Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029344.1

Orthogroup ID

OG0012244

Physical Location & Seq

Genomic Coordinates Forward (+)

735 .. 6940

Gene Structure 6206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029344.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atggaagcagaggatgagtacagaaggaaggcccgcgtggcattggtggtcattgtggtcctcgcttccctcgccgtcgcttcattactcgtcgcctttagctactactgctacatccgcaacaaggtagccaagcacctcaacaacaacaagagcaacaacaacaagggggctgacttggagggcaaaggtggttttccaaatccgaaaacagctgcgagtgacggagttcaggtcttcacgtttaagcaactacattcggcgactgggggtttcagcaaatcgaatgtggttgggaaaggcggattcgggttggtgtaccgtggggtgctgcataatgggaggaaagttgcaattaagtttatggaccaagcaggaaagcagggagaagaagagtttgaaatggaggtggagttgctaagtcggttgcgttctccatatttgctttcgttgcttgggtattgttcagataacagtcgtaagctgttggtgtatgagtttatggcaaatggtggattgcaggaacatttgtatcctgtcagtggtggtcctattgccctctccacaaacttagactgggaaacccggttgagaatagctcttgaagctgcgaaaggtttggagtatctccatgaacaagttagtcctccagtgatacacagagattttaagagcagcaacattctcttggacaaaacattccatgccaaagtttctgatttcggattggccaaacttggatctgacaaagctggaggttatgtttccaccagagtgttgggcacacagggatatgttgcccctgagtatgcattaacagggcatctgacaactaaatcagatgtgtacagttatggggttgtgctgttggaattgctaacaggcagagttccagttgatatgaagagaccccctggagaaggtgttctcgtttcttgggctttgtcgcatctgacagatagggagcaggttgtacagatcatggatcctgcattggagggagggcctccttcaacagttgctgtggagagttccctaatagatgccattctctcttcttggacttcttcaggtggtggtgacggtggtggtgtagagttggacgaaaccagaggtgaaggtgaacgtgaaggaggagatggacttggtgtaggtgatgtagattcctcagaacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

392

Amino Acids

42.16

Weight (kDa)

5.68

Isoelectric Point (pI)

31.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58690
fragaria_vesca	FvH4_6g27620
malus_domestica	MD17G1265400.v1.1
prunus_persica	Prupe.3G115500_v2.0.a1 Prupe.3G115500_v2.0.a1
pyrus_communis	pycom17g26510
rosa_chinensis	RchiOBHm_Chr2g0130301
rosa_laevigata	RLG00000019133
rosa_multiflora	Rmu_sc0001167.1_g000081 Rmu_sc0001336.1_g000074 Rmu_sc0029344.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114050
rosa_rugosa	Rorug01G0180700 Rorug01G0180800 Rorug02G0291400
rosa_samantha	Rh2CG330200 Rh2DG369400
rosa_wichuraiana	Rw2G027620 Rw5G020570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	958
AccII	CGCG	1 cut(s)	36
AciI	CCGC	3 cut(s)	34, 118, 303
AclWI	GGATC	3 cut(s)	748, 980, 993
AcoI	YGGCCR	1 cut(s)	729
AcuI	CTGAAG	1 cut(s)	1053
AfaI	GTAC	4 cut(s)	20, 320, 848, 975
AfiI	CCNNNNNNNGG	3 cut(s)	124, 542, 920
AgsI	TTSAA	3 cut(s)	401, 605, 1014
AjnI	CCWGG	1 cut(s)	913
AleI	CACNNNNGTG	1 cut(s)	773
AloI	GAACNNNNNNTCC	2 cut(s)	909, 941
AluBI	AGCT	6 cut(s)	102, 215, 484, 599, 608, 752
AluI	AGCT	6 cut(s)	102, 215, 484, 599, 608, 752
Alw26I	GTCTC	1 cut(s)	901
AlwI	GGATC	3 cut(s)	748, 980, 993
AlwNI	CAGNNNCTG	1 cut(s)	1022
AoxI	GGCC	3 cut(s)	30, 729, 1004
ApeKI	GCWGC	4 cut(s)	215, 331, 608, 675
Asp700I	GAANNNNTTC	1 cut(s)	924
AspS9I	GGNCC	5 cut(s)	31, 58, 367, 548, 1004
AsuC2I	CCSGG	1 cut(s)	586
AsuHPI	GGTGA	4 cut(s)	1091, 1127, 1133, 1166
AvaII	GGWCC	3 cut(s)	58, 367, 548
BaeGI	GKGCMC	1 cut(s)	785
BaeI	ACNNNNGTAYC	2 cut(s)	515, 548
BalI	TGGCCA	1 cut(s)	731
BamHI	GGATCC	1 cut(s)	985
BbsI	GAAGAC	1 cut(s)	229
BbvI	GCAGC	4 cut(s)	202, 318, 595, 687
BccI	CCATC	1 cut(s)	1133
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	915
BciVI	GTATCC	1 cut(s)	543
BcnI	CCSGG	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	901
BfuAI	ACCTGC	1 cut(s)	958
BfuI	GTATCC	1 cut(s)	543
BglI	GCCNNNNNGGC	1 cut(s)	38
BisI	GCNGC	4 cut(s)	216, 332, 609, 676
BlsI	GCNGC	4 cut(s)	217, 333, 610, 677
Bme1390I	CCNGG	2 cut(s)	586, 915
Bme18I	GGWCC	3 cut(s)	58, 367, 548
BmgT120I	GGNCC	5 cut(s)	31, 58, 367, 548, 1004
BmiI	GGNNCC	1 cut(s)	987
BmrFI	CCNGG	2 cut(s)	586, 915
BmrI	ACTGGG	2 cut(s)	276, 586
BmsI	GCATC	3 cut(s)	832, 958, 1033
BmuI	ACTGGG	2 cut(s)	276, 586
BpiI	GAAGAC	1 cut(s)	229
BplI	GAGNNNNNCTC	2 cut(s)	583, 615
BpmI	CTGGAG	3 cut(s)	633, 774, 936
BpuMI	CCSGG	1 cut(s)	586
BsaI	GGTCTC	1 cut(s)	901
BsaJI	CCNNGG	2 cut(s)	322, 913
BsaXI	ACNNNNNCTCC	8 cut(s)	219, 249, 398, 428, 747, 777, 909, 939
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 542, 920
Bse1I	ACTGG	4 cut(s)	271, 581, 650, 893
BseBI	CCWGG	1 cut(s)	915
BseDI	CCNNGG	2 cut(s)	322, 913
BseGI	GGATG	2 cut(s)	19, 114
BseLI	CCNNNNNNNGG	3 cut(s)	124, 542, 920
BseMII	CTCAG	1 cut(s)	795
BseNI	ACTGG	4 cut(s)	271, 581, 650, 893
BseRI	GAGGAG	1 cut(s)	1149
BseSI	GKGCMC	1 cut(s)	785
BseXI	GCAGC	4 cut(s)	202, 318, 595, 687
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	3 cut(s)	32, 731, 1006
BsiSI	CCGG	1 cut(s)	586
BslI	CCNNNNNNNGG	3 cut(s)	124, 542, 920
BsmAI	GTCTC	1 cut(s)	901
BsnI	GGCC	3 cut(s)	32, 731, 1006
Bso31I	GGTCTC	1 cut(s)	901
Bsp1286I	GDGCHC	1 cut(s)	785
Bsp1407I	TGTACA	2 cut(s)	846, 973
Bsp143I	GATC	3 cut(s)	740, 978, 985
BspACI	CCGC	3 cut(s)	34, 118, 303
BspANI	GGCC	3 cut(s)	32, 731, 1006
BspCNI	CTCAG	1 cut(s)	796
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	987
BspMI	ACCTGC	1 cut(s)	958
BspPI	GGATC	3 cut(s)	748, 980, 993
BspTNI	GGTCTC	1 cut(s)	901
BsrGI	TGTACA	2 cut(s)	846, 973
BsrI	ACTGG	4 cut(s)	271, 581, 650, 893
BssECI	CCNNGG	2 cut(s)	322, 913
BssMI	GATC	3 cut(s)	740, 978, 985
Bst2UI	CCWGG	1 cut(s)	915
Bst4CI	ACNGT	6 cut(s)	323, 476, 851, 1018, 1085, 1176
Bst6I	CTCTTC	3 cut(s)	387, 899, 1060
BstAUI	TGTACA	2 cut(s)	846, 973
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	4 cut(s)	419, 571, 804, 1168
BstDSI	CCRYGG	1 cut(s)	322
BstENI	CCTNNNNNAGG	1 cut(s)	918
BstF5I	GGATG	2 cut(s)	19, 114
BstFNI	CGCG	1 cut(s)	36
BstKTI	GATC	3 cut(s)	743, 981, 988
BstMAI	GTCTC	1 cut(s)	901
BstMBI	GATC	3 cut(s)	740, 978, 985
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 71, 108, 117, 451, 605
BstNI	CCWGG	1 cut(s)	915
BstSCI	CCNGG	2 cut(s)	584, 913
BstSLI	GKGCMC	1 cut(s)	785
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	4 cut(s)	202, 318, 595, 687
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	2 cut(s)	740, 985
BstXI	CCANNNNNNTGG	1 cut(s)	778
BstYI	RGATCY	2 cut(s)	740, 985
BsuI	GTATCC	1 cut(s)	543
BsuRI	GGCC	3 cut(s)	32, 731, 1006
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	19, 114
BtsIMutI	CAGTG	2 cut(s)	547, 657
BveI	ACCTGC	1 cut(s)	958
Cac8I	GCNNGC	1 cut(s)	34
CaiI	CAGNNNCTG	1 cut(s)	1022
Cfr13I	GGNCC	5 cut(s)	31, 58, 367, 548, 1004
Csp6I	GTAC	4 cut(s)	19, 319, 847, 974
CviAII	CATG	3 cut(s)	632, 704, 982
CviQI	GTAC	4 cut(s)	19, 319, 847, 974
DdeI	CTNAG	4 cut(s)	419, 571, 804, 1168
DpnI	GATC	3 cut(s)	742, 980, 987
DpnII	GATC	3 cut(s)	740, 978, 985
EaeI	YGGCCR	1 cut(s)	729
Eam1104I	CTCTTC	3 cut(s)	387, 899, 1060
EarI	CTCTTC	3 cut(s)	387, 899, 1060
EciI	GGCGGA	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	901
Eco47I	GGWCC	3 cut(s)	58, 367, 548
Eco57I	CTGAAG	1 cut(s)	1053
EcoNI	CCTNNNNNAGG	1 cut(s)	918
EcoO109I	RGGNCCY	1 cut(s)	1004
EcoRII	CCWGG	1 cut(s)	913
EcoT22I	ATGCAT	1 cut(s)	814
FaeI	CATG	3 cut(s)	635, 707, 985
FatI	CATG	3 cut(s)	631, 703, 981
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	4 cut(s)	216, 332, 609, 676
FokI	GGATG	2 cut(s)	26, 101
Fsp4HI	GCNGC	4 cut(s)	216, 332, 609, 676
GluI	GCNGC	4 cut(s)	216, 332, 609, 676
GsuI	CTGGAG	3 cut(s)	633, 774, 936
HaeIII	GGCC	3 cut(s)	32, 731, 1006
HapII	CCGG	1 cut(s)	586
Hin1II	CATG	3 cut(s)	635, 707, 985
HinfI	GANTC	2 cut(s)	306, 1163
HpaII	CCGG	1 cut(s)	586
HphI	GGTGA	4 cut(s)	1091, 1127, 1133, 1166
Hpy166II	GTNNAC	3 cut(s)	319, 847, 1124
Hpy188I	TCNGA	9 cut(s)	207, 469, 718, 725, 745, 828, 841, 954, 1171
Hpy188III	TCNNGA	1 cut(s)	602
Hpy8I	GTNNAC	3 cut(s)	319, 847, 1124
Hpy99I	CGWCG	2 cut(s)	80, 95
HpyAV	CCTTC	6 cut(s)	18, 22, 914, 1020, 1112, 1124
HpyCH4III	ACNGT	6 cut(s)	323, 476, 851, 1018, 1085, 1176
HpyCH4IV	ACGT	2 cut(s)	242, 1126
HpyCH4V	TGCA	5 cut(s)	334, 353, 520, 812, 992
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 71, 108, 117, 451, 605
HpyF3I	CTNAG	4 cut(s)	419, 571, 804, 1168
HpySE526I	ACGT	2 cut(s)	242, 1126
Hsp92II	CATG	3 cut(s)	635, 707, 985
Kzo9I	GATC	3 cut(s)	740, 978, 985
LmnI	GCTCC	1 cut(s)	964
Lsp1109I	GCAGC	4 cut(s)	202, 318, 595, 687
LweI	GCATC	3 cut(s)	832, 958, 1033
MaeII	ACGT	2 cut(s)	242, 1126
MaeIII	GTNAC	2 cut(s)	221, 1079
MalI	GATC	3 cut(s)	742, 980, 987
MboI	GATC	3 cut(s)	740, 978, 985
MboII	GAAGA	6 cut(s)	229, 401, 404, 916, 1047, 1059
MflI	RGATCY	2 cut(s)	740, 985
MhlI	GDGCHC	1 cut(s)	785
MlsI	TGGCCA	1 cut(s)	731
MluCI	AATT	2 cut(s)	354, 872
MluNI	TGGCCA	1 cut(s)	731
MmeI	TCCRAC	2 cut(s)	849, 1080
Mox20I	TGGCCA	1 cut(s)	731
Mph1103I	ATGCAT	1 cut(s)	814
MroXI	GAANNNNTTC	1 cut(s)	924
MscI	TGGCCA	1 cut(s)	731
MseI	TTAA	4 cut(s)	246, 357, 669, 815
MslI	CAYNNNNRTG	1 cut(s)	773
Msp20I	TGGCCA	1 cut(s)	731
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	1 cut(s)	586
MspR9I	CCNGG	2 cut(s)	586, 915
MvaI	CCWGG	1 cut(s)	915
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	6 cut(s)	38, 71, 108, 117, 451, 605
NciI	CCSGG	1 cut(s)	586
NdeII	GATC	3 cut(s)	740, 978, 985
NlaIII	CATG	3 cut(s)	635, 707, 985
NlaIV	GGNNCC	1 cut(s)	987
NmuCI	GTSAC	2 cut(s)	221, 1079
NsiI	ATGCAT	1 cut(s)	814
OliI	CACNNNNGTG	1 cut(s)	773
PdmI	GAANNNNTTC	1 cut(s)	924
PfeI	GAWTC	2 cut(s)	306, 1163
PkrI	GCNGC	4 cut(s)	217, 333, 610, 677
Psp6I	CCWGG	1 cut(s)	913
PspGI	CCWGG	1 cut(s)	913
PspN4I	GGNNCC	1 cut(s)	987
PspPI	GGNCC	5 cut(s)	31, 58, 367, 548, 1004
PstNI	CAGNNNCTG	1 cut(s)	1022
PsuI	RGATCY	2 cut(s)	740, 985
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	4 cut(s)	20, 320, 848, 975
RsaNI	GTAC	4 cut(s)	19, 319, 847, 974
RseI	CAYNNNNRTG	1 cut(s)	773
SaqAI	TTAA	4 cut(s)	246, 357, 669, 815
SatI	GCNGC	4 cut(s)	216, 332, 609, 676
Sau3AI	GATC	3 cut(s)	740, 978, 985
Sau96I	GGNCC	5 cut(s)	31, 58, 367, 548, 1004
ScrFI	CCNGG	2 cut(s)	586, 915
SduI	GDGCHC	1 cut(s)	785
SfaNI	GCATC	3 cut(s)	832, 958, 1033
SinI	GGWCC	3 cut(s)	58, 367, 548
SmiMI	CAYNNNNRTG	1 cut(s)	773
Sse9I	AATT	2 cut(s)	354, 872
SsiI	CCGC	3 cut(s)	34, 118, 303
StyD4I	CCNGG	2 cut(s)	584, 913
TaaI	ACNGT	6 cut(s)	323, 476, 851, 1018, 1085, 1176
TaiI	ACGT	2 cut(s)	245, 1129
TaqI	TCGA	1 cut(s)	284
TasI	AATT	2 cut(s)	354, 872
TatI	WGTACW	3 cut(s)	18, 846, 973
TfiI	GAWTC	2 cut(s)	306, 1163
Tru1I	TTAA	4 cut(s)	246, 357, 669, 815
Tru9I	TTAA	4 cut(s)	246, 357, 669, 815
TscAI	CASTG	2 cut(s)	547, 657
TseFI	GTSAC	2 cut(s)	221, 1079
TseI	GCWGC	4 cut(s)	215, 331, 608, 675
Tsp45I	GTSAC	2 cut(s)	221, 1079
TspDTI	ATGAA	3 cut(s)	72, 648, 917
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	2 cut(s)	547, 657
VpaK11BI	GGWCC	3 cut(s)	58, 367, 548
XagI	CCTNNNNNAGG	1 cut(s)	918
XcmI	CCANNNNNNNNNTGG	1 cut(s)	775
XmnI	GAANNNNTTC	1 cut(s)	924
Zsp2I	ATGCAT	1 cut(s)	814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.