Rroxscaffold_2G00117070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014299
Physical Location & Seq
Reverse (-)
44519535 .. 44523827
4293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00117070.1

Sequence Viewer

Length: 828 bp
ATGAAAAGCATGGCCTTAAGCCACGAGAAGACCGGTGGCGCCAAAATGGTGGCGCCAAACGAAAACTTCCCGCCCCTCGCTGCCCGCCAATCCACCTTCTTTATAACACGATCCCTTCCCCTTACCCCTCACAATACCAATTGCTCCTATTCTCTACTCCCAATTCTGAACACAACACCCAAAGCCGCCATGGTTCTGAAGCTCAAGTTAGCCAGTCCAGCCAAGTTCTACGGCAGCAGCCTCCCGCGCCCTCGGATCTACACGGACGTCAAGTTCAATGACGAACGGGTCGACCCGCCTGTAGCCGTCATGGATCCGTTTCTGGCCTGGGCCAACGAGGCCCACTGGTCCATGGGCGGCCTCAGCTTCAAGCGCCTCCGCCTCCAGGGTCGGATCGAAGGCCACGTCGGCAAACTCCGCGCCGAGCGGGAAAAGGCGGAGGACAGGAAGCAAAAGAGCAAGAGGGCTTCTTCCGATTCCCCTCCTTCTGCTCCGGTTGCGACTAAGCGCCGGAGATTTCTGACCTTGATTGATGATGATGAAGATGAAGATGATGAGGAGGAGGAAGATCTGGAGGTGGTGAGGGGGAAGAGGCTTGTGAAGAAGCTGGCCGATGAGTTCGACAGGGTGGCTGATGCGGAGGAGGAGACGGTGGCTTCAAGGACTCGGAGCCGGAAATTGGAAGTGGATGACGGGATTGAGACGGAGACTCAGACTGTGATGCAGGTGGTAAAGGAGGTAAATAAGTTGAGTTTGAAGGGCAAAAAGTTGAAGAAGAGGAAAAGCAAAGGACCCAGGACTTCGCCCAGATTGGCAAACCGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

30.98

Weight (kDa)

9.68

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52270 AT4G28310
fragaria_vesca FvH4_6g26250
malus_domestica MD17G1239900.v1.1
prunus_persica Prupe.3G132500_v2.0.a1
pyrus_communis pycom09g16430 pycom17g24320
rosa_chinensis RchiOBHm_Chr2g0126621
rosa_laevigata RLG00000018914
rosa_multiflora Rmu_sc0002369.1_g000021 Rmu_sc0007463.1_g000014
rosa_roxburghii Rroxscaffold_2G00117070
rosa_rugosa Rorug02G0264000
rosa_samantha Rh2AG321000 Rh2BG329300 Rh2DG348700
rosa_wichuraiana Rw2G026010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 104
AarI CACCTGC 1 cut(s) 715
AasI GACNNNNNNGTC 1 cut(s) 287
AatII GACGTC 1 cut(s) 270
Acc36I ACCTGC 1 cut(s) 715
AccB1I GGYRCC 2 cut(s) 38, 52
AccBSI CCGCTC 1 cut(s) 427
AccI GTMKAC 1 cut(s) 291
AccII CGCG 2 cut(s) 247, 420
AclWI GGATC 5 cut(s) 105, 263, 308, 321, 401
AcoI YGGCCR 1 cut(s) 609
AcuI CTGAAG 1 cut(s) 218
AcyI GRCGYC 3 cut(s) 39, 53, 267
AfiI CCNNNNNNNGG 2 cut(s) 385, 679
AflII CTTAAG 1 cut(s) 16
AgeI ACCGGT 1 cut(s) 32
AgsI TTSAA 5 cut(s) 277, 370, 660, 757, 772
AjiI CACGTC 1 cut(s) 406
AjnI CCWGG 3 cut(s) 326, 384, 794
AloI GAACNNNNNNTCC 2 cut(s) 257, 289
AluBI AGCT 4 cut(s) 202, 366, 607, 825
AluI AGCT 4 cut(s) 202, 366, 607, 825
Alw26I GTCTC 3 cut(s) 641, 695, 701
AlwI GGATC 5 cut(s) 105, 263, 308, 321, 401
AoxI GGCC 7 cut(s) 12, 324, 330, 339, 358, 400, 609
ApeKI GCWGC 3 cut(s) 80, 234, 237
ArsI GACNNNNNNTTYG 2 cut(s) 390, 422
AsiGI ACCGGT 1 cut(s) 32
AspLEI GCGC 6 cut(s) 41, 55, 249, 375, 422, 510
AspS9I GGNCC 4 cut(s) 330, 340, 348, 791
AsuHPI GGTGA 1 cut(s) 592
AvaII GGWCC 2 cut(s) 348, 791
BamHI GGATCC 1 cut(s) 313
BanI GGYRCC 2 cut(s) 38, 52
BauI CACGAG 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 35
BbvCI CCTCAGC 1 cut(s) 362
BbvI GCAGC 3 cut(s) 67, 246, 249
BceAI ACGGC 2 cut(s) 247, 290
BciT130I CCWGG 3 cut(s) 328, 386, 796
BcoDI GTCTC 3 cut(s) 641, 695, 701
BfmI CTRYAG 1 cut(s) 300
BfoI RGCGCY 4 cut(s) 42, 56, 376, 511
BfrI CTTAAG 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 715
BglI GCCNNNNNGGC 2 cut(s) 338, 408
BglII AGATCT 1 cut(s) 568
BisI GCNGC 5 cut(s) 81, 186, 235, 238, 358
BlsI GCNGC 5 cut(s) 82, 187, 236, 239, 359
Bme1390I CCNGG 3 cut(s) 328, 386, 796
Bme18I GGWCC 2 cut(s) 348, 791
BmgBI CACGTC 1 cut(s) 406
BmgT120I GGNCC 4 cut(s) 330, 340, 348, 791
BmiI GGNNCC 5 cut(s) 40, 54, 315, 671, 793
BmrFI CCNGG 3 cut(s) 328, 386, 796
BmsI GCATC 2 cut(s) 625, 711
BpiI GAAGAC 1 cut(s) 35
BpmI CTGGAG 2 cut(s) 368, 593
Bpu10I CCTNAGC 1 cut(s) 362
BpuEI CTTGAG 1 cut(s) 188
BsaHI GRCGYC 3 cut(s) 39, 53, 267
BsaJI CCNNGG 6 cut(s) 189, 251, 327, 351, 385, 794
BsaWI WCCGGW 2 cut(s) 32, 493
Bsc4I CCNNNNNNNGG 2 cut(s) 385, 679
Bse118I RCCGGY 1 cut(s) 32
Bse1I ACTGG 2 cut(s) 213, 350
BseBI CCWGG 3 cut(s) 328, 386, 796
BseDI CCNNGG 6 cut(s) 189, 251, 327, 351, 385, 794
BseGI GGATG 1 cut(s) 694
BseLI CCNNNNNNNGG 2 cut(s) 385, 679
BseMII CTCAG 2 cut(s) 376, 725
BseNI ACTGG 2 cut(s) 213, 350
BseRI GAGGAG 4 cut(s) 572, 575, 656, 659
BseXI GCAGC 3 cut(s) 67, 246, 249
Bsh1236I CGCG 2 cut(s) 247, 420
BshFI GGCC 7 cut(s) 14, 326, 332, 341, 360, 402, 611
BshNI GGYRCC 2 cut(s) 38, 52
BshTI ACCGGT 1 cut(s) 32
BsiSI CCGG 4 cut(s) 33, 494, 511, 673
BslI CCNNNNNNNGG 2 cut(s) 385, 679
BsmAI GTCTC 3 cut(s) 641, 695, 701
BsmBI CGTCTC 2 cut(s) 641, 695
BsnI GGCC 7 cut(s) 14, 326, 332, 341, 360, 402, 611
Bsp143I GATC 5 cut(s) 110, 255, 313, 393, 568
Bsp19I CCATGG 2 cut(s) 189, 351
BspANI GGCC 7 cut(s) 14, 326, 332, 341, 360, 402, 611
BspCNI CTCAG 2 cut(s) 375, 724
BspFNI CGCG 2 cut(s) 247, 420
BspLI GGNNCC 5 cut(s) 40, 54, 315, 671, 793
BspMI ACCTGC 1 cut(s) 715
BspPI GGATC 5 cut(s) 105, 263, 308, 321, 401
BspT107I GGYRCC 2 cut(s) 38, 52
BspTI CTTAAG 1 cut(s) 16
BsrBI CCGCTC 1 cut(s) 427
BsrFI RCCGGY 1 cut(s) 32
BsrI ACTGG 2 cut(s) 213, 350
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 6 cut(s) 189, 251, 327, 351, 385, 794
BssMI GATC 5 cut(s) 110, 255, 313, 393, 568
BssNI GRCGYC 3 cut(s) 39, 53, 267
BssSI CACGAG 1 cut(s) 23
BssT1I CCWWGG 2 cut(s) 189, 351
Bst2BI CACGAG 1 cut(s) 23
Bst2UI CCWGG 3 cut(s) 328, 386, 796
Bst4CI ACNGT 3 cut(s) 652, 718, 821
Bst6I CTCTTC 2 cut(s) 584, 770
BstACI GRCGYC 3 cut(s) 39, 53, 267
BstAFI CTTAAG 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 85, 609
BstDEI CTNAG 3 cut(s) 362, 504, 711
BstDSI CCRYGG 2 cut(s) 189, 351
BstF5I GGATG 1 cut(s) 694
BstFNI CGCG 2 cut(s) 247, 420
BstH2I RGCGCY 4 cut(s) 42, 56, 376, 511
BstHHI GCGC 6 cut(s) 41, 55, 249, 375, 422, 510
BstKTI GATC 5 cut(s) 113, 258, 316, 396, 571
BstMAI GTCTC 3 cut(s) 641, 695, 701
BstMBI GATC 5 cut(s) 110, 255, 313, 393, 568
BstMWI GCNNNNNNNGC 8 cut(s) 218, 246, 338, 363, 372, 408, 417, 497
BstNI CCWGG 3 cut(s) 328, 386, 796
BstSCI CCNGG 3 cut(s) 326, 384, 794
BstSFI CTRYAG 1 cut(s) 300
BstUI CGCG 2 cut(s) 247, 420
BstV1I GCAGC 3 cut(s) 67, 246, 249
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 3 cut(s) 255, 313, 568
BstXI CCANNNNNNTGG 1 cut(s) 49
BstYI RGATCY 3 cut(s) 255, 313, 568
BsuRI GGCC 7 cut(s) 14, 326, 332, 341, 360, 402, 611
BtgI CCRYGG 2 cut(s) 189, 351
BtrI CACGTC 1 cut(s) 406
BtsCI GGATG 1 cut(s) 694
BtsIMutI CAGTG 1 cut(s) 343
BveI ACCTGC 1 cut(s) 715
Cac8I GCNNGC 2 cut(s) 85, 609
CfoI GCGC 6 cut(s) 41, 55, 249, 375, 422, 510
Cfr10I RCCGGY 1 cut(s) 32
Cfr13I GGNCC 4 cut(s) 330, 340, 348, 791
CspAI ACCGGT 1 cut(s) 32
CviAII CATG 4 cut(s) 10, 190, 310, 352
DdeI CTNAG 3 cut(s) 362, 504, 711
DinI GGCGCC 2 cut(s) 40, 54
DpnI GATC 5 cut(s) 112, 257, 315, 395, 570
DpnII GATC 5 cut(s) 110, 255, 313, 393, 568
DrdI GACNNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 287
EaeI YGGCCR 1 cut(s) 609
Eam1104I CTCTTC 2 cut(s) 584, 770
EarI CTCTTC 2 cut(s) 584, 770
EciI GGCGGA 2 cut(s) 368, 452
Eco130I CCWWGG 2 cut(s) 189, 351
Eco47I GGWCC 2 cut(s) 348, 791
Eco57I CTGAAG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 791
EcoRII CCWGG 3 cut(s) 326, 384, 794
EcoT14I CCWWGG 2 cut(s) 189, 351
EgeI GGCGCC 2 cut(s) 40, 54
EheI GGCGCC 2 cut(s) 40, 54
ErhI CCWWGG 2 cut(s) 189, 351
Esp3I CGTCTC 2 cut(s) 641, 695
FaeI CATG 4 cut(s) 13, 193, 313, 355
FaiI YATR 5 cut(s) 11, 104, 191, 311, 353
FatI CATG 4 cut(s) 9, 189, 309, 351
FauI CCCGC 5 cut(s) 78, 92, 252, 303, 420
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 5 cut(s) 81, 186, 235, 238, 358
FokI GGATG 1 cut(s) 701
Fsp4HI GCNGC 5 cut(s) 81, 186, 235, 238, 358
GlaI GCGC 6 cut(s) 40, 54, 248, 374, 421, 509
GluI GCNGC 5 cut(s) 81, 186, 235, 238, 358
GsuI CTGGAG 2 cut(s) 368, 593
HaeII RGCGCY 4 cut(s) 42, 56, 376, 511
HaeIII GGCC 7 cut(s) 14, 326, 332, 341, 360, 402, 611
HapII CCGG 4 cut(s) 33, 494, 511, 673
HhaI GCGC 6 cut(s) 41, 55, 249, 375, 422, 510
Hin1I GRCGYC 3 cut(s) 39, 53, 267
Hin1II CATG 4 cut(s) 13, 193, 313, 355
Hin6I GCGC 6 cut(s) 39, 53, 247, 373, 420, 508
HinP1I GCGC 6 cut(s) 39, 53, 247, 373, 420, 508
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 3 cut(s) 476, 664, 709
HpaII CCGG 4 cut(s) 33, 494, 511, 673
HphI GGTGA 1 cut(s) 592
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 8 cut(s) 168, 198, 255, 393, 475, 522, 669, 714
Hpy188III TCNNGA 1 cut(s) 572
Hpy8I GTNNAC 1 cut(s) 292
Hpy99I CGWCG 1 cut(s) 410
HpyAV CCTTC 5 cut(s) 106, 125, 392, 495, 751
HpyCH4III ACNGT 3 cut(s) 652, 718, 821
HpyCH4IV ACGT 2 cut(s) 267, 405
HpyCH4V TGCA 1 cut(s) 724
HpyF10VI GCNNNNNNNGC 8 cut(s) 218, 246, 338, 363, 372, 408, 417, 497
HpyF3I CTNAG 3 cut(s) 362, 504, 711
HpySE526I ACGT 2 cut(s) 267, 405
Hsp92I GRCGYC 3 cut(s) 39, 53, 267
Hsp92II CATG 4 cut(s) 13, 193, 313, 355
HspAI GCGC 6 cut(s) 39, 53, 247, 373, 420, 508
KasI GGCGCC 2 cut(s) 38, 52
Kzo9I GATC 5 cut(s) 110, 255, 313, 393, 568
LmnI GCTCC 3 cut(s) 149, 496, 669
Lsp1109I GCAGC 3 cut(s) 67, 246, 249
LweI GCATC 2 cut(s) 625, 711
MaeII ACGT 2 cut(s) 267, 405
MalI GATC 5 cut(s) 112, 257, 315, 395, 570
MbiI CCGCTC 1 cut(s) 427
MboI GATC 5 cut(s) 110, 255, 313, 393, 568
MboII GAAGA 9 cut(s) 40, 462, 554, 560, 578, 601, 613, 784, 787
MfeI CAATTG 1 cut(s) 139
MflI RGATCY 3 cut(s) 255, 313, 568
MluCI AATT 3 cut(s) 139, 162, 677
Mly113I GGCGCC 2 cut(s) 39, 53
MlyI GAGTC 2 cut(s) 658, 703
MmeI TCCRAC 1 cut(s) 371
MseI TTAA 1 cut(s) 17
MspCI CTTAAG 1 cut(s) 16
MspI CCGG 4 cut(s) 33, 494, 511, 673
MspR9I CCNGG 3 cut(s) 328, 386, 796
MunI CAATTG 1 cut(s) 139
MvaI CCWGG 3 cut(s) 328, 386, 796
MvnI CGCG 2 cut(s) 247, 420
MwoI GCNNNNNNNGC 8 cut(s) 218, 246, 338, 363, 372, 408, 417, 497
NarI GGCGCC 2 cut(s) 39, 53
NcoI CCATGG 2 cut(s) 189, 351
NdeII GATC 5 cut(s) 110, 255, 313, 393, 568
NlaIII CATG 4 cut(s) 13, 193, 313, 355
NlaIV GGNNCC 5 cut(s) 40, 54, 315, 671, 793
NmeAIII GCCGAG 1 cut(s) 448
PaqCI CACCTGC 1 cut(s) 715
PcsI WCGNNNNNNNCGW 2 cut(s) 288, 402
PfeI GAWTC 1 cut(s) 476
PinAI ACCGGT 1 cut(s) 32
PkrI GCNGC 5 cut(s) 82, 187, 236, 239, 359
PleI GAGTC 2 cut(s) 658, 703
PluTI GGCGCC 2 cut(s) 42, 56
PpsI GAGTC 2 cut(s) 658, 703
PpuMI RGGWCCY 1 cut(s) 791
PsiI TTATAA 1 cut(s) 104
Psp5II RGGWCCY 1 cut(s) 791
Psp6I CCWGG 3 cut(s) 326, 384, 794
PspGI CCWGG 3 cut(s) 326, 384, 794
PspN4I GGNNCC 5 cut(s) 40, 54, 315, 671, 793
PspPI GGNCC 4 cut(s) 330, 340, 348, 791
PspPPI RGGWCCY 1 cut(s) 791
PsuI RGATCY 3 cut(s) 255, 313, 568
SalI GTCGAC 1 cut(s) 290
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 5 cut(s) 81, 186, 235, 238, 358
Sau3AI GATC 5 cut(s) 110, 255, 313, 393, 568
Sau96I GGNCC 4 cut(s) 330, 340, 348, 791
SchI GAGTC 2 cut(s) 658, 703
ScrFI CCNGG 3 cut(s) 328, 386, 796
SfaNI GCATC 2 cut(s) 625, 711
SfcI CTRYAG 1 cut(s) 300
SfiI GGCCNNNNNGGCC 1 cut(s) 338
SfoI GGCGCC 2 cut(s) 40, 54
SinI GGWCC 2 cut(s) 348, 791
SmlI CTYRAG 2 cut(s) 16, 203
SmoI CTYRAG 2 cut(s) 16, 203
Sse9I AATT 3 cut(s) 139, 162, 677
SspDI GGCGCC 2 cut(s) 38, 52
StyD4I CCNGG 3 cut(s) 326, 384, 794
StyI CCWWGG 2 cut(s) 189, 351
TaaI ACNGT 3 cut(s) 652, 718, 821
TaiI ACGT 2 cut(s) 270, 408
TaqI TCGA 3 cut(s) 291, 396, 621
TasI AATT 3 cut(s) 139, 162, 677
TauI GCSGC 2 cut(s) 188, 360
TfiI GAWTC 1 cut(s) 476
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 1 cut(s) 350
TseI GCWGC 3 cut(s) 80, 234, 237
TspDTI ATGAA 3 cut(s) 17, 555, 561
TspGWI ACGGA 3 cut(s) 278, 306, 719
TspRI CASTG 1 cut(s) 350
Vha464I CTTAAG 1 cut(s) 16
VpaK11BI GGWCC 2 cut(s) 348, 791
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 291
ZraI GACGTC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.