Rmu_sc0002369.1_g000021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002369.1
OG0014299
Physical Location & Seq
Reverse (-)
79260 .. 79898
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002369.1_g000021.1.cds

Sequence Viewer

Length: 639 bp
atggttctaaagctcaagttagccactccagccaagttctacggcagcagcctcccgcgccctcggatctacacggacgtcaagttcaatgacgaacgggtcgacccgcctgtagccgtcatggatccgtttctggcctgggccaacgaggcccactggtccatgggcggcctcagcttcaagcgcctccgcctccagggccggatcgaaggccacgtcggcaagctccgcgccgagcgggaaaagaccgaggacaggaagcaaaagagcaagagggcttcttccgattcgcctccttcggctccgattgcgcccaagcgccggagattcctggccttgattgatgaagatgaagatgaggaggaggaggaggaggaagatctggaggtggtgagggggaagaggcttgtgaagaagctggccgatgagtttgatagggtggctgatgcggaggaggagacggtggcttcaaggactcggagccggaaattggaagtggatgacgggattgagacggagactcagactgtgatgcaggtggcaaaggaggtaaataagttgagcttgaagggcaaaaagttgaagaagcggaagagcaagggacccaggacttcgcccagattggcaaaccgtagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

24.22

Weight (kDa)

9.56

Isoelectric Point (pI)

59.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52270 AT4G28310
fragaria_vesca FvH4_6g26250
malus_domestica MD17G1239900.v1.1
prunus_persica Prupe.3G132500_v2.0.a1
pyrus_communis pycom09g16430 pycom17g24320
rosa_chinensis RchiOBHm_Chr2g0126621
rosa_laevigata RLG00000018914
rosa_multiflora Rmu_sc0002369.1_g000021 Rmu_sc0007463.1_g000014
rosa_roxburghii Rroxscaffold_2G00117070
rosa_rugosa Rorug02G0264000
rosa_samantha Rh2AG321000 Rh2BG329300 Rh2DG348700
rosa_wichuraiana Rw2G026010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 526
AasI GACNNNNNNGTC 1 cut(s) 98
AatII GACGTC 1 cut(s) 81
Acc36I ACCTGC 1 cut(s) 526
AccBSI CCGCTC 1 cut(s) 238
AccI GTMKAC 1 cut(s) 102
AccII CGCG 2 cut(s) 58, 231
AciI CCGC 8 cut(s) 56, 107, 168, 190, 229, 238, 449, 589
AclWI GGATC 4 cut(s) 74, 119, 132, 212
AcoI YGGCCR 1 cut(s) 420
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 4 cut(s) 196, 255, 321, 490
AgsI TTSAA 5 cut(s) 88, 181, 471, 568, 583
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 4 cut(s) 137, 195, 330, 605
AloI GAACNNNNNNTCC 2 cut(s) 68, 100
AluBI AGCT 6 cut(s) 13, 177, 226, 418, 564, 636
AluI AGCT 6 cut(s) 13, 177, 226, 418, 564, 636
Alw26I GTCTC 3 cut(s) 452, 506, 512
AlwI GGATC 4 cut(s) 74, 119, 132, 212
AoxI GGCC 8 cut(s) 135, 141, 150, 169, 199, 211, 333, 420
ApeKI GCWGC 2 cut(s) 45, 48
ArsI GACNNNNNNTTYG 2 cut(s) 201, 233
AspLEI GCGC 5 cut(s) 60, 186, 233, 313, 321
AspS9I GGNCC 5 cut(s) 141, 151, 159, 199, 602
AsuHPI GGTGA 1 cut(s) 403
AvaII GGWCC 2 cut(s) 159, 602
BamHI GGATCC 1 cut(s) 124
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 2 cut(s) 57, 60
BceAI ACGGC 2 cut(s) 58, 101
BciT130I CCWGG 4 cut(s) 139, 197, 332, 607
BcoDI GTCTC 3 cut(s) 452, 506, 512
BfmI CTRYAG 1 cut(s) 111
BfoI RGCGCY 2 cut(s) 187, 322
BfuAI ACCTGC 1 cut(s) 526
BglI GCCNNNNNGGC 3 cut(s) 149, 198, 219
BglII AGATCT 1 cut(s) 379
BisI GCNGC 3 cut(s) 46, 49, 169
BlsI GCNGC 3 cut(s) 47, 50, 170
Bme1390I CCNGG 4 cut(s) 139, 197, 332, 607
Bme18I GGWCC 2 cut(s) 159, 602
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 5 cut(s) 141, 151, 159, 199, 602
BmiI GGNNCC 5 cut(s) 126, 303, 482, 603, 604
BmrFI CCNGG 4 cut(s) 139, 197, 332, 607
BmsI GCATC 2 cut(s) 436, 522
BpmI CTGGAG 3 cut(s) 12, 179, 404
Bpu10I CCTNAGC 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 6 cut(s) 62, 138, 162, 196, 249, 605
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 255, 321, 490
Bse1I ACTGG 1 cut(s) 161
BseBI CCWGG 4 cut(s) 139, 197, 332, 607
BseDI CCNNGG 6 cut(s) 62, 138, 162, 196, 249, 605
BseGI GGATG 1 cut(s) 505
BseLI CCNNNNNNNGG 4 cut(s) 196, 255, 321, 490
BseMII CTCAG 2 cut(s) 187, 536
BseNI ACTGG 1 cut(s) 161
BseRI GAGGAG 7 cut(s) 374, 377, 380, 383, 386, 467, 470
BseXI GCAGC 2 cut(s) 57, 60
Bsh1236I CGCG 2 cut(s) 58, 231
BshFI GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 422
BsiSI CCGG 3 cut(s) 202, 322, 484
BslFI GGGAC 1 cut(s) 615
BslI CCNNNNNNNGG 4 cut(s) 196, 255, 321, 490
BsmAI GTCTC 3 cut(s) 452, 506, 512
BsmBI CGTCTC 2 cut(s) 452, 506
BsmFI GGGAC 1 cut(s) 615
BsnI GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 422
Bsp143I GATC 4 cut(s) 66, 124, 204, 379
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 8 cut(s) 56, 107, 168, 190, 229, 238, 449, 589
BspANI GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 422
BspCNI CTCAG 2 cut(s) 186, 535
BspFNI CGCG 2 cut(s) 58, 231
BspLI GGNNCC 5 cut(s) 126, 303, 482, 603, 604
BspMI ACCTGC 1 cut(s) 526
BspPI GGATC 4 cut(s) 74, 119, 132, 212
BspQI GCTCTTC 1 cut(s) 587
BsrBI CCGCTC 1 cut(s) 238
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 6 cut(s) 62, 138, 162, 196, 249, 605
BssMI GATC 4 cut(s) 66, 124, 204, 379
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 4 cut(s) 139, 197, 332, 607
Bst4CI ACNGT 3 cut(s) 463, 529, 632
Bst6I CTCTTC 2 cut(s) 395, 587
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 224, 420
BstDEI CTNAG 2 cut(s) 173, 522
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 505
BstFNI CGCG 2 cut(s) 58, 231
BstH2I RGCGCY 2 cut(s) 187, 322
BstHHI GCGC 5 cut(s) 60, 186, 233, 313, 321
BstKTI GATC 4 cut(s) 69, 127, 207, 382
BstMAI GTCTC 3 cut(s) 452, 506, 512
BstMBI GATC 4 cut(s) 66, 124, 204, 379
BstNI CCWGG 4 cut(s) 139, 197, 332, 607
BstSCI CCNGG 4 cut(s) 137, 195, 330, 605
BstSFI CTRYAG 1 cut(s) 111
BstUI CGCG 2 cut(s) 58, 231
BstV1I GCAGC 2 cut(s) 57, 60
BstX2I RGATCY 3 cut(s) 66, 124, 379
BstYI RGATCY 3 cut(s) 66, 124, 379
BsuRI GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 422
BtgI CCRYGG 1 cut(s) 162
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 1 cut(s) 505
BtsIMutI CAGTG 1 cut(s) 154
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 2 cut(s) 224, 420
CfoI GCGC 5 cut(s) 60, 186, 233, 313, 321
Cfr13I GGNCC 5 cut(s) 141, 151, 159, 199, 602
CviAII CATG 2 cut(s) 121, 163
DdeI CTNAG 2 cut(s) 173, 522
DpnI GATC 4 cut(s) 68, 126, 206, 381
DpnII GATC 4 cut(s) 66, 124, 204, 379
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 420
Eam1104I CTCTTC 2 cut(s) 395, 587
EarI CTCTTC 2 cut(s) 395, 587
EciI GGCGGA 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 2 cut(s) 159, 602
EcoO109I RGGNCCY 1 cut(s) 602
EcoRII CCWGG 4 cut(s) 137, 195, 330, 605
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
Esp3I CGTCTC 2 cut(s) 452, 506
FaeI CATG 2 cut(s) 124, 166
FaiI YATR 2 cut(s) 122, 164
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 1 cut(s) 615
FatI CATG 2 cut(s) 120, 162
FauI CCCGC 3 cut(s) 63, 114, 231
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 46, 49, 169
FokI GGATG 1 cut(s) 512
Fsp4HI GCNGC 3 cut(s) 46, 49, 169
GlaI GCGC 5 cut(s) 59, 185, 232, 312, 320
GluI GCNGC 3 cut(s) 46, 49, 169
GsuI CTGGAG 3 cut(s) 12, 179, 404
HaeII RGCGCY 2 cut(s) 187, 322
HaeIII GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 422
HapII CCGG 3 cut(s) 202, 322, 484
HhaI GCGC 5 cut(s) 60, 186, 233, 313, 321
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 124, 166
Hin6I GCGC 5 cut(s) 58, 184, 231, 311, 319
HinP1I GCGC 5 cut(s) 58, 184, 231, 311, 319
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 4 cut(s) 287, 327, 475, 520
HpaII CCGG 3 cut(s) 202, 322, 484
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 5 cut(s) 66, 286, 306, 480, 525
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 3 cut(s) 203, 306, 562
HpyCH4III ACNGT 3 cut(s) 463, 529, 632
HpyCH4IV ACGT 2 cut(s) 78, 216
HpyCH4V TGCA 1 cut(s) 535
HpyF3I CTNAG 2 cut(s) 173, 522
HpySE526I ACGT 2 cut(s) 78, 216
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 124, 166
HspAI GCGC 5 cut(s) 58, 184, 231, 311, 319
KflI GGGWCCC 1 cut(s) 602
Kzo9I GATC 4 cut(s) 66, 124, 204, 379
LguI GCTCTTC 1 cut(s) 587
LmnI GCTCC 3 cut(s) 231, 307, 480
Lsp1109I GCAGC 2 cut(s) 57, 60
LweI GCATC 2 cut(s) 436, 522
MaeII ACGT 2 cut(s) 78, 216
MalI GATC 4 cut(s) 68, 126, 206, 381
MbiI CCGCTC 1 cut(s) 238
MboI GATC 4 cut(s) 66, 124, 204, 379
MboII GAAGA 8 cut(s) 273, 359, 365, 389, 412, 424, 595, 604
MflI RGATCY 3 cut(s) 66, 124, 379
MluCI AATT 1 cut(s) 488
MlyI GAGTC 2 cut(s) 469, 514
MspI CCGG 3 cut(s) 202, 322, 484
MspR9I CCNGG 4 cut(s) 139, 197, 332, 607
MvaI CCWGG 4 cut(s) 139, 197, 332, 607
MvnI CGCG 2 cut(s) 58, 231
NcoI CCATGG 1 cut(s) 162
NdeII GATC 4 cut(s) 66, 124, 204, 379
NlaIII CATG 2 cut(s) 124, 166
NlaIV GGNNCC 5 cut(s) 126, 303, 482, 603, 604
NmeAIII GCCGAG 1 cut(s) 259
PaqCI CACCTGC 1 cut(s) 526
PciSI GCTCTTC 1 cut(s) 587
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 213
PfeI GAWTC 2 cut(s) 287, 327
PkrI GCNGC 3 cut(s) 47, 50, 170
PleI GAGTC 2 cut(s) 469, 514
PpsI GAGTC 2 cut(s) 469, 514
PpuMI RGGWCCY 1 cut(s) 602
Psp5II RGGWCCY 1 cut(s) 602
Psp6I CCWGG 4 cut(s) 137, 195, 330, 605
PspGI CCWGG 4 cut(s) 137, 195, 330, 605
PspN4I GGNNCC 5 cut(s) 126, 303, 482, 603, 604
PspPI GGNCC 5 cut(s) 141, 151, 159, 199, 602
PspPPI RGGWCCY 1 cut(s) 602
PsuI RGATCY 3 cut(s) 66, 124, 379
SalI GTCGAC 1 cut(s) 101
SapI GCTCTTC 1 cut(s) 587
SatI GCNGC 3 cut(s) 46, 49, 169
Sau3AI GATC 4 cut(s) 66, 124, 204, 379
Sau96I GGNCC 5 cut(s) 141, 151, 159, 199, 602
SchI GAGTC 2 cut(s) 469, 514
ScrFI CCNGG 4 cut(s) 139, 197, 332, 607
SfaNI GCATC 2 cut(s) 436, 522
SfcI CTRYAG 1 cut(s) 111
SfiI GGCCNNNNNGGCC 1 cut(s) 149
SinI GGWCC 2 cut(s) 159, 602
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 1 cut(s) 488
SsiI CCGC 8 cut(s) 56, 107, 168, 190, 229, 238, 449, 589
StyD4I CCNGG 4 cut(s) 137, 195, 330, 605
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 3 cut(s) 463, 529, 632
TaiI ACGT 2 cut(s) 81, 219
TaqI TCGA 2 cut(s) 102, 207
TaqII GACCGA 1 cut(s) 263
TasI AATT 1 cut(s) 488
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 2 cut(s) 287, 327
TscAI CASTG 1 cut(s) 161
TseI GCWGC 2 cut(s) 45, 48
TspDTI ATGAA 2 cut(s) 360, 366
TspGWI ACGGA 3 cut(s) 89, 117, 530
TspRI CASTG 1 cut(s) 161
VpaK11BI GGWCC 2 cut(s) 159, 602
XmiI GTMKAC 1 cut(s) 102
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.