Prupe.3G132500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014299
Physical Location & Seq
Reverse (-)
13736852 .. 13738775
1924 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G132500.1

Sequence Viewer

Length: 762 bp
ATGGTGCAAAAGCTCAAGCTTGCTAGCCCAGTCAAGTTCTACGGCCACAGCCTCCCCCGCCCCCGGATCTACACCGACGTCAAGTTCAACGACCACCGAGTCGATCCGCCTGTTGCCGTCCTCGACCCTCTGCTCTGGTGGGCCAACGAAGCTCACTGGTCCATGGGCGGCCTCAGTTTCAAGCGCATAAGGCTCCAGGGCCGTATTGAAGGCAACGTCGGCAAGCTCCGCGTGCAGCGCGAGAAGACCGAGAGGAAGAGGCAAAAACTCGAGAAATCCGCAAATGGGTCGGCCTCAAATCAGTCCAATAGCAAGAGGGCTGCCTCTGATTCGCCTCCTCCGGCTCCGATTGCGACGAAGCGCCGGAGATTCTTGGATCTGATCGATGAAGATGATGAAGATGGTAACGATGCGGATGAGGTGGAGCATGAGGTTGAGGCTGTGAAGGGGAAGAGGCTCGTGAAGAATCTAGCGGATGCGTTTGATAAGGTGGCTATGGAGGGCGAGGGAGGCAACAGCCTGAGCCCATCGAAGGGTTTGGGTGGTGAATCTGAGGGAATTGCTACGAGAACTCGGAGTCGGAGATCGGAGGAAGATGAGGCTGCAGAGACTGTATTGAAGGTGGCAGAGGAGGTAAATAAGTTGAGTTTCAAGGACAAAAAGTTGAAGGGCAAAAGCAAGGGAAAAGAGAACAAGCAGCAGACCGGGTCTAGCAATGTAAATGGGACTAGGACTTCGCCCAGATTGGCAAACCGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

28.07

Weight (kDa)

9.71

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52270 AT4G28310
fragaria_vesca FvH4_6g26250
malus_domestica MD17G1239900.v1.1
prunus_persica Prupe.3G132500_v2.0.a1
pyrus_communis pycom09g16430 pycom17g24320
rosa_chinensis RchiOBHm_Chr2g0126621
rosa_laevigata RLG00000018914
rosa_multiflora Rmu_sc0002369.1_g000021 Rmu_sc0007463.1_g000014
rosa_roxburghii Rroxscaffold_2G00117070
rosa_rugosa Rorug02G0264000
rosa_samantha Rh2AG321000 Rh2BG329300 Rh2DG348700
rosa_wichuraiana Rw2G026010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
AatII GACGTC 1 cut(s) 81
AccII CGCG 2 cut(s) 231, 240
AciI CCGC 7 cut(s) 58, 107, 168, 229, 279, 413, 473
AclWI GGATC 3 cut(s) 74, 98, 384
AcoI YGGCCR 1 cut(s) 43
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 4 cut(s) 63, 285, 532, 533
AgsI TTSAA 6 cut(s) 88, 181, 209, 619, 652, 667
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 5 cut(s) 13, 19, 152, 226, 759
AluI AGCT 5 cut(s) 13, 19, 152, 226, 759
Alw26I GTCTC 1 cut(s) 602
AlwI GGATC 3 cut(s) 74, 98, 384
AlwNI CAGNNNCTG 1 cut(s) 611
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 5 cut(s) 43, 141, 169, 199, 291
ApeKI GCWGC 4 cut(s) 235, 320, 602, 697
ArsI GACNNNNNNTTYG 2 cut(s) 718, 750
AspLEI GCGC 3 cut(s) 186, 240, 363
AspS9I GGNCC 3 cut(s) 141, 159, 199
AsuC2I CCSGG 2 cut(s) 64, 706
AsuHPI GGTGA 1 cut(s) 557
AsuNHI GCTAGC 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 1 cut(s) 159
BanII GRGCYC 1 cut(s) 527
BauI CACGAG 1 cut(s) 458
BbsI GAAGAC 1 cut(s) 251
BbvI GCAGC 4 cut(s) 247, 307, 589, 709
BccI CCATC 2 cut(s) 395, 535
BceAI ACGGC 3 cut(s) 58, 101, 186
BcgI CGANNNNNNTGC 2 cut(s) 270, 304
BciT130I CCWGG 1 cut(s) 197
BcnI CCSGG 2 cut(s) 64, 706
BcoDI GTCTC 1 cut(s) 602
BfaI CTAG 4 cut(s) 24, 470, 711, 729
BfmI CTRYAG 1 cut(s) 603
BfoI RGCGCY 1 cut(s) 364
BisI GCNGC 5 cut(s) 169, 236, 321, 603, 698
BlsI GCNGC 5 cut(s) 170, 237, 322, 604, 699
Bme1390I CCNGG 3 cut(s) 64, 197, 706
Bme18I GGWCC 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 3 cut(s) 141, 159, 199
BmiI GGNNCC 2 cut(s) 194, 345
BmrFI CCNGG 3 cut(s) 64, 197, 706
BmrI ACTGGG 1 cut(s) 23
BmsI GCATC 2 cut(s) 400, 466
BmtI GCTAGC 1 cut(s) 27
BmuI ACTGGG 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 251
BpmI CTGGAG 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 521
BpuMI CCSGG 2 cut(s) 64, 706
Bsa29I ATCGAT 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 3 cut(s) 62, 162, 196
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 285, 532, 533
Bse1I ACTGG 2 cut(s) 29, 161
Bse3DI GCAATG 1 cut(s) 721
BseBI CCWGG 1 cut(s) 197
BseCI ATCGAT 1 cut(s) 384
BseDI CCNNGG 3 cut(s) 62, 162, 196
BseGI GGATG 2 cut(s) 421, 481
BseLI CCNNNNNNNGG 4 cut(s) 63, 285, 532, 533
BseMI GCAATG 1 cut(s) 721
BseMII CTCAG 3 cut(s) 187, 512, 543
BseNI ACTGG 2 cut(s) 29, 161
BseRI GAGGAG 2 cut(s) 327, 644
BseXI GCAGC 4 cut(s) 247, 307, 589, 709
BsgI GTGCAG 1 cut(s) 254
Bsh1236I CGCG 2 cut(s) 231, 240
BshFI GGCC 5 cut(s) 45, 143, 171, 201, 293
BshVI ATCGAT 1 cut(s) 384
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 4 cut(s) 64, 341, 364, 705
BslFI GGGAC 1 cut(s) 739
BslI CCNNNNNNNGG 4 cut(s) 63, 285, 532, 533
BsmAI GTCTC 1 cut(s) 602
BsmFI GGGAC 1 cut(s) 739
BsnI GGCC 5 cut(s) 45, 143, 171, 201, 293
BsoBI CYCGRG 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 527
Bsp143I GATC 5 cut(s) 66, 103, 376, 381, 584
Bsp19I CCATGG 1 cut(s) 162
BspACI CCGC 7 cut(s) 58, 107, 168, 229, 279, 413, 473
BspANI GGCC 5 cut(s) 45, 143, 171, 201, 293
BspCNI CTCAG 3 cut(s) 186, 513, 544
BspDI ATCGAT 1 cut(s) 384
BspFNI CGCG 2 cut(s) 231, 240
BspLI GGNNCC 2 cut(s) 194, 345
BspMAI CTGCAG 1 cut(s) 607
BspOI GCTAGC 1 cut(s) 27
BspPI GGATC 3 cut(s) 74, 98, 384
BsrDI GCAATG 1 cut(s) 721
BsrI ACTGG 2 cut(s) 29, 161
BssECI CCNNGG 3 cut(s) 62, 162, 196
BssMI GATC 5 cut(s) 66, 103, 376, 381, 584
BssNI GRCGYC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 458
BssT1I CCWWGG 1 cut(s) 162
Bst2BI CACGAG 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 2 cut(s) 613, 755
Bst6I CTCTTC 2 cut(s) 251, 446
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 4 cut(s) 21, 25, 224, 233
BstDEI CTNAG 3 cut(s) 173, 521, 552
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 2 cut(s) 421, 481
BstFNI CGCG 2 cut(s) 231, 240
BstH2I RGCGCY 1 cut(s) 364
BstHHI GCGC 3 cut(s) 186, 240, 363
BstKTI GATC 5 cut(s) 69, 106, 379, 384, 587
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 5 cut(s) 66, 103, 376, 381, 584
BstMWI GCNNNNNNNGC 9 cut(s) 57, 149, 190, 219, 228, 232, 237, 350, 510
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 3 cut(s) 62, 195, 704
BstSFI CTRYAG 1 cut(s) 603
BstUI CGCG 2 cut(s) 231, 240
BstV1I GCAGC 4 cut(s) 247, 307, 589, 709
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 2 cut(s) 66, 376
BstYI RGATCY 2 cut(s) 66, 376
Bsu15I ATCGAT 1 cut(s) 384
BsuRI GGCC 5 cut(s) 45, 143, 171, 201, 293
BsuTUI ATCGAT 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 2 cut(s) 421, 481
BtsIMutI CAGTG 1 cut(s) 154
Cac8I GCNNGC 4 cut(s) 21, 25, 224, 233
CaiI CAGNNNCTG 1 cut(s) 611
CfoI GCGC 3 cut(s) 186, 240, 363
Cfr13I GGNCC 3 cut(s) 141, 159, 199
ClaI ATCGAT 1 cut(s) 384
CviAII CATG 2 cut(s) 163, 428
DdeI CTNAG 3 cut(s) 173, 521, 552
DpnI GATC 5 cut(s) 68, 105, 378, 383, 586
DpnII GATC 5 cut(s) 66, 103, 376, 381, 584
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 43
Eam1104I CTCTTC 2 cut(s) 251, 446
EarI CTCTTC 2 cut(s) 251, 446
EciI GGCGGA 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 527
Eco47I GGWCC 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 527
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 2 cut(s) 166, 431
FaiI YATR 4 cut(s) 164, 188, 429, 497
FaqI GGGAC 1 cut(s) 739
FatI CATG 2 cut(s) 162, 427
FauI CCCGC 1 cut(s) 65
Fnu4HI GCNGC 5 cut(s) 169, 236, 321, 603, 698
FokI GGATG 2 cut(s) 428, 488
FriOI GRGCYC 1 cut(s) 527
Fsp4HI GCNGC 5 cut(s) 169, 236, 321, 603, 698
FspBI CTAG 4 cut(s) 24, 470, 711, 729
GlaI GCGC 3 cut(s) 185, 239, 362
GluI GCNGC 5 cut(s) 169, 236, 321, 603, 698
GsuI CTGGAG 1 cut(s) 179
HaeII RGCGCY 1 cut(s) 364
HaeIII GGCC 5 cut(s) 45, 143, 171, 201, 293
HapII CCGG 4 cut(s) 64, 341, 364, 705
HhaI GCGC 3 cut(s) 186, 240, 363
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 166, 431
Hin6I GCGC 3 cut(s) 184, 238, 361
HinP1I GCGC 3 cut(s) 184, 238, 361
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 6 cut(s) 99, 329, 369, 466, 548, 577
HpaII CCGG 4 cut(s) 64, 341, 364, 705
HphI GGTGA 1 cut(s) 557
Hpy188I TCNGA 7 cut(s) 328, 348, 381, 553, 576, 582, 589
Hpy188III TCNNGA 2 cut(s) 271, 460
Hpy99I CGWCG 3 cut(s) 80, 221, 358
HpyAV CCTTC 5 cut(s) 203, 439, 526, 613, 661
HpyCH4III ACNGT 2 cut(s) 613, 755
HpyCH4IV ACGT 2 cut(s) 78, 216
HpyCH4V TGCA 3 cut(s) 7, 235, 605
HpyF10VI GCNNNNNNNGC 9 cut(s) 57, 149, 190, 219, 228, 232, 237, 350, 510
HpyF3I CTNAG 3 cut(s) 173, 521, 552
HpySE526I ACGT 2 cut(s) 78, 216
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 166, 431
HspAI GCGC 3 cut(s) 184, 238, 361
Kzo9I GATC 5 cut(s) 66, 103, 376, 381, 584
LmnI GCTCC 4 cut(s) 198, 231, 349, 424
Lsp1109I GCAGC 4 cut(s) 247, 307, 589, 709
LweI GCATC 2 cut(s) 400, 466
MaeI CTAG 4 cut(s) 24, 470, 711, 729
MaeII ACGT 2 cut(s) 78, 216
MaeIII GTNAC 1 cut(s) 404
MalI GATC 5 cut(s) 68, 105, 378, 383, 586
MboI GATC 5 cut(s) 66, 103, 376, 381, 584
MboII GAAGA 7 cut(s) 256, 268, 401, 410, 463, 475, 605
MflI RGATCY 2 cut(s) 66, 376
MhlI GDGCHC 1 cut(s) 527
MluCI AATT 1 cut(s) 558
MlyI GAGTC 2 cut(s) 108, 586
MmeI TCCRAC 1 cut(s) 560
MspI CCGG 4 cut(s) 64, 341, 364, 705
MspR9I CCNGG 3 cut(s) 64, 197, 706
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 2 cut(s) 231, 240
MwoI GCNNNNNNNGC 9 cut(s) 57, 149, 190, 219, 228, 232, 237, 350, 510
NciI CCSGG 2 cut(s) 64, 706
NcoI CCATGG 1 cut(s) 162
NdeII GATC 5 cut(s) 66, 103, 376, 381, 584
NheI GCTAGC 1 cut(s) 23
NlaIII CATG 2 cut(s) 166, 431
NlaIV GGNNCC 2 cut(s) 194, 345
PaeR7I CTCGAG 1 cut(s) 269
PfeI GAWTC 4 cut(s) 329, 369, 466, 548
PflFI GACNNNGTC 1 cut(s) 706
PkrI GCNGC 5 cut(s) 170, 237, 322, 604, 699
PleI GAGTC 2 cut(s) 107, 585
PpsI GAGTC 2 cut(s) 107, 585
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 2 cut(s) 194, 345
PspPI GGNCC 3 cut(s) 141, 159, 199
PstI CTGCAG 1 cut(s) 607
PstNI CAGNNNCTG 1 cut(s) 611
PsuI RGATCY 2 cut(s) 66, 376
PsyI GACNNNGTC 1 cut(s) 706
SatI GCNGC 5 cut(s) 169, 236, 321, 603, 698
Sau3AI GATC 5 cut(s) 66, 103, 376, 381, 584
Sau96I GGNCC 3 cut(s) 141, 159, 199
SchI GAGTC 2 cut(s) 108, 586
ScrFI CCNGG 3 cut(s) 64, 197, 706
SduI GDGCHC 1 cut(s) 527
SfaNI GCATC 2 cut(s) 400, 466
SfcI CTRYAG 1 cut(s) 603
Sfr274I CTCGAG 1 cut(s) 269
SinI GGWCC 1 cut(s) 159
SlaI CTCGAG 1 cut(s) 269
SmlI CTYRAG 2 cut(s) 14, 269
SmoI CTYRAG 2 cut(s) 14, 269
Sse9I AATT 1 cut(s) 558
SsiI CCGC 7 cut(s) 58, 107, 168, 229, 279, 413, 473
SspMI CTAG 4 cut(s) 24, 470, 711, 729
StyD4I CCNGG 3 cut(s) 62, 195, 704
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 613, 755
TaiI ACGT 2 cut(s) 81, 219
TaqI TCGA 5 cut(s) 102, 123, 270, 384, 530
TaqII GACCGA 1 cut(s) 263
TasI AATT 1 cut(s) 558
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 4 cut(s) 329, 369, 466, 548
TscAI CASTG 1 cut(s) 161
TseI GCWGC 4 cut(s) 235, 320, 602, 697
TspDTI ATGAA 2 cut(s) 402, 411
TspRI CASTG 1 cut(s) 161
Tth111I GACNNNGTC 1 cut(s) 706
VpaK11BI GGWCC 1 cut(s) 159
XhoI CTCGAG 1 cut(s) 269
XspI CTAG 4 cut(s) 24, 470, 711, 729
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.