RLG00000018914

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014299
Physical Location & Seq
Forward (+)
42746420 .. 42747659
1240 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018914

Sequence Viewer

Length: 807 bp
ATGGACCTCCAACGACCTCCCCGTGAACCTTCGACGACCGGCGAGTGGCGCCAAAATGGTGGCGCCAAACGAAAACTTCCCGCCCCTCACTGCGCGCCACTCCACCTTCTTTATAACACGACCCCTTCACCTTACCCCTCACAATATCAATTGCTCCTATTCTCTACACCCAAAGCCGCCATGGTTCTAAAGCTCAAGTTAGCCAGTCCGGCCAAGTTCTACGGTGGCAGCCTCCCGCGCCCTCGGATCTATACGGACGTCAAGTTCAATGACGAACGGGTCGACCCGCCTGTAGCCGTCATGGATCCGTTTCTGGCCTGGGCCAACGAGGCCCACTGGTCCATGGGCGGCCTCAGCTTCAAGCGCCTCCGCCTCCAGGGCCGGATCGAAGGCCACGTCGGCAAACTCCGCGCCGAGCGGGAAAAGACCGAGGACAGGAAGCAAAAGAGCAAGAGGGCTTCTGCCGATTCGCCTCCTTCGGCTCCGATTGCAAGCAAGCGCCGGAGATTCCTGGCCTTGATTGATGAAGATGAAGAGGAGGAGGAAGATCTGGAGGTCGTGAGGGGGAAGAGGCTTGTGAAGAAGCTGGCCGATGAGTTCGATAGGGTGGCTGATGCGGAGGAGGAGACGGTGGCTTCAAGGACTCGGAGCCGGAAATTGGAAGTGGATGACGGGATTGAGACGGAGACTCAGACTGTGACGCAGGTGGCAAAGGAGGTAAATAAGTTGAGTTTGAAGGGCAAAAAGTTGAAGAAGCGGAAAAGCAAGGGACCAAGGACTTCGCCCAGATTGGCAAACCGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

30.33

Weight (kDa)

9.89

Isoelectric Point (pI)

55.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52270 AT4G28310
fragaria_vesca FvH4_6g26250
malus_domestica MD17G1239900.v1.1
prunus_persica Prupe.3G132500_v2.0.a1
pyrus_communis pycom09g16430 pycom17g24320
rosa_chinensis RchiOBHm_Chr2g0126621
rosa_laevigata RLG00000018914
rosa_multiflora Rmu_sc0002369.1_g000021 Rmu_sc0007463.1_g000014
rosa_roxburghii Rroxscaffold_2G00117070
rosa_rugosa Rorug02G0264000
rosa_samantha Rh2AG321000 Rh2BG329300 Rh2DG348700
rosa_wichuraiana Rw2G026010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 114
AarI CACCTGC 1 cut(s) 694
AasI GACNNNNNNGTC 1 cut(s) 278
AatII GACGTC 1 cut(s) 261
Acc36I ACCTGC 1 cut(s) 694
AccB1I GGYRCC 2 cut(s) 48, 62
AccBSI CCGCTC 1 cut(s) 418
AccI GTMKAC 1 cut(s) 282
AccII CGCG 3 cut(s) 95, 238, 411
AclWI GGATC 4 cut(s) 254, 299, 312, 392
AcoI YGGCCR 2 cut(s) 210, 588
AcyI GRCGYC 3 cut(s) 49, 63, 258
AfiI CCNNNNNNNGG 4 cut(s) 45, 376, 435, 658
AgsI TTSAA 5 cut(s) 268, 361, 639, 736, 751
AjiI CACGTC 1 cut(s) 397
AjnI CCWGG 3 cut(s) 317, 375, 510
AloI GAACNNNNNNTCC 2 cut(s) 248, 280
AluBI AGCT 4 cut(s) 193, 357, 586, 804
AluI AGCT 4 cut(s) 193, 357, 586, 804
Alw26I GTCTC 3 cut(s) 620, 674, 680
AlwI GGATC 4 cut(s) 254, 299, 312, 392
AoxI GGCC 9 cut(s) 210, 315, 321, 330, 349, 379, 391, 513, 588
ApeKI GCWGC 1 cut(s) 228
ArsI GACNNNNNNTTYG 2 cut(s) 381, 413
AspLEI GCGC 8 cut(s) 51, 65, 95, 97, 240, 366, 413, 501
AspS9I GGNCC 6 cut(s) 4, 321, 331, 339, 379, 770
AsuHPI GGTGA 1 cut(s) 120
AvaII GGWCC 3 cut(s) 4, 339, 770
BamHI GGATCC 1 cut(s) 304
BanI GGYRCC 2 cut(s) 48, 62
BbvCI CCTCAGC 1 cut(s) 353
BbvI GCAGC 1 cut(s) 240
BceAI ACGGC 1 cut(s) 281
BciT130I CCWGG 3 cut(s) 319, 377, 512
BcoDI GTCTC 3 cut(s) 620, 674, 680
BfmI CTRYAG 1 cut(s) 291
BfoI RGCGCY 4 cut(s) 52, 66, 367, 502
BfuAI ACCTGC 1 cut(s) 694
BglI GCCNNNNNGGC 4 cut(s) 209, 329, 378, 399
BglII AGATCT 1 cut(s) 547
BisI GCNGC 3 cut(s) 177, 229, 349
BlsI GCNGC 3 cut(s) 178, 230, 350
Bme1390I CCNGG 3 cut(s) 319, 377, 512
Bme18I GGWCC 3 cut(s) 4, 339, 770
BmgBI CACGTC 1 cut(s) 397
BmgT120I GGNCC 6 cut(s) 4, 321, 331, 339, 379, 770
BmiI GGNNCC 6 cut(s) 50, 64, 306, 483, 650, 771
BmrFI CCNGG 3 cut(s) 319, 377, 512
BmsI GCATC 1 cut(s) 604
BpmI CTGGAG 2 cut(s) 359, 572
Bpu10I CCTNAGC 1 cut(s) 353
BpuEI CTTGAG 1 cut(s) 179
BsaHI GRCGYC 3 cut(s) 49, 63, 258
BsaJI CCNNGG 7 cut(s) 180, 242, 318, 342, 376, 429, 773
Bsc4I CCNNNNNNNGG 4 cut(s) 45, 376, 435, 658
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 2 cut(s) 204, 341
BseBI CCWGG 3 cut(s) 319, 377, 512
BseDI CCNNGG 7 cut(s) 180, 242, 318, 342, 376, 429, 773
BseGI GGATG 1 cut(s) 673
BseLI CCNNNNNNNGG 4 cut(s) 45, 376, 435, 658
BseMII CTCAG 2 cut(s) 367, 704
BseNI ACTGG 2 cut(s) 204, 341
BsePI GCGCGC 1 cut(s) 93
BseRI GAGGAG 4 cut(s) 551, 554, 635, 638
BseXI GCAGC 1 cut(s) 240
Bsh1236I CGCG 3 cut(s) 95, 238, 411
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 9 cut(s) 212, 317, 323, 332, 351, 381, 393, 515, 590
BshNI GGYRCC 2 cut(s) 48, 62
BsiEI CGRYCG 1 cut(s) 39
BsiSI CCGG 5 cut(s) 39, 209, 382, 502, 652
BslFI GGGAC 1 cut(s) 783
BslI CCNNNNNNNGG 4 cut(s) 45, 376, 435, 658
BsmAI GTCTC 3 cut(s) 620, 674, 680
BsmBI CGTCTC 2 cut(s) 620, 674
BsmFI GGGAC 1 cut(s) 783
BsnI GGCC 9 cut(s) 212, 317, 323, 332, 351, 381, 393, 515, 590
Bsp143I GATC 4 cut(s) 246, 304, 384, 547
Bsp19I CCATGG 2 cut(s) 180, 342
BspANI GGCC 9 cut(s) 212, 317, 323, 332, 351, 381, 393, 515, 590
BspCNI CTCAG 2 cut(s) 366, 703
BspFNI CGCG 3 cut(s) 95, 238, 411
BspLI GGNNCC 6 cut(s) 50, 64, 306, 483, 650, 771
BspMI ACCTGC 1 cut(s) 694
BspPI GGATC 4 cut(s) 254, 299, 312, 392
BspT107I GGYRCC 2 cut(s) 48, 62
BsrBI CCGCTC 1 cut(s) 418
BsrFI RCCGGY 1 cut(s) 38
BsrI ACTGG 2 cut(s) 204, 341
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 7 cut(s) 180, 242, 318, 342, 376, 429, 773
BssHII GCGCGC 1 cut(s) 93
BssMI GATC 4 cut(s) 246, 304, 384, 547
BssNI GRCGYC 3 cut(s) 49, 63, 258
BssT1I CCWWGG 3 cut(s) 180, 342, 773
Bst2UI CCWGG 3 cut(s) 319, 377, 512
Bst4CI ACNGT 4 cut(s) 224, 631, 697, 800
Bst6I CTCTTC 2 cut(s) 528, 563
BstACI GRCGYC 3 cut(s) 49, 63, 258
BstC8I GCNNGC 4 cut(s) 95, 493, 497, 588
BstDEI CTNAG 2 cut(s) 353, 690
BstDSI CCRYGG 2 cut(s) 180, 342
BstF5I GGATG 1 cut(s) 673
BstFNI CGCG 3 cut(s) 95, 238, 411
BstH2I RGCGCY 4 cut(s) 52, 66, 367, 502
BstHHI GCGC 8 cut(s) 51, 65, 95, 97, 240, 366, 413, 501
BstKTI GATC 4 cut(s) 249, 307, 387, 550
BstMAI GTCTC 3 cut(s) 620, 674, 680
BstMBI GATC 4 cut(s) 246, 304, 384, 547
BstMCI CGRYCG 1 cut(s) 39
BstNI CCWGG 3 cut(s) 319, 377, 512
BstSCI CCNGG 3 cut(s) 317, 375, 510
BstSFI CTRYAG 1 cut(s) 291
BstUI CGCG 3 cut(s) 95, 238, 411
BstV1I GCAGC 1 cut(s) 240
BstX2I RGATCY 3 cut(s) 246, 304, 547
BstXI CCANNNNNNTGG 1 cut(s) 59
BstYI RGATCY 3 cut(s) 246, 304, 547
BsuRI GGCC 9 cut(s) 212, 317, 323, 332, 351, 381, 393, 515, 590
BtgI CCRYGG 2 cut(s) 180, 342
BtrI CACGTC 1 cut(s) 397
BtsCI GGATG 1 cut(s) 673
BtsI GCAGTG 1 cut(s) 88
BtsIMutI CAGTG 2 cut(s) 88, 334
BveI ACCTGC 1 cut(s) 694
Cac8I GCNNGC 4 cut(s) 95, 493, 497, 588
CfoI GCGC 8 cut(s) 51, 65, 95, 97, 240, 366, 413, 501
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 6 cut(s) 4, 321, 331, 339, 379, 770
CseI GACGC 1 cut(s) 709
CviAII CATG 3 cut(s) 181, 301, 343
DdeI CTNAG 2 cut(s) 353, 690
DinI GGCGCC 2 cut(s) 50, 64
DpnI GATC 4 cut(s) 248, 306, 386, 549
DpnII GATC 4 cut(s) 246, 304, 384, 547
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
EaeI YGGCCR 2 cut(s) 210, 588
Eam1104I CTCTTC 2 cut(s) 528, 563
EarI CTCTTC 2 cut(s) 528, 563
EciI GGCGGA 1 cut(s) 359
Eco130I CCWWGG 3 cut(s) 180, 342, 773
Eco47I GGWCC 3 cut(s) 4, 339, 770
EcoRII CCWGG 3 cut(s) 317, 375, 510
EcoT14I CCWWGG 3 cut(s) 180, 342, 773
EgeI GGCGCC 2 cut(s) 50, 64
EheI GGCGCC 2 cut(s) 50, 64
ErhI CCWWGG 3 cut(s) 180, 342, 773
Esp3I CGTCTC 2 cut(s) 620, 674
FaeI CATG 3 cut(s) 184, 304, 346
FaiI YATR 5 cut(s) 114, 182, 252, 302, 344
FaqI GGGAC 1 cut(s) 783
FatI CATG 3 cut(s) 180, 300, 342
FauI CCCGC 4 cut(s) 88, 243, 294, 411
FblI GTMKAC 1 cut(s) 282
Fnu4HI GCNGC 3 cut(s) 177, 229, 349
FokI GGATG 1 cut(s) 680
Fsp4HI GCNGC 3 cut(s) 177, 229, 349
GlaI GCGC 8 cut(s) 50, 64, 94, 96, 239, 365, 412, 500
GluI GCNGC 3 cut(s) 177, 229, 349
GsuI CTGGAG 2 cut(s) 359, 572
HaeII RGCGCY 4 cut(s) 52, 66, 367, 502
HaeIII GGCC 9 cut(s) 212, 317, 323, 332, 351, 381, 393, 515, 590
HapII CCGG 5 cut(s) 39, 209, 382, 502, 652
HgaI GACGC 1 cut(s) 709
HhaI GCGC 8 cut(s) 51, 65, 95, 97, 240, 366, 413, 501
Hin1I GRCGYC 3 cut(s) 49, 63, 258
Hin1II CATG 3 cut(s) 184, 304, 346
Hin6I GCGC 8 cut(s) 49, 63, 93, 95, 238, 364, 411, 499
HinP1I GCGC 8 cut(s) 49, 63, 93, 95, 238, 364, 411, 499
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 4 cut(s) 467, 507, 643, 688
HpaII CCGG 5 cut(s) 39, 209, 382, 502, 652
HphI GGTGA 1 cut(s) 120
Hpy166II GTNNAC 2 cut(s) 26, 283
Hpy188I TCNGA 4 cut(s) 246, 486, 648, 693
Hpy188III TCNNGA 2 cut(s) 551, 559
Hpy8I GTNNAC 2 cut(s) 26, 283
Hpy99I CGWCG 2 cut(s) 37, 401
HpyAV CCTTC 6 cut(s) 39, 116, 135, 383, 486, 730
HpyCH4III ACNGT 4 cut(s) 224, 631, 697, 800
HpyCH4IV ACGT 2 cut(s) 258, 396
HpyCH4V TGCA 1 cut(s) 491
HpyF3I CTNAG 2 cut(s) 353, 690
HpySE526I ACGT 2 cut(s) 258, 396
Hsp92I GRCGYC 3 cut(s) 49, 63, 258
Hsp92II CATG 3 cut(s) 184, 304, 346
HspAI GCGC 8 cut(s) 49, 63, 93, 95, 238, 364, 411, 499
KasI GGCGCC 2 cut(s) 48, 62
Kzo9I GATC 4 cut(s) 246, 304, 384, 547
LmnI GCTCC 3 cut(s) 159, 487, 648
Lsp1109I GCAGC 1 cut(s) 240
LweI GCATC 1 cut(s) 604
MaeII ACGT 2 cut(s) 258, 396
MaeIII GTNAC 1 cut(s) 697
MalI GATC 4 cut(s) 248, 306, 386, 549
MbiI CCGCTC 1 cut(s) 418
MboI GATC 4 cut(s) 246, 304, 384, 547
MboII GAAGA 6 cut(s) 539, 545, 557, 580, 592, 763
MfeI CAATTG 1 cut(s) 149
MflI RGATCY 3 cut(s) 246, 304, 547
MluCI AATT 2 cut(s) 149, 656
Mly113I GGCGCC 2 cut(s) 49, 63
MlyI GAGTC 2 cut(s) 637, 682
MmeI TCCRAC 1 cut(s) 34
MspI CCGG 5 cut(s) 39, 209, 382, 502, 652
MspR9I CCNGG 3 cut(s) 319, 377, 512
MunI CAATTG 1 cut(s) 149
MvaI CCWGG 3 cut(s) 319, 377, 512
MvnI CGCG 3 cut(s) 95, 238, 411
NarI GGCGCC 2 cut(s) 49, 63
NcoI CCATGG 2 cut(s) 180, 342
NdeII GATC 4 cut(s) 246, 304, 384, 547
NlaIII CATG 3 cut(s) 184, 304, 346
NlaIV GGNNCC 6 cut(s) 50, 64, 306, 483, 650, 771
NmeAIII GCCGAG 1 cut(s) 439
NmuCI GTSAC 1 cut(s) 697
PaqCI CACCTGC 1 cut(s) 694
PauI GCGCGC 1 cut(s) 93
PcsI WCGNNNNNNNCGW 3 cut(s) 19, 279, 393
PfeI GAWTC 2 cut(s) 467, 507
PkrI GCNGC 3 cut(s) 178, 230, 350
PleI GAGTC 2 cut(s) 637, 682
PluTI GGCGCC 2 cut(s) 52, 66
PpsI GAGTC 2 cut(s) 637, 682
PsiI TTATAA 1 cut(s) 114
Psp6I CCWGG 3 cut(s) 317, 375, 510
PspGI CCWGG 3 cut(s) 317, 375, 510
PspN4I GGNNCC 6 cut(s) 50, 64, 306, 483, 650, 771
PspPI GGNCC 6 cut(s) 4, 321, 331, 339, 379, 770
PsuI RGATCY 3 cut(s) 246, 304, 547
PteI GCGCGC 1 cut(s) 93
SalI GTCGAC 1 cut(s) 281
SatI GCNGC 3 cut(s) 177, 229, 349
Sau3AI GATC 4 cut(s) 246, 304, 384, 547
Sau96I GGNCC 6 cut(s) 4, 321, 331, 339, 379, 770
SchI GAGTC 2 cut(s) 637, 682
ScrFI CCNGG 3 cut(s) 319, 377, 512
SfaNI GCATC 1 cut(s) 604
SfcI CTRYAG 1 cut(s) 291
SfiI GGCCNNNNNGGCC 1 cut(s) 329
SfoI GGCGCC 2 cut(s) 50, 64
SinI GGWCC 3 cut(s) 4, 339, 770
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 2 cut(s) 149, 656
SspDI GGCGCC 2 cut(s) 48, 62
StyD4I CCNGG 3 cut(s) 317, 375, 510
StyI CCWWGG 3 cut(s) 180, 342, 773
TaaI ACNGT 4 cut(s) 224, 631, 697, 800
TaiI ACGT 2 cut(s) 261, 399
TaqI TCGA 4 cut(s) 32, 282, 387, 600
TaqII GACCGA 1 cut(s) 443
TasI AATT 2 cut(s) 149, 656
TauI GCSGC 2 cut(s) 179, 351
TfiI GAWTC 2 cut(s) 467, 507
TscAI CASTG 2 cut(s) 95, 341
TseFI GTSAC 1 cut(s) 697
TseI GCWGC 1 cut(s) 228
Tsp45I GTSAC 1 cut(s) 697
TspDTI ATGAA 2 cut(s) 540, 546
TspGWI ACGGA 3 cut(s) 269, 297, 698
TspRI CASTG 2 cut(s) 95, 341
VpaK11BI GGWCC 3 cut(s) 4, 339, 770
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XmiI GTMKAC 1 cut(s) 282
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.