pycom09g16430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0014299
Physical Location & Seq
Reverse (-)
16715776 .. 16716288
513 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g16430.1

Sequence Viewer

Length: 513 bp
ATGTCAAGTTCAACGACCACCGGGTCGACCCACCTGCCGACGTCCCCGACCCCCTACTCTCGTGGGCCAATGAGCCCTACTGGTCCACGGGCGGCCTCAGCTTCAAGCGCCTCTGGCAAGAGGGCTTCCTCTGATTCGCCCCCTCCGGCTCCGATTGCGACAAAACGCCGGAGGTTCTTGGATCTGATCAATGAAAGCGATGAGGAAGAACACGAGGCGGAGGTTGTGGAGGAGAGGAGGCTTGTGAAGAAGCTGGCGGAAGAGTTTGATAAGGTGACTATGGAGGCTGGGAGAGTTAACAGCACGAGCCCTTCAAAGGGTTTGAGTGGCGGATCGGAAAGGACTCGTAGTCGGAGATCGGTGAACGATGAGGCTGCTGAGACTGTGTTGAAGGTGGCAGAGGAGGTAAATAAACTGAGTTTTAAGGACAAGAATGTGAAGGGCAAAACCAGGATGGGAAAGGAGAACAGTCAGGTCTCTGGTAAGGACTTGGCCCAGGTTGGCAAAACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.25

Weight (kDa)

9.52

Isoelectric Point (pI)

65.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52270 AT4G28310
fragaria_vesca FvH4_6g26250
malus_domestica MD17G1239900.v1.1
prunus_persica Prupe.3G132500_v2.0.a1
pyrus_communis pycom09g16430 pycom17g24320
rosa_chinensis RchiOBHm_Chr2g0126621
rosa_laevigata RLG00000018914
rosa_multiflora Rmu_sc0002369.1_g000021 Rmu_sc0007463.1_g000014
rosa_roxburghii Rroxscaffold_2G00117070
rosa_rugosa Rorug02G0264000
rosa_samantha Rh2AG321000 Rh2BG329300 Rh2DG348700
rosa_wichuraiana Rw2G026010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 42
AasI GACNNNNNNGTC 1 cut(s) 22
AatII GACGTC 1 cut(s) 44
Acc36I ACCTGC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 26
AciI CCGC 4 cut(s) 92, 218, 257, 330
AclWI GGATC 2 cut(s) 189, 340
AcyI GRCGYC 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 316, 317
AgsI TTSAA 4 cut(s) 12, 105, 315, 391
AhdI GACNNNNNGTC 1 cut(s) 348
AjnI CCWGG 2 cut(s) 449, 495
AluBI AGCT 2 cut(s) 101, 253
AluI AGCT 2 cut(s) 101, 253
Alw26I GTCTC 2 cut(s) 374, 481
AlwI GGATC 2 cut(s) 189, 340
AoxI GGCC 3 cut(s) 65, 93, 492
ApeKI GCWGC 1 cut(s) 374
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 3 cut(s) 65, 83, 493
AsuC2I CCSGG 1 cut(s) 22
AsuHPI GGTGA 2 cut(s) 286, 373
AvaII GGWCC 1 cut(s) 83
BanII GRGCYC 2 cut(s) 77, 311
BauI CACGAG 3 cut(s) 60, 212, 304
BbvCI CCTCAGC 1 cut(s) 97
BbvI GCAGC 1 cut(s) 361
BccI CCATC 1 cut(s) 448
BcgI CGANNNNNNTGC 4 cut(s) 16, 50, 356, 390
BciT130I CCWGG 2 cut(s) 451, 497
BclI TGATCA 1 cut(s) 186
BcnI CCSGG 1 cut(s) 22
BcoDI GTCTC 2 cut(s) 374, 481
BfoI RGCGCY 1 cut(s) 111
BfuAI ACCTGC 1 cut(s) 42
BisI GCNGC 2 cut(s) 93, 375
BlsI GCNGC 2 cut(s) 94, 376
Bme1390I CCNGG 3 cut(s) 22, 451, 497
Bme18I GGWCC 1 cut(s) 83
BmeRI GACNNNNNGTC 1 cut(s) 348
BmgT120I GGNCC 3 cut(s) 65, 83, 493
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 3 cut(s) 22, 451, 497
Bpu10I CCTNAGC 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 22
BsaHI GRCGYC 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 481
BsaJI CCNNGG 2 cut(s) 86, 495
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 317
Bse1I ACTGG 1 cut(s) 85
BseBI CCWGG 2 cut(s) 451, 497
BseDI CCNNGG 2 cut(s) 86, 495
BseGI GGATG 1 cut(s) 459
BseLI CCNNNNNNNGG 2 cut(s) 316, 317
BseMII CTCAG 3 cut(s) 111, 369, 407
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 3 cut(s) 245, 250, 416
BseXI GCAGC 1 cut(s) 361
BseYI CCCAGC 1 cut(s) 287
BshFI GGCC 3 cut(s) 67, 95, 494
BsiSI CCGG 3 cut(s) 21, 146, 169
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 2 cut(s) 316, 317
BsmAI GTCTC 2 cut(s) 374, 481
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 3 cut(s) 67, 95, 494
Bso31I GGTCTC 1 cut(s) 481
Bsp1286I GDGCHC 2 cut(s) 77, 311
Bsp143I GATC 4 cut(s) 181, 186, 332, 356
BspACI CCGC 4 cut(s) 92, 218, 257, 330
BspANI GGCC 3 cut(s) 67, 95, 494
BspCNI CTCAG 3 cut(s) 110, 370, 408
BspLI GGNNCC 1 cut(s) 150
BspMI ACCTGC 1 cut(s) 42
BspPI GGATC 2 cut(s) 189, 340
BspTNI GGTCTC 1 cut(s) 481
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 2 cut(s) 86, 495
BssMI GATC 4 cut(s) 181, 186, 332, 356
BssNI GRCGYC 1 cut(s) 41
BssSI CACGAG 3 cut(s) 60, 212, 304
Bst2BI CACGAG 3 cut(s) 60, 212, 304
Bst2UI CCWGG 2 cut(s) 451, 497
Bst4CI ACNGT 2 cut(s) 385, 470
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 3 cut(s) 97, 378, 416
BstDSI CCRYGG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 459
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 4 cut(s) 184, 189, 335, 359
BstMAI GTCTC 2 cut(s) 374, 481
BstMBI GATC 4 cut(s) 181, 186, 332, 356
BstMWI GCNNNNNNNGC 4 cut(s) 98, 107, 114, 155
BstNI CCWGG 2 cut(s) 451, 497
BstSCI CCNGG 3 cut(s) 20, 449, 495
BstV1I GCAGC 1 cut(s) 361
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 3 cut(s) 67, 95, 494
BtgI CCRYGG 1 cut(s) 86
BtgZI GCGATG 1 cut(s) 213
BtsCI GGATG 1 cut(s) 459
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 255
CfoI GCGC 1 cut(s) 110
Cfr13I GGNCC 3 cut(s) 65, 83, 493
DdeI CTNAG 3 cut(s) 97, 378, 416
DpnI GATC 4 cut(s) 183, 188, 334, 358
DpnII GATC 4 cut(s) 181, 186, 332, 356
DrdI GACNNNNNNGTC 1 cut(s) 22
DriI GACNNNNNGTC 1 cut(s) 348
DseDI GACNNNNNNGTC 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 255
Eam1105I GACNNNNNGTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 255
EciI GGCGGA 3 cut(s) 233, 272, 345
Eco24I GRGCYC 2 cut(s) 77, 311
Eco31I GGTCTC 1 cut(s) 481
Eco47I GGWCC 1 cut(s) 83
EcoRII CCWGG 2 cut(s) 449, 495
EcoT38I GRGCYC 2 cut(s) 77, 311
FaiI YATR 1 cut(s) 281
FaqI GGGAC 1 cut(s) 28
FbaI TGATCA 1 cut(s) 186
FblI GTMKAC 1 cut(s) 26
Fnu4HI GCNGC 2 cut(s) 93, 375
FokI GGATG 1 cut(s) 466
FriOI GRGCYC 2 cut(s) 77, 311
Fsp4HI GCNGC 2 cut(s) 93, 375
GlaI GCGC 1 cut(s) 109
GluI GCNGC 2 cut(s) 93, 375
GsaI CCCAGC 1 cut(s) 291
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 3 cut(s) 67, 95, 494
HapII CCGG 3 cut(s) 21, 146, 169
HhaI GCGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 41
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HincII GTYRAC 2 cut(s) 27, 298
HindII GTYRAC 2 cut(s) 27, 298
HinfI GANTC 2 cut(s) 134, 343
HpaI GTTAAC 1 cut(s) 298
HpaII CCGG 3 cut(s) 21, 146, 169
HphI GGTGA 2 cut(s) 286, 373
Hpy166II GTNNAC 4 cut(s) 27, 86, 298, 364
Hpy188I TCNGA 5 cut(s) 133, 153, 186, 337, 354
Hpy8I GTNNAC 4 cut(s) 27, 86, 298, 364
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 3 cut(s) 321, 385, 433
HpyCH4III ACNGT 2 cut(s) 385, 470
HpyCH4IV ACGT 2 cut(s) 41, 509
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 107, 114, 155
HpyF3I CTNAG 3 cut(s) 97, 378, 416
HpySE526I ACGT 2 cut(s) 41, 509
Hsp92I GRCGYC 1 cut(s) 41
HspAI GCGC 1 cut(s) 108
Ksp22I TGATCA 1 cut(s) 186
KspAI GTTAAC 1 cut(s) 298
Kzo9I GATC 4 cut(s) 181, 186, 332, 356
LmnI GCTCC 1 cut(s) 154
Lsp1109I GCAGC 1 cut(s) 361
MaeII ACGT 2 cut(s) 41, 509
MaeIII GTNAC 1 cut(s) 274
MalI GATC 4 cut(s) 183, 188, 334, 358
MboI GATC 4 cut(s) 181, 186, 332, 356
MboII GAAGA 3 cut(s) 218, 259, 272
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 2 cut(s) 77, 311
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 332
MseI TTAA 2 cut(s) 297, 423
MspI CCGG 3 cut(s) 21, 146, 169
MspR9I CCNGG 3 cut(s) 22, 451, 497
MvaI CCWGG 2 cut(s) 451, 497
MwoI GCNNNNNNNGC 4 cut(s) 98, 107, 114, 155
NciI CCSGG 1 cut(s) 22
NdeII GATC 4 cut(s) 181, 186, 332, 356
NlaIV GGNNCC 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 274
PaqCI CACCTGC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 2 cut(s) 94, 376
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
Psp6I CCWGG 2 cut(s) 449, 495
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 2 cut(s) 449, 495
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 3 cut(s) 65, 83, 493
PsuI RGATCY 1 cut(s) 181
SalI GTCGAC 1 cut(s) 25
SaqAI TTAA 2 cut(s) 297, 423
SatI GCNGC 2 cut(s) 93, 375
Sau3AI GATC 4 cut(s) 181, 186, 332, 356
Sau96I GGNCC 3 cut(s) 65, 83, 493
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 3 cut(s) 22, 451, 497
SduI GDGCHC 2 cut(s) 77, 311
SinI GGWCC 1 cut(s) 83
SsiI CCGC 4 cut(s) 92, 218, 257, 330
StyD4I CCNGG 3 cut(s) 20, 449, 495
TaaI ACNGT 2 cut(s) 385, 470
TaiI ACGT 2 cut(s) 44, 512
TaqI TCGA 1 cut(s) 26
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 2 cut(s) 297, 423
Tru9I TTAA 2 cut(s) 297, 423
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 26
ZraI GACGTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.