAGGCCACGTCGGCAAGCTCCGCGCCGAGCGGGAAAAGACCGAGGACAGGAAGCAAAAGAGCAAGAGGGCTTCTTCCGATTCGCCTCCTTCGGCTCCGATTGCGCCCAAGCGCCGGAGATTCCTGGCCTTGATTGATGAAGATGAGGAGGAGGAAGAGGAAGATCTGGAGGTGGTGAGGGGGAAGAGGCTTGTGAAGAAGCTGGCCGATGAGTTCGATAGGGTGGCTGATGCGGAGGAGGAGACGGTGGCTTCAAGGACTCGGAGCCGGAAATTGGAAGTGGATGACGGGATTGAGACGGAGACTCAGACTGTGATGCAGGTGGCAAAGGAGGTAAATAAGTTGAGTTTGAAGGGCAAAAAGTTGAAGAAGAGGAAAAGCAAAGGACCCAGGACTTCGCCCAGATTGGCAAACCGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

23.82

Weight (kDa)

9.79

Isoelectric Point (pI)

59.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52270 AT4G28310
fragaria_vesca FvH4_6g26250
malus_domestica MD17G1239900.v1.1
prunus_persica Prupe.3G132500_v2.0.a1
pyrus_communis pycom09g16430 pycom17g24320
rosa_chinensis RchiOBHm_Chr2g0126621
rosa_laevigata RLG00000018914
rosa_multiflora Rmu_sc0002369.1_g000021 Rmu_sc0007463.1_g000014
rosa_roxburghii Rroxscaffold_2G00117070
rosa_rugosa Rorug02G0264000
rosa_samantha Rh2AG321000 Rh2BG329300 Rh2DG348700
rosa_wichuraiana Rw2G026010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 517
AasI GACNNNNNNGTC 1 cut(s) 98
AatII GACGTC 1 cut(s) 81
Acc36I ACCTGC 1 cut(s) 517
AccBSI CCGCTC 1 cut(s) 238
AccI GTMKAC 1 cut(s) 102
AccII CGCG 2 cut(s) 58, 231
AciI CCGC 7 cut(s) 56, 107, 168, 190, 229, 238, 440
AclWI GGATC 4 cut(s) 74, 119, 132, 212
AcoI YGGCCR 1 cut(s) 411
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 4 cut(s) 196, 255, 321, 481
AgsI TTSAA 5 cut(s) 88, 181, 462, 559, 574
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 4 cut(s) 137, 195, 330, 596
AloI GAACNNNNNNTCC 2 cut(s) 68, 100
AluBI AGCT 5 cut(s) 13, 177, 226, 409, 627
AluI AGCT 5 cut(s) 13, 177, 226, 409, 627
Alw26I GTCTC 3 cut(s) 443, 497, 503
AlwI GGATC 4 cut(s) 74, 119, 132, 212
AoxI GGCC 8 cut(s) 135, 141, 150, 169, 199, 211, 333, 411
ApeKI GCWGC 2 cut(s) 45, 48
ArsI GACNNNNNNTTYG 2 cut(s) 201, 233
AspLEI GCGC 5 cut(s) 60, 186, 233, 313, 321
AspS9I GGNCC 5 cut(s) 141, 151, 159, 199, 593
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 394
AvaII GGWCC 2 cut(s) 159, 593
BamHI GGATCC 1 cut(s) 124
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 2 cut(s) 57, 60
BceAI ACGGC 2 cut(s) 58, 101
BciT130I CCWGG 4 cut(s) 139, 197, 332, 598
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 3 cut(s) 443, 497, 503
BfmI CTRYAG 1 cut(s) 111
BfoI RGCGCY 2 cut(s) 187, 322
BfuAI ACCTGC 1 cut(s) 517
BglI GCCNNNNNGGC 3 cut(s) 149, 198, 219
BglII AGATCT 1 cut(s) 370
BisI GCNGC 3 cut(s) 46, 49, 169
BlsI GCNGC 3 cut(s) 47, 50, 170
Bme1390I CCNGG 5 cut(s) 98, 139, 197, 332, 598
Bme18I GGWCC 2 cut(s) 159, 593
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 5 cut(s) 141, 151, 159, 199, 593
BmiI GGNNCC 4 cut(s) 126, 303, 473, 595
BmrFI CCNGG 5 cut(s) 98, 139, 197, 332, 598
BmsI GCATC 2 cut(s) 427, 513
BpmI CTGGAG 2 cut(s) 179, 395
Bpu10I CCTNAGC 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 6 cut(s) 62, 138, 162, 196, 249, 596
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 255, 321, 481
Bse1I ACTGG 2 cut(s) 24, 161
BseBI CCWGG 4 cut(s) 139, 197, 332, 598
BseDI CCNNGG 6 cut(s) 62, 138, 162, 196, 249, 596
BseGI GGATG 1 cut(s) 496
BseLI CCNNNNNNNGG 4 cut(s) 196, 255, 321, 481
BseMII CTCAG 2 cut(s) 187, 527
BseNI ACTGG 2 cut(s) 24, 161
BseRI GAGGAG 4 cut(s) 368, 371, 458, 461
BseXI GCAGC 2 cut(s) 57, 60
Bsh1236I CGCG 2 cut(s) 58, 231
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 413
BsiEI CGRYCG 1 cut(s) 97
BsiSI CCGG 4 cut(s) 97, 202, 322, 475
BslI CCNNNNNNNGG 4 cut(s) 196, 255, 321, 481
BsmAI GTCTC 3 cut(s) 443, 497, 503
BsmBI CGTCTC 2 cut(s) 443, 497
BsnI GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 413
Bsp143I GATC 4 cut(s) 66, 124, 204, 370
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 7 cut(s) 56, 107, 168, 190, 229, 238, 440
BspANI GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 413
BspCNI CTCAG 2 cut(s) 186, 526
BspFNI CGCG 2 cut(s) 58, 231
BspLI GGNNCC 4 cut(s) 126, 303, 473, 595
BspMI ACCTGC 1 cut(s) 517
BspPI GGATC 4 cut(s) 74, 119, 132, 212
BsrBI CCGCTC 1 cut(s) 238
BsrI ACTGG 2 cut(s) 24, 161
BssECI CCNNGG 6 cut(s) 62, 138, 162, 196, 249, 596
BssMI GATC 4 cut(s) 66, 124, 204, 370
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 4 cut(s) 139, 197, 332, 598
Bst4CI ACNGT 3 cut(s) 454, 520, 623
Bst6I CTCTTC 3 cut(s) 357, 386, 572
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 224, 411
BstDEI CTNAG 2 cut(s) 173, 513
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 496
BstFNI CGCG 2 cut(s) 58, 231
BstH2I RGCGCY 2 cut(s) 187, 322
BstHHI GCGC 5 cut(s) 60, 186, 233, 313, 321
BstKTI GATC 4 cut(s) 69, 127, 207, 373
BstMAI GTCTC 3 cut(s) 443, 497, 503
BstMBI GATC 4 cut(s) 66, 124, 204, 370
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 9 cut(s) 29, 57, 149, 174, 183, 198, 219, 228, 308
BstNI CCWGG 4 cut(s) 139, 197, 332, 598
BstSCI CCNGG 5 cut(s) 96, 137, 195, 330, 596
BstSFI CTRYAG 1 cut(s) 111
BstUI CGCG 2 cut(s) 58, 231
BstV1I GCAGC 2 cut(s) 57, 60
BstX2I RGATCY 3 cut(s) 66, 124, 370
BstYI RGATCY 3 cut(s) 66, 124, 370
BsuRI GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 413
BtgI CCRYGG 1 cut(s) 162
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 1 cut(s) 496
BtsIMutI CAGTG 1 cut(s) 154
BveI ACCTGC 1 cut(s) 517
Cac8I GCNNGC 2 cut(s) 224, 411
CfoI GCGC 5 cut(s) 60, 186, 233, 313, 321
Cfr13I GGNCC 5 cut(s) 141, 151, 159, 199, 593
CviAII CATG 2 cut(s) 121, 163
DdeI CTNAG 2 cut(s) 173, 513
DpnI GATC 4 cut(s) 68, 126, 206, 372
DpnII GATC 4 cut(s) 66, 124, 204, 370
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 411
Eam1104I CTCTTC 3 cut(s) 357, 386, 572
EarI CTCTTC 3 cut(s) 357, 386, 572
EciI GGCGGA 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 2 cut(s) 159, 593
EcoO109I RGGNCCY 1 cut(s) 593
EcoRII CCWGG 4 cut(s) 137, 195, 330, 596
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
Esp3I CGTCTC 2 cut(s) 443, 497
FaeI CATG 2 cut(s) 124, 166
FaiI YATR 2 cut(s) 122, 164
FatI CATG 2 cut(s) 120, 162
FauI CCCGC 3 cut(s) 63, 114, 231
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 46, 49, 169
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 3 cut(s) 46, 49, 169
GlaI GCGC 5 cut(s) 59, 185, 232, 312, 320
GluI GCNGC 3 cut(s) 46, 49, 169
GsuI CTGGAG 2 cut(s) 179, 395
HaeII RGCGCY 2 cut(s) 187, 322
HaeIII GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 413
HapII CCGG 4 cut(s) 97, 202, 322, 475
HhaI GCGC 5 cut(s) 60, 186, 233, 313, 321
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 124, 166
Hin6I GCGC 5 cut(s) 58, 184, 231, 311, 319
HinP1I GCGC 5 cut(s) 58, 184, 231, 311, 319
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 4 cut(s) 287, 327, 466, 511
HpaII CCGG 4 cut(s) 97, 202, 322, 475
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 5 cut(s) 66, 286, 306, 471, 516
Hpy188III TCNNGA 1 cut(s) 374
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 3 cut(s) 203, 306, 553
HpyCH4III ACNGT 3 cut(s) 454, 520, 623
HpyCH4IV ACGT 2 cut(s) 78, 216
HpyCH4V TGCA 1 cut(s) 526
HpyF10VI GCNNNNNNNGC 9 cut(s) 29, 57, 149, 174, 183, 198, 219, 228, 308
HpyF3I CTNAG 2 cut(s) 173, 513
HpySE526I ACGT 2 cut(s) 78, 216
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 124, 166
HspAI GCGC 5 cut(s) 58, 184, 231, 311, 319
Kzo9I GATC 4 cut(s) 66, 124, 204, 370
LmnI GCTCC 3 cut(s) 231, 307, 471
Lsp1109I GCAGC 2 cut(s) 57, 60
LweI GCATC 2 cut(s) 427, 513
MaeII ACGT 2 cut(s) 78, 216
MalI GATC 4 cut(s) 68, 126, 206, 372
MbiI CCGCTC 1 cut(s) 238
MboI GATC 4 cut(s) 66, 124, 204, 370
MboII GAAGA 8 cut(s) 273, 359, 374, 380, 403, 415, 586, 589
MflI RGATCY 3 cut(s) 66, 124, 370
MluCI AATT 1 cut(s) 479
MlyI GAGTC 2 cut(s) 460, 505
MspI CCGG 4 cut(s) 97, 202, 322, 475
MspR9I CCNGG 5 cut(s) 98, 139, 197, 332, 598
MvaI CCWGG 4 cut(s) 139, 197, 332, 598
MvnI CGCG 2 cut(s) 58, 231
MwoI GCNNNNNNNGC 9 cut(s) 29, 57, 149, 174, 183, 198, 219, 228, 308
NciI CCSGG 1 cut(s) 98
NcoI CCATGG 1 cut(s) 162
NdeII GATC 4 cut(s) 66, 124, 204, 370
NlaIII CATG 2 cut(s) 124, 166
NlaIV GGNNCC 4 cut(s) 126, 303, 473, 595
NmeAIII GCCGAG 1 cut(s) 259
PaqCI CACCTGC 1 cut(s) 517
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 213
PfeI GAWTC 2 cut(s) 287, 327
PflFI GACNNNGTC 1 cut(s) 98
PkrI GCNGC 3 cut(s) 47, 50, 170
PleI GAGTC 2 cut(s) 460, 505
PpsI GAGTC 2 cut(s) 460, 505
PpuMI RGGWCCY 1 cut(s) 593
Psp5II RGGWCCY 1 cut(s) 593
Psp6I CCWGG 4 cut(s) 137, 195, 330, 596
PspGI CCWGG 4 cut(s) 137, 195, 330, 596
PspN4I GGNNCC 4 cut(s) 126, 303, 473, 595
PspPI GGNCC 5 cut(s) 141, 151, 159, 199, 593
PspPPI RGGWCCY 1 cut(s) 593
PsuI RGATCY 3 cut(s) 66, 124, 370
PsyI GACNNNGTC 1 cut(s) 98
SalI GTCGAC 1 cut(s) 101
SatI GCNGC 3 cut(s) 46, 49, 169
Sau3AI GATC 4 cut(s) 66, 124, 204, 370
Sau96I GGNCC 5 cut(s) 141, 151, 159, 199, 593
SchI GAGTC 2 cut(s) 460, 505
ScrFI CCNGG 5 cut(s) 98, 139, 197, 332, 598
SfaNI GCATC 2 cut(s) 427, 513
SfcI CTRYAG 1 cut(s) 111
SfiI GGCCNNNNNGGCC 1 cut(s) 149
SinI GGWCC 2 cut(s) 159, 593
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 1 cut(s) 479
SsiI CCGC 7 cut(s) 56, 107, 168, 190, 229, 238, 440
StyD4I CCNGG 5 cut(s) 96, 137, 195, 330, 596
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 3 cut(s) 454, 520, 623
TaiI ACGT 2 cut(s) 81, 219
TaqI TCGA 3 cut(s) 102, 207, 423
TaqII GACCGA 1 cut(s) 263
TasI AATT 1 cut(s) 479
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 2 cut(s) 287, 327
TscAI CASTG 1 cut(s) 161
TseI GCWGC 2 cut(s) 45, 48
TspDTI ATGAA 1 cut(s) 360
TspGWI ACGGA 3 cut(s) 89, 117, 521
TspRI CASTG 1 cut(s) 161
Tth111I GACNNNGTC 1 cut(s) 98
VpaK11BI GGWCC 2 cut(s) 159, 593
XmiI GTMKAC 1 cut(s) 102
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.