Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001167.1

Orthogroup ID

OG0012244

Physical Location & Seq

Genomic Coordinates Reverse (-)

321958 .. 325218

Gene Structure 3261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001167.1_g000081.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 572 bp

gttctaatgccctctccacaaacgtagactgggaaacccggttgagaatagctcttgaagctgcgaaaggtttggagtatctccatgaacaagttagtcctccagtgatacacagagattttaagagcagcaacattctcttggacaaaacattccatgccaaagtttctgatttcggattggccaaacttggatctgacaaagctggaggttatgtttccaccagagtgttgggcacacagggatatgttgcccctgagtatgcattaacagggcatctgacaactaaatcagttgtgtacagttatggggttgcgctgttggaattgctaacaggcagagttccagttgatatgaagagaccccctggagaaggtgttctcgtttcttgggtgggtgttctagttctatatgaaaaagttcgacacttggatactcatattggtcaacctcagtttagtcctcctacgtttctatctattcctgtgctgcatgaagtgactccaggtggcgtcactattgacctttgcgatggcgtagttgccgtcgtcaaacttgaagctacggcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

189

Amino Acids

20.4

Weight (kDa)

6.36

Isoelectric Point (pI)

28.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58690
fragaria_vesca	FvH4_6g27620
malus_domestica	MD17G1265400.v1.1
prunus_persica	Prupe.3G115500_v2.0.a1 Prupe.3G115500_v2.0.a1
pyrus_communis	pycom17g26510
rosa_chinensis	RchiOBHm_Chr2g0130301
rosa_laevigata	RLG00000019133
rosa_multiflora	Rmu_sc0001167.1_g000081 Rmu_sc0001336.1_g000074 Rmu_sc0029344.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114050
rosa_rugosa	Rorug01G0180700 Rorug01G0180800 Rorug02G0291400
rosa_samantha	Rh2CG330200 Rh2DG369400
rosa_wichuraiana	Rw2G027620 Rw5G020570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	26
AclWI	GGATC	1 cut(s)	201
AcoI	YGGCCR	1 cut(s)	182
AcyI	GRCGYC	1 cut(s)	512
AfaI	GTAC	1 cut(s)	301
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgsI	TTSAA	2 cut(s)	58, 559
AjnI	CCWGG	2 cut(s)	366, 504
AleI	CACNNNNGTG	1 cut(s)	226
AloI	GAACNNNNNNTCC	2 cut(s)	362, 394
AluBI	AGCT	4 cut(s)	52, 61, 205, 562
AluI	AGCT	4 cut(s)	52, 61, 205, 562
Alw26I	GTCTC	1 cut(s)	354
AlwI	GGATC	1 cut(s)	201
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	3 cut(s)	61, 128, 489
Asp700I	GAANNNNTTC	2 cut(s)	377, 419
AspLEI	GCGC	1 cut(s)	318
AsuC2I	CCSGG	1 cut(s)	39
BaeGI	GKGCMC	1 cut(s)	238
BalI	TGGCCA	1 cut(s)	184
BbvI	GCAGC	3 cut(s)	48, 140, 476
BccI	CCATC	1 cut(s)	526
BceAI	ACGGC	1 cut(s)	529
BciT130I	CCWGG	2 cut(s)	368, 506
BciVI	GTATCC	1 cut(s)	426
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	354
BfaI	CTAG	1 cut(s)	403
BfuI	GTATCC	1 cut(s)	426
BisI	GCNGC	3 cut(s)	62, 129, 490
BlsI	GCNGC	3 cut(s)	63, 130, 491
Bme1390I	CCNGG	3 cut(s)	39, 368, 506
BmrFI	CCNGG	3 cut(s)	39, 368, 506
BmrI	ACTGGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	285
BmuI	ACTGGG	1 cut(s)	39
BplI	GAGNNNNNCTC	2 cut(s)	36, 68
BpmI	CTGGAG	4 cut(s)	86, 227, 389, 488
BpuMI	CCSGG	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	512
BsaI	GGTCTC	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	366
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 362, 392
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse1I	ACTGG	3 cut(s)	34, 103, 346
BseBI	CCWGG	2 cut(s)	368, 506
BseDI	CCNNGG	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMII	CTCAG	2 cut(s)	248, 466
BseNI	ACTGG	3 cut(s)	34, 103, 346
BseSI	GKGCMC	1 cut(s)	238
BseXI	GCAGC	3 cut(s)	48, 140, 476
BshFI	GGCC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	1 cut(s)	354
BsnI	GGCC	1 cut(s)	184
Bso31I	GGTCTC	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp1407I	TGTACA	1 cut(s)	299
Bsp143I	GATC	1 cut(s)	193
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	2 cut(s)	249, 465
BspPI	GGATC	1 cut(s)	201
BspTNI	GGTCTC	1 cut(s)	354
BsrGI	TGTACA	1 cut(s)	299
BsrI	ACTGG	3 cut(s)	34, 103, 346
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	1 cut(s)	193
BssNI	GRCGYC	1 cut(s)	512
Bst2UI	CCWGG	2 cut(s)	368, 506
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	1 cut(s)	352
BstACI	GRCGYC	1 cut(s)	512
BstAUI	TGTACA	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	257, 452
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	2 cut(s)	368, 506
BstSCI	CCNGG	3 cut(s)	37, 366, 504
BstSLI	GKGCMC	1 cut(s)	238
BstV1I	GCAGC	3 cut(s)	48, 140, 476
BstX2I	RGATCY	1 cut(s)	193
BstXI	CCANNNNNNTGG	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	184
BtgZI	GCGATG	1 cut(s)	545
BtsIMutI	CAGTG	1 cut(s)	110
CfoI	GCGC	1 cut(s)	318
CseI	GACGC	1 cut(s)	501
Csp6I	GTAC	1 cut(s)	300
CviAII	CATG	3 cut(s)	85, 157, 493
CviJI	RGCY	5 cut(s)	52, 61, 184, 205, 562
CviKI_1	RGCY	5 cut(s)	52, 61, 184, 205, 562
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	2 cut(s)	257, 452
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
Eco31I	GGTCTC	1 cut(s)	354
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	366, 504
EcoT22I	ATGCAT	1 cut(s)	267
FaeI	CATG	3 cut(s)	88, 160, 496
FatI	CATG	3 cut(s)	84, 156, 492
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	3 cut(s)	62, 129, 490
Fsp4HI	GCNGC	3 cut(s)	62, 129, 490
FspBI	CTAG	1 cut(s)	403
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	3 cut(s)	62, 129, 490
GsuI	CTGGAG	4 cut(s)	86, 227, 389, 488
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	1 cut(s)	501
HhaI	GCGC	1 cut(s)	318
Hin1I	GRCGYC	1 cut(s)	512
Hin1II	CATG	3 cut(s)	88, 160, 496
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	1 cut(s)	501
HpaII	CCGG	1 cut(s)	39
Hpy166II	GTNNAC	3 cut(s)	27, 300, 448
Hpy188I	TCNGA	4 cut(s)	171, 178, 198, 281
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	3 cut(s)	27, 300, 448
Hpy99I	CGWCG	1 cut(s)	550
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	2 cut(s)	23, 469
HpyCH4V	TGCA	2 cut(s)	265, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	2 cut(s)	257, 452
HpySE526I	ACGT	2 cut(s)	23, 469
Hsp92I	GRCGYC	1 cut(s)	512
Hsp92II	CATG	3 cut(s)	88, 160, 496
HspAI	GCGC	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	193
Lsp1109I	GCAGC	3 cut(s)	48, 140, 476
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	1 cut(s)	403
MaeII	ACGT	2 cut(s)	23, 469
MaeIII	GTNAC	2 cut(s)	498, 513
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	1 cut(s)	369
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	238
MlsI	TGGCCA	1 cut(s)	184
MluCI	AATT	1 cut(s)	325
MluNI	TGGCCA	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	495
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	5 cut(s)	22, 110, 202, 461, 473
Mox20I	TGGCCA	1 cut(s)	184
Mph1103I	ATGCAT	1 cut(s)	267
MroXI	GAANNNNTTC	2 cut(s)	377, 419
MscI	TGGCCA	1 cut(s)	184
MseI	TTAA	2 cut(s)	122, 268
MslI	CAYNNNNRTG	1 cut(s)	226
Msp20I	TGGCCA	1 cut(s)	184
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	3 cut(s)	39, 368, 506
MvaI	CCWGG	2 cut(s)	368, 506
MwoI	GCNNNNNNNGC	1 cut(s)	58
NciI	CCSGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	3 cut(s)	88, 160, 496
NmuCI	GTSAC	2 cut(s)	498, 513
NsiI	ATGCAT	1 cut(s)	267
OliI	CACNNNNGTG	1 cut(s)	226
PdmI	GAANNNNTTC	2 cut(s)	377, 419
PkrI	GCNGC	3 cut(s)	63, 130, 491
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	366, 504
PspGI	CCWGG	2 cut(s)	366, 504
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
RseI	CAYNNNNRTG	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	122, 268
SatI	GCNGC	3 cut(s)	62, 129, 490
Sau3AI	GATC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	495
ScrFI	CCNGG	3 cut(s)	39, 368, 506
SduI	GDGCHC	1 cut(s)	238
SfaNI	GCATC	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	226
Sse9I	AATT	1 cut(s)	325
SspMI	CTAG	1 cut(s)	403
StyD4I	CCNGG	3 cut(s)	37, 366, 504
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	2 cut(s)	26, 472
TaqI	TCGA	1 cut(s)	423
TasI	AATT	1 cut(s)	325
TatI	WGTACW	1 cut(s)	299
Tru1I	TTAA	2 cut(s)	122, 268
Tru9I	TTAA	2 cut(s)	122, 268
TscAI	CASTG	1 cut(s)	110
TseFI	GTSAC	2 cut(s)	498, 513
TseI	GCWGC	3 cut(s)	61, 128, 489
Tsp45I	GTSAC	2 cut(s)	498, 513
TspDTI	ATGAA	4 cut(s)	101, 370, 428, 509
TspRI	CASTG	1 cut(s)	110
XagI	CCTNNNNNAGG	1 cut(s)	371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	26
XmnI	GAANNNNTTC	2 cut(s)	377, 419
XspI	CTAG	1 cut(s)	403
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.