Rh2DG348700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0014299
Physical Location & Seq
Forward (+)
48666888 .. 48667514
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG348700.1

Sequence Viewer

Length: 627 bp
ATGGTTCTAAAGCTCAAGTTAGCCACTCCAGCCAAGTTCTACGGCAGCAGCCTCCCGCGCCCTCGGATCTACACGGACGTCAAGTTCAATGACGAACGGGTCGACCCGCCTGTAGCCGTCATGGATCCGTTTCTGGCCTGGGCCAACGAGGCCCACTGGTCCATGGGCGGCCTCAGCTTCAAGCGCCTCCGCCTCCAGGGCCGGATCGAAGGCCACGTCGGCAAGCTCCGCGCCGAGCGGGAAAAGACCGAGGACAGGAAGCAAAAGAGCAAGAGGGCTTCTTCCGATTCGCCTCCTTCGGCTCCGATTGCGACCAAGCGCCGGAGATTCCTGGCCTTGATTGATGAAGATGAAGATGAGGAGGAGGATCTGGAGTTGGTGAGGGGGAAGAGGCTTGTGAAGAAGCTGGCCGATGAGTTCGATAGGGTGGCTGATGCGGAGGAGGAGACGGTGGCTTCAAGGACTCGGAGCCGGAAATTGGAAGTGGATGATGGGATTGAGACGGAGACTCGGACTGTGATGCAGGTGGCAAAGGAGGTAAATAAGTTGAGTTTGAAGGGCAAAATGTTGAAGAAGCGGAAGAGCAAGGGACCCAGGACTTCGCCCAGATTGGCAAACAGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

23.69

Weight (kDa)

9.81

Isoelectric Point (pI)

53.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52270 AT4G28310
fragaria_vesca FvH4_6g26250
malus_domestica MD17G1239900.v1.1
prunus_persica Prupe.3G132500_v2.0.a1
pyrus_communis pycom09g16430 pycom17g24320
rosa_chinensis RchiOBHm_Chr2g0126621
rosa_laevigata RLG00000018914
rosa_multiflora Rmu_sc0002369.1_g000021 Rmu_sc0007463.1_g000014
rosa_roxburghii Rroxscaffold_2G00117070
rosa_rugosa Rorug02G0264000
rosa_samantha Rh2AG321000 Rh2BG329300 Rh2DG348700
rosa_wichuraiana Rw2G026010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 514
AasI GACNNNNNNGTC 1 cut(s) 98
AatII GACGTC 1 cut(s) 81
Acc36I ACCTGC 1 cut(s) 514
AccBSI CCGCTC 1 cut(s) 238
AccI GTMKAC 1 cut(s) 102
AccII CGCG 2 cut(s) 58, 231
AciI CCGC 8 cut(s) 56, 107, 168, 190, 229, 238, 437, 577
AclWI GGATC 5 cut(s) 74, 119, 132, 212, 375
AcoI YGGCCR 1 cut(s) 408
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 4 cut(s) 196, 255, 321, 478
AgsI TTSAA 5 cut(s) 88, 181, 459, 556, 571
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 4 cut(s) 137, 195, 330, 593
AloI GAACNNNNNNTCC 2 cut(s) 68, 100
AluBI AGCT 5 cut(s) 13, 177, 226, 406, 624
AluI AGCT 5 cut(s) 13, 177, 226, 406, 624
Alw26I GTCTC 3 cut(s) 440, 494, 500
AlwI GGATC 5 cut(s) 74, 119, 132, 212, 375
AlwNI CAGNNNCTG 1 cut(s) 624
AoxI GGCC 8 cut(s) 135, 141, 150, 169, 199, 211, 333, 408
ApeKI GCWGC 2 cut(s) 45, 48
ArsI GACNNNNNNTTYG 2 cut(s) 201, 233
AspLEI GCGC 4 cut(s) 60, 186, 233, 321
AspS9I GGNCC 5 cut(s) 141, 151, 159, 199, 590
AsuHPI GGTGA 1 cut(s) 391
AvaII GGWCC 2 cut(s) 159, 590
BamHI GGATCC 1 cut(s) 124
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 2 cut(s) 57, 60
BccI CCATC 1 cut(s) 485
BceAI ACGGC 2 cut(s) 58, 101
BciT130I CCWGG 4 cut(s) 139, 197, 332, 595
BcoDI GTCTC 3 cut(s) 440, 494, 500
BfmI CTRYAG 1 cut(s) 111
BfoI RGCGCY 2 cut(s) 187, 322
BfuAI ACCTGC 1 cut(s) 514
BglI GCCNNNNNGGC 3 cut(s) 149, 198, 219
BisI GCNGC 3 cut(s) 46, 49, 169
BlsI GCNGC 3 cut(s) 47, 50, 170
Bme1390I CCNGG 4 cut(s) 139, 197, 332, 595
Bme18I GGWCC 2 cut(s) 159, 590
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 5 cut(s) 141, 151, 159, 199, 590
BmiI GGNNCC 5 cut(s) 126, 303, 470, 591, 592
BmrFI CCNGG 4 cut(s) 139, 197, 332, 595
BmsI GCATC 2 cut(s) 424, 510
BpmI CTGGAG 3 cut(s) 12, 179, 392
Bpu10I CCTNAGC 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 6 cut(s) 62, 138, 162, 196, 249, 593
Bsc4I CCNNNNNNNGG 4 cut(s) 196, 255, 321, 478
Bse1I ACTGG 1 cut(s) 161
BseBI CCWGG 4 cut(s) 139, 197, 332, 595
BseDI CCNNGG 6 cut(s) 62, 138, 162, 196, 249, 593
BseGI GGATG 1 cut(s) 493
BseLI CCNNNNNNNGG 4 cut(s) 196, 255, 321, 478
BseMII CTCAG 1 cut(s) 187
BseNI ACTGG 1 cut(s) 161
BseRI GAGGAG 4 cut(s) 374, 377, 455, 458
BseXI GCAGC 2 cut(s) 57, 60
Bsh1236I CGCG 2 cut(s) 58, 231
BshFI GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 410
BsiSI CCGG 3 cut(s) 202, 322, 472
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 4 cut(s) 196, 255, 321, 478
BsmAI GTCTC 3 cut(s) 440, 494, 500
BsmBI CGTCTC 2 cut(s) 440, 494
BsmFI GGGAC 1 cut(s) 603
BsnI GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 410
Bsp143I GATC 4 cut(s) 66, 124, 204, 367
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 8 cut(s) 56, 107, 168, 190, 229, 238, 437, 577
BspANI GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 410
BspCNI CTCAG 1 cut(s) 186
BspFNI CGCG 2 cut(s) 58, 231
BspLI GGNNCC 5 cut(s) 126, 303, 470, 591, 592
BspMI ACCTGC 1 cut(s) 514
BspPI GGATC 5 cut(s) 74, 119, 132, 212, 375
BspQI GCTCTTC 1 cut(s) 575
BsrBI CCGCTC 1 cut(s) 238
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 6 cut(s) 62, 138, 162, 196, 249, 593
BssMI GATC 4 cut(s) 66, 124, 204, 367
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 4 cut(s) 139, 197, 332, 595
Bst4CI ACNGT 3 cut(s) 451, 517, 620
Bst6I CTCTTC 2 cut(s) 383, 575
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 224, 408
BstDEI CTNAG 1 cut(s) 173
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 493
BstFNI CGCG 2 cut(s) 58, 231
BstH2I RGCGCY 2 cut(s) 187, 322
BstHHI GCGC 4 cut(s) 60, 186, 233, 321
BstKTI GATC 4 cut(s) 69, 127, 207, 370
BstMAI GTCTC 3 cut(s) 440, 494, 500
BstMBI GATC 4 cut(s) 66, 124, 204, 367
BstMWI GCNNNNNNNGC 9 cut(s) 29, 57, 149, 174, 183, 198, 219, 228, 308
BstNI CCWGG 4 cut(s) 139, 197, 332, 595
BstSCI CCNGG 4 cut(s) 137, 195, 330, 593
BstSFI CTRYAG 1 cut(s) 111
BstUI CGCG 2 cut(s) 58, 231
BstV1I GCAGC 2 cut(s) 57, 60
BstX2I RGATCY 3 cut(s) 66, 124, 367
BstYI RGATCY 3 cut(s) 66, 124, 367
BsuRI GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 410
BtgI CCRYGG 1 cut(s) 162
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 1 cut(s) 493
BtsIMutI CAGTG 1 cut(s) 154
BveI ACCTGC 1 cut(s) 514
Cac8I GCNNGC 2 cut(s) 224, 408
CaiI CAGNNNCTG 1 cut(s) 624
CfoI GCGC 4 cut(s) 60, 186, 233, 321
Cfr13I GGNCC 5 cut(s) 141, 151, 159, 199, 590
CviAII CATG 2 cut(s) 121, 163
DdeI CTNAG 1 cut(s) 173
DpnI GATC 4 cut(s) 68, 126, 206, 369
DpnII GATC 4 cut(s) 66, 124, 204, 367
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 2 cut(s) 383, 575
EarI CTCTTC 2 cut(s) 383, 575
EciI GGCGGA 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 2 cut(s) 159, 590
EcoO109I RGGNCCY 1 cut(s) 590
EcoRII CCWGG 4 cut(s) 137, 195, 330, 593
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
Esp3I CGTCTC 2 cut(s) 440, 494
FaeI CATG 2 cut(s) 124, 166
FaiI YATR 2 cut(s) 122, 164
FaqI GGGAC 1 cut(s) 603
FatI CATG 2 cut(s) 120, 162
FauI CCCGC 3 cut(s) 63, 114, 231
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 46, 49, 169
FokI GGATG 1 cut(s) 500
Fsp4HI GCNGC 3 cut(s) 46, 49, 169
GlaI GCGC 4 cut(s) 59, 185, 232, 320
GluI GCNGC 3 cut(s) 46, 49, 169
GsuI CTGGAG 3 cut(s) 12, 179, 392
HaeII RGCGCY 2 cut(s) 187, 322
HaeIII GGCC 8 cut(s) 137, 143, 152, 171, 201, 213, 335, 410
HapII CCGG 3 cut(s) 202, 322, 472
HhaI GCGC 4 cut(s) 60, 186, 233, 321
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 124, 166
Hin6I GCGC 4 cut(s) 58, 184, 231, 319
HinP1I GCGC 4 cut(s) 58, 184, 231, 319
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 4 cut(s) 287, 327, 463, 508
HpaII CCGG 3 cut(s) 202, 322, 472
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 5 cut(s) 66, 286, 306, 468, 513
Hpy188III TCNNGA 1 cut(s) 371
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 3 cut(s) 203, 306, 550
HpyCH4III ACNGT 3 cut(s) 451, 517, 620
HpyCH4IV ACGT 2 cut(s) 78, 216
HpyCH4V TGCA 1 cut(s) 523
HpyF10VI GCNNNNNNNGC 9 cut(s) 29, 57, 149, 174, 183, 198, 219, 228, 308
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 2 cut(s) 78, 216
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 124, 166
HspAI GCGC 4 cut(s) 58, 184, 231, 319
KflI GGGWCCC 1 cut(s) 590
Kzo9I GATC 4 cut(s) 66, 124, 204, 367
LguI GCTCTTC 1 cut(s) 575
LmnI GCTCC 3 cut(s) 231, 307, 468
Lsp1109I GCAGC 2 cut(s) 57, 60
LweI GCATC 2 cut(s) 424, 510
MaeII ACGT 2 cut(s) 78, 216
MalI GATC 4 cut(s) 68, 126, 206, 369
MbiI CCGCTC 1 cut(s) 238
MboI GATC 4 cut(s) 66, 124, 204, 367
MboII GAAGA 7 cut(s) 273, 359, 365, 400, 412, 583, 592
MflI RGATCY 3 cut(s) 66, 124, 367
MluCI AATT 1 cut(s) 476
MlyI GAGTC 2 cut(s) 457, 502
MspI CCGG 3 cut(s) 202, 322, 472
MspR9I CCNGG 4 cut(s) 139, 197, 332, 595
MvaI CCWGG 4 cut(s) 139, 197, 332, 595
MvnI CGCG 2 cut(s) 58, 231
MwoI GCNNNNNNNGC 9 cut(s) 29, 57, 149, 174, 183, 198, 219, 228, 308
NcoI CCATGG 1 cut(s) 162
NdeII GATC 4 cut(s) 66, 124, 204, 367
NlaIII CATG 2 cut(s) 124, 166
NlaIV GGNNCC 5 cut(s) 126, 303, 470, 591, 592
NmeAIII GCCGAG 1 cut(s) 259
PaqCI CACCTGC 1 cut(s) 514
PciSI GCTCTTC 1 cut(s) 575
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 213
PfeI GAWTC 2 cut(s) 287, 327
PkrI GCNGC 3 cut(s) 47, 50, 170
PleI GAGTC 2 cut(s) 457, 502
PpsI GAGTC 2 cut(s) 457, 502
PpuMI RGGWCCY 1 cut(s) 590
Psp5II RGGWCCY 1 cut(s) 590
Psp6I CCWGG 4 cut(s) 137, 195, 330, 593
PspGI CCWGG 4 cut(s) 137, 195, 330, 593
PspN4I GGNNCC 5 cut(s) 126, 303, 470, 591, 592
PspPI GGNCC 5 cut(s) 141, 151, 159, 199, 590
PspPPI RGGWCCY 1 cut(s) 590
PstNI CAGNNNCTG 1 cut(s) 624
PsuI RGATCY 3 cut(s) 66, 124, 367
SalI GTCGAC 1 cut(s) 101
SapI GCTCTTC 1 cut(s) 575
SatI GCNGC 3 cut(s) 46, 49, 169
Sau3AI GATC 4 cut(s) 66, 124, 204, 367
Sau96I GGNCC 5 cut(s) 141, 151, 159, 199, 590
SchI GAGTC 2 cut(s) 457, 502
ScrFI CCNGG 4 cut(s) 139, 197, 332, 595
SetI ASST 9 cut(s) 15, 81, 179, 219, 228, 408, 528, 540, 626
SfaNI GCATC 2 cut(s) 424, 510
SfcI CTRYAG 1 cut(s) 111
SfiI GGCCNNNNNGGCC 1 cut(s) 149
SinI GGWCC 2 cut(s) 159, 590
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 1 cut(s) 476
SsiI CCGC 8 cut(s) 56, 107, 168, 190, 229, 238, 437, 577
StyD4I CCNGG 4 cut(s) 137, 195, 330, 593
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 3 cut(s) 451, 517, 620
TaiI ACGT 2 cut(s) 81, 219
TaqI TCGA 3 cut(s) 102, 207, 420
TaqII GACCGA 1 cut(s) 263
TasI AATT 1 cut(s) 476
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 2 cut(s) 287, 327
TscAI CASTG 1 cut(s) 161
TseI GCWGC 2 cut(s) 45, 48
TspDTI ATGAA 2 cut(s) 360, 366
TspGWI ACGGA 3 cut(s) 89, 117, 518
TspRI CASTG 1 cut(s) 161
VpaK11BI GGWCC 2 cut(s) 159, 590
XmiI GTMKAC 1 cut(s) 102
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.