FvH4_6g27620
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
21283487 .. 21286886
3400 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27620.t1

Sequence Viewer

Length: 1191 bp
ATGGAAGCAGAAGACGAGTACAGAAGAAAGGCCCGCGTGGCATTGGTGGCCATTGTTGTCCTCGCTTCCCTCGCCGTCGCTTCCTTACTCGTCGCCTTCAGCTACTACTGCTACATTCGCAACAAGCTCGCCAAGCACCTCAACCACACCAAAGGGGCTGGTGCTGACCTGGAGGGCAAAGGTGGTGTTCCGAATCTGAAAACGGCTGCCGGAGACGGAGTTCAGGTGTTTACATTTAAGCAGCTACATTCGGCGACCGGCGGATTCAGCAAGTCGAATGTGGTTGGGAAAGGTGGGTTCGGGTTGGTGTACCGTGGGGTGCTGCATGATGGGAGGAAAGTTGCTATTAAGTTTATGGACCAAGGAGGGAAGCAGGGAGAAGAAGAATTTGAAATGGAGGTGGAGTTGCTAAGTCGGTTGCGTTCTCCATATTTGCTTCCGTTGCTTGGGTATTGTTCAGATAACAGTCGTAAGCTGTTGGTGTATGAGTTCATGGCCAATGGTGGATTGCAGGAACATTTGTATCCTGTGAGTGGTGGTCCTAATGCCCTCTCCACAAAGTTAGACTGGGAAACCCGGTTGAGAATAGCTCTTGAAGCTGCGAAAGGTTTGGAGTATCTCCATGAACAAGTTAGTCCTCCTGTGATTCACAGAGATTTTAAGAGCAGCAACATTCTCTTGGACAAAACATTCCACGCCAAAGTTTCTGATTTCGGATTGGCCAAACTTGGATCTGACAAAGCTGGGGGTTATGTTTCCACCAGAGTGTTGGGCACACAGGGATATGTTGCCCCTGAGTATGCATTAACAGGGCATCTGACAACTAAATCAGATGTGTACAGTTATGGAGTTGTTCTGTTGGAATTGCTAACTGGCAGAGTTCCAGTTGATATGAAGAGACCCCCTGGAGAAGGTGTTCTTGTTTCTTGGGCTTTACCGCAGCTGACAGATAGGGAGCAGGTTGTACGGATCATGGATCCTGAATTGGAGGGTCAATATTCGATGAAGGACGTCATTCAGGTGGCAGCAATTGCTGCTATGTGTGTACAACCAGAGGCAGATTACAGGCCACTGATGGCAGATGTTGTACAGTCACTGGTTCCGCTTGTGAAGATTCACAGTTCAATCTCAAAGGTAGGCAGAAGTTCTAGTTTGCATGCAACAAAATCACCTACACAGAATTCGGGTTAA

Protein Analysis

397

Amino Acids

43.07

Weight (kDa)

8.7

Isoelectric Point (pI)

30.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 90 - 298 9.2e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 92 - 366 2.1e-44 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012244)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1014
Acc36I ACCTGC 1 cut(s) 949
AccII CGCG 1 cut(s) 36
AciI CCGC 4 cut(s) 34, 261, 938, 1103
AclWI GGATC 4 cut(s) 739, 971, 977, 984
AcoI YGGCCR 3 cut(s) 48, 495, 720
AcsI RAATTY 2 cut(s) 386, 1180
AcuI CTGAAG 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 1011
AfaI GTAC 6 cut(s) 20, 311, 839, 966, 1047, 1089
AfiI CCNNNNNNNGG 3 cut(s) 446, 533, 911
AgsI TTSAA 3 cut(s) 392, 596, 1125
AjnI CCWGG 2 cut(s) 168, 904
AleI CACNNNNGTG 1 cut(s) 764
AloI GAACNNNNNNTCC 4 cut(s) 204, 236, 900, 932
AluBI AGCT 8 cut(s) 102, 127, 244, 475, 590, 599, 743, 943
AluI AGCT 8 cut(s) 102, 127, 244, 475, 590, 599, 743, 943
Alw26I GTCTC 2 cut(s) 207, 892
AlwI GGATC 4 cut(s) 739, 971, 977, 984
AlwNI CAGNNNCTG 1 cut(s) 1096
AoxI GGCC 5 cut(s) 30, 48, 495, 720, 1067
ApeKI GCWGC 8 cut(s) 206, 241, 322, 599, 666, 940, 1025, 1034
ApoI RAATTY 2 cut(s) 386, 1180
Asp700I GAANNNNTTC 1 cut(s) 915
AspS9I GGNCC 3 cut(s) 31, 358, 539
AsuC2I CCSGG 1 cut(s) 577
AsuHPI GGTGA 1 cut(s) 1161
AvaII GGWCC 2 cut(s) 358, 539
BaeGI GKGCMC 1 cut(s) 776
BaeI ACNNNNGTAYC 2 cut(s) 506, 539
BalI TGGCCA 3 cut(s) 50, 497, 722
BamHI GGATCC 1 cut(s) 976
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 8 cut(s) 193, 253, 309, 586, 678, 952, 1021, 1037
BccI CCATC 2 cut(s) 323, 1069
BceAI ACGGC 2 cut(s) 59, 219
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BciT130I CCWGG 2 cut(s) 170, 906
BciVI GTATCC 1 cut(s) 534
BcnI CCSGG 1 cut(s) 577
BcoDI GTCTC 2 cut(s) 207, 892
BfaI CTAG 1 cut(s) 1149
BfuAI ACCTGC 1 cut(s) 949
BfuI GTATCC 1 cut(s) 534
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 8 cut(s) 207, 242, 323, 600, 667, 941, 1026, 1035
BlsI GCNGC 8 cut(s) 208, 243, 324, 601, 668, 942, 1027, 1036
Bme1390I CCNGG 3 cut(s) 170, 577, 906
Bme18I GGWCC 2 cut(s) 358, 539
BmgT120I GGNCC 3 cut(s) 31, 358, 539
BmiI GGNNCC 2 cut(s) 978, 1101
BmrFI CCNGG 3 cut(s) 170, 577, 906
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 1 cut(s) 823
BmuI ACTGGG 1 cut(s) 577
BpiI GAAGAC 1 cut(s) 18
BplI GAGNNNNNCTC 2 cut(s) 574, 606
BpmI CTGGAG 2 cut(s) 191, 927
BpuMI CCSGG 1 cut(s) 577
BsaHI GRCGYC 1 cut(s) 1011
BsaI GGTCTC 1 cut(s) 892
BsaJI CCNNGG 3 cut(s) 313, 361, 904
BsaXI ACNNNNNCTCC 8 cut(s) 204, 210, 234, 240, 389, 419, 900, 930
Bsc4I CCNNNNNNNGG 3 cut(s) 446, 533, 911
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 4 cut(s) 572, 877, 884, 1101
BseBI CCWGG 2 cut(s) 170, 906
BseDI CCNNGG 3 cut(s) 313, 361, 904
BseLI CCNNNNNNNGG 3 cut(s) 446, 533, 911
BseMII CTCAG 1 cut(s) 786
BseNI ACTGG 4 cut(s) 572, 877, 884, 1101
BseSI GKGCMC 1 cut(s) 776
BseXI GCAGC 8 cut(s) 193, 253, 309, 586, 678, 952, 1021, 1037
BseYI CCCAGC 1 cut(s) 743
Bsh1236I CGCG 1 cut(s) 36
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 5 cut(s) 32, 50, 497, 722, 1069
BsiEI CGRYCG 1 cut(s) 258
BsiSI CCGG 3 cut(s) 210, 258, 577
BslI CCNNNNNNNGG 3 cut(s) 446, 533, 911
BsmAI GTCTC 2 cut(s) 207, 892
BsmBI CGTCTC 1 cut(s) 207
BsnI GGCC 5 cut(s) 32, 50, 497, 722, 1069
Bso31I GGTCTC 1 cut(s) 892
Bsp1286I GDGCHC 1 cut(s) 776
Bsp1407I TGTACA 3 cut(s) 837, 1045, 1087
Bsp143I GATC 3 cut(s) 731, 969, 976
BspACI CCGC 4 cut(s) 34, 261, 938, 1103
BspANI GGCC 5 cut(s) 32, 50, 497, 722, 1069
BspCNI CTCAG 1 cut(s) 787
BspFNI CGCG 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 978, 1101
BspMI ACCTGC 1 cut(s) 949
BspPI GGATC 4 cut(s) 739, 971, 977, 984
BspTNI GGTCTC 1 cut(s) 892
BsrFI RCCGGY 1 cut(s) 257
BsrGI TGTACA 3 cut(s) 837, 1045, 1087
BsrI ACTGG 4 cut(s) 572, 877, 884, 1101
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 3 cut(s) 313, 361, 904
BssMI GATC 3 cut(s) 731, 969, 976
BssNI GRCGYC 1 cut(s) 1011
BssT1I CCWWGG 1 cut(s) 361
Bst2UI CCWGG 2 cut(s) 170, 906
Bst4CI ACNGT 5 cut(s) 314, 467, 842, 1092, 1121
Bst6I CTCTTC 1 cut(s) 890
BstACI GRCGYC 1 cut(s) 1011
BstAPI GCANNNNNTGC 2 cut(s) 1031, 1034
BstAUI TGTACA 3 cut(s) 837, 1045, 1087
BstC8I GCNNGC 3 cut(s) 34, 129, 1158
BstDEI CTNAG 2 cut(s) 410, 795
BstDSI CCRYGG 1 cut(s) 313
BstENI CCTNNNNNAGG 1 cut(s) 909
BstFNI CGCG 1 cut(s) 36
BstKTI GATC 3 cut(s) 734, 972, 979
BstMAI GTCTC 2 cut(s) 207, 892
BstMBI GATC 3 cut(s) 731, 969, 976
BstMCI CGRYCG 1 cut(s) 258
BstNI CCWGG 2 cut(s) 170, 906
BstNSI RCATGY 1 cut(s) 1160
BstSCI CCNGG 3 cut(s) 168, 575, 904
BstSLI GKGCMC 1 cut(s) 776
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 8 cut(s) 193, 253, 309, 586, 678, 952, 1021, 1037
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 2 cut(s) 731, 976
BstXI CCANNNNNNTGG 1 cut(s) 769
BstYI RGATCY 2 cut(s) 731, 976
BsuI GTATCC 1 cut(s) 534
BsuRI GGCC 5 cut(s) 32, 50, 497, 722, 1069
BtgI CCRYGG 1 cut(s) 313
BtsIMutI CAGTG 2 cut(s) 1070, 1094
BveI ACCTGC 1 cut(s) 949
Cac8I GCNNGC 3 cut(s) 34, 129, 1158
CaiI CAGNNNCTG 1 cut(s) 1096
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 3 cut(s) 31, 358, 539
Csp6I GTAC 6 cut(s) 19, 310, 838, 965, 1046, 1088
CviAII CATG 5 cut(s) 326, 493, 623, 973, 1157
CviQI GTAC 6 cut(s) 19, 310, 838, 965, 1046, 1088
DdeI CTNAG 2 cut(s) 410, 795
DpnI GATC 3 cut(s) 733, 971, 978
DpnII GATC 3 cut(s) 731, 969, 976
EaeI YGGCCR 3 cut(s) 48, 495, 720
Eam1104I CTCTTC 1 cut(s) 890
EarI CTCTTC 1 cut(s) 890
EciI GGCGGA 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 361
Eco31I GGTCTC 1 cut(s) 892
Eco47I GGWCC 2 cut(s) 358, 539
Eco57I CTGAAG 1 cut(s) 82
EcoNI CCTNNNNNAGG 1 cut(s) 909
EcoRI GAATTC 1 cut(s) 1180
EcoRII CCWGG 2 cut(s) 168, 904
EcoT14I CCWWGG 1 cut(s) 361
EcoT22I ATGCAT 1 cut(s) 805
ErhI CCWWGG 1 cut(s) 361
Esp3I CGTCTC 1 cut(s) 207
FaeI CATG 5 cut(s) 329, 496, 626, 976, 1160
FalI AAGNNNNNCTT 2 cut(s) 903, 935
FatI CATG 5 cut(s) 325, 492, 622, 972, 1156
FauI CCCGC 1 cut(s) 41
Fnu4HI GCNGC 8 cut(s) 207, 242, 323, 600, 667, 941, 1026, 1035
Fsp4HI GCNGC 8 cut(s) 207, 242, 323, 600, 667, 941, 1026, 1035
FspBI CTAG 1 cut(s) 1149
GluI GCNGC 8 cut(s) 207, 242, 323, 600, 667, 941, 1026, 1035
GsaI CCCAGC 1 cut(s) 747
GsuI CTGGAG 2 cut(s) 191, 927
HaeIII GGCC 5 cut(s) 32, 50, 497, 722, 1069
HapII CCGG 3 cut(s) 210, 258, 577
Hin1I GRCGYC 1 cut(s) 1011
Hin1II CATG 5 cut(s) 329, 496, 626, 976, 1160
HinfI GANTC 4 cut(s) 193, 264, 646, 1114
HpaII CCGG 3 cut(s) 210, 258, 577
HphI GGTGA 1 cut(s) 1161
Hpy166II GTNNAC 4 cut(s) 231, 310, 838, 1046
Hpy188I TCNGA 8 cut(s) 192, 198, 460, 709, 716, 736, 819, 832
Hpy188III TCNNGA 2 cut(s) 593, 980
Hpy8I GTNNAC 4 cut(s) 231, 310, 838, 1046
Hpy99I CGWCG 2 cut(s) 80, 95
HpyAV CCTTC 3 cut(s) 106, 905, 1000
HpyCH4III ACNGT 5 cut(s) 314, 467, 842, 1092, 1121
HpyCH4IV ACGT 1 cut(s) 1011
HpyCH4V TGCA 5 cut(s) 325, 511, 803, 1156, 1160
HpyF3I CTNAG 2 cut(s) 410, 795
HpySE526I ACGT 1 cut(s) 1011
Hsp92I GRCGYC 1 cut(s) 1011
Hsp92II CATG 5 cut(s) 329, 496, 626, 976, 1160
Kzo9I GATC 3 cut(s) 731, 969, 976
LmnI GCTCC 1 cut(s) 955
Lsp1109I GCAGC 8 cut(s) 193, 253, 309, 586, 678, 952, 1021, 1037
LweI GCATC 1 cut(s) 823
MaeI CTAG 1 cut(s) 1149
MaeII ACGT 1 cut(s) 1011
MaeIII GTNAC 1 cut(s) 1092
MalI GATC 3 cut(s) 733, 971, 978
MboI GATC 3 cut(s) 731, 969, 976
MboII GAAGA 6 cut(s) 23, 36, 392, 395, 907, 1123
MfeI CAATTG 1 cut(s) 1029
MflI RGATCY 2 cut(s) 731, 976
MhlI GDGCHC 1 cut(s) 776
MlsI TGGCCA 3 cut(s) 50, 497, 722
MluCI AATT 5 cut(s) 386, 863, 983, 1029, 1180
MluNI TGGCCA 3 cut(s) 50, 497, 722
MmeI TCCRAC 1 cut(s) 840
Mox20I TGGCCA 3 cut(s) 50, 497, 722
Mph1103I ATGCAT 1 cut(s) 805
MroXI GAANNNNTTC 1 cut(s) 915
MscI TGGCCA 3 cut(s) 50, 497, 722
MseI TTAA 5 cut(s) 237, 348, 660, 806, 1189
MslI CAYNNNNRTG 2 cut(s) 764, 1019
Msp20I TGGCCA 3 cut(s) 50, 497, 722
MspA1I CMGCKG 1 cut(s) 943
MspI CCGG 3 cut(s) 210, 258, 577
MspR9I CCNGG 3 cut(s) 170, 577, 906
MunI CAATTG 1 cut(s) 1029
MvaI CCWGG 2 cut(s) 170, 906
MvnI CGCG 1 cut(s) 36
NciI CCSGG 1 cut(s) 577
NdeII GATC 3 cut(s) 731, 969, 976
NlaIII CATG 5 cut(s) 329, 496, 626, 976, 1160
NlaIV GGNNCC 2 cut(s) 978, 1101
NmuCI GTSAC 1 cut(s) 1092
NsiI ATGCAT 1 cut(s) 805
NspI RCATGY 1 cut(s) 1160
OliI CACNNNNGTG 1 cut(s) 764
PaeI GCATGC 1 cut(s) 1160
PdmI GAANNNNTTC 1 cut(s) 915
PfeI GAWTC 4 cut(s) 193, 264, 646, 1114
PkrI GCNGC 8 cut(s) 208, 243, 324, 601, 668, 942, 1027, 1036
Psp6I CCWGG 2 cut(s) 168, 904
PspFI CCCAGC 1 cut(s) 743
PspGI CCWGG 2 cut(s) 168, 904
PspN4I GGNNCC 2 cut(s) 978, 1101
PspPI GGNCC 3 cut(s) 31, 358, 539
PstNI CAGNNNCTG 1 cut(s) 1096
PsuI RGATCY 2 cut(s) 731, 976
PvuII CAGCTG 1 cut(s) 943
RsaI GTAC 6 cut(s) 20, 311, 839, 966, 1047, 1089
RsaNI GTAC 6 cut(s) 19, 310, 838, 965, 1046, 1088
RseI CAYNNNNRTG 2 cut(s) 764, 1019
SaqAI TTAA 5 cut(s) 237, 348, 660, 806, 1189
SatI GCNGC 8 cut(s) 207, 242, 323, 600, 667, 941, 1026, 1035
Sau3AI GATC 3 cut(s) 731, 969, 976
Sau96I GGNCC 3 cut(s) 31, 358, 539
ScrFI CCNGG 3 cut(s) 170, 577, 906
SduI GDGCHC 1 cut(s) 776
SfaNI GCATC 1 cut(s) 823
SinI GGWCC 2 cut(s) 358, 539
SmiMI CAYNNNNRTG 2 cut(s) 764, 1019
SphI GCATGC 1 cut(s) 1160
Sse9I AATT 5 cut(s) 386, 863, 983, 1029, 1180
SsiI CCGC 4 cut(s) 34, 261, 938, 1103
SspI AATATT 1 cut(s) 998
SspMI CTAG 1 cut(s) 1149
StyD4I CCNGG 3 cut(s) 168, 575, 904
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 5 cut(s) 314, 467, 842, 1092, 1121
TaiI ACGT 1 cut(s) 1014
TaqI TCGA 2 cut(s) 275, 1001
TasI AATT 5 cut(s) 386, 863, 983, 1029, 1180
TatI WGTACW 4 cut(s) 18, 837, 1045, 1087
TfiI GAWTC 4 cut(s) 193, 264, 646, 1114
Tru1I TTAA 5 cut(s) 237, 348, 660, 806, 1189
Tru9I TTAA 5 cut(s) 237, 348, 660, 806, 1189
TscAI CASTG 2 cut(s) 1077, 1101
TseFI GTSAC 1 cut(s) 1092
TseI GCWGC 8 cut(s) 206, 241, 322, 599, 666, 940, 1025, 1034
Tsp45I GTSAC 1 cut(s) 1092
TspDTI ATGAA 4 cut(s) 481, 639, 908, 1019
TspGWI ACGGA 3 cut(s) 231, 429, 982
TspRI CASTG 2 cut(s) 1077, 1101
VpaK11BI GGWCC 2 cut(s) 358, 539
XagI CCTNNNNNAGG 1 cut(s) 909
XapI RAATTY 2 cut(s) 386, 1180
XceI RCATGY 1 cut(s) 1160
XcmI CCANNNNNNNNNTGG 1 cut(s) 766
XmnI GAANNNNTTC 1 cut(s) 915
XspI CTAG 1 cut(s) 1149
ZraI GACGTC 1 cut(s) 1012
Zsp2I ATGCAT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.