Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012244

Physical Location & Seq

Genomic Coordinates Reverse (-)

24786509 .. 24788740

Gene Structure 2232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0180700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2232 bp

ATGTTGGAGGGGGGAATTCCAGTCAACCTGACCTTATGCGCAGAACTGAGCTACTTAAATATTGGAGAAAACCGCTTTACCGGCAAAATTCCTTCAGAGATCGGGTCATTGAGGAAGCTTGTGCATCTCACTCTAGAGGAAAACAATCTGACAGGAGCCATCCCACCTTCCTTGGGGAATCTTTCATCACTCACTGAACTTTTTCTGGGATGGAACAATTTGGTGGGCACCATTCCAGAGGTGCTAGGCCGATTGAGAAGCTTATCACTTTTTGCAATTGGTCTCAATAATCTCTCTGGTTTGATCCCTCCCTCCCTTTTTAACATATCATCTATGAATGGCATCTCACTTACGGGTAATATGTTTAAGGGCAGTATTCCGCCTGGTATAGGCCTAAACATGCCTAATCTCCAGATATTGTTCCTCTCTGAAAATGAATTCTCTGGAGAAATCCCTGCTTCACTTTCCAATGCTTCTCAGCTTCATTCGCTTGATTTTGGGCACAATAATTTTGTTGGCCAACTTCCCGCAAGTTTTGGAAATTTTCCTAATCTCCAGCAGCTCAACTTCGAGGTCAATAATCTAGGAAGTAATTCATCAAATGATTTGGGATTTATATCATTGTTGACAAATTGCAGCAATCTGGAGATGTTTTCTCTGAGTTATAACAATTTTGGAGGTGTTTTACCCAACTCTGTAGCCAATTTCTCAACTCAACTGACTGAACTCTACCTTGGAGGTAATCAAATAGTGGGAACGATTCCTAAAGCATTAGGAAATCTCAACAGTTTAATACACTTGAGCCTGGAACATAACTTGTTCACAGGTATCATTCCAGCTTCTTTTGGGAAGTTGCAAAAACTGCAAAGATTATTTTTAAATTCCAATAGATTATCAGGACAGATCCCATCTTCTCTTGGAAACCTCACCCAATTGTTTCTACTCTACTTATTAGAAAATGAATTAGAAGGAAGCATTCCTCCAAATATTGGTAATTGCCAAAATCTGCAGGTGATGGATATATCACACAATAAGCTTAGTGGAGAAATACCATCACAGGTCATAGGCCTGTCCTCCTTCTCTATCAAGCTCAATTTATCACAAAACTCGCTAACAGGCACTCTGCCTGTGGAAGTGGGTAAGCTGAAGAATATCAATACATGCAATATCTCTGATAATAATTTGACCGGAGGAATTCCAGAAATTATTGGAGGCTGTCTGAGCCTTGAATTTCTTTACCTCCAAGGGAACCACTTTCAAGGAATCATACCTTCTTCTTTGGCTGCTTTGAGAGGTCTTCAGTATCTAGATCTTTCACGAAACAACTTGTCAGGACATATTCCAAAAGACCTACAGAGACTTCCATTCTTGATCCATTTGAACCTTTCGTTCAATAATCTAGAGGGTGAGGTACCGAAAGAAAGAGTTTTTCGAAACACAAGTGCAATATCATTGGATGGAAATACCAAACTTTGTGGAGGTTTTTCAGAATTACAGCTACCAGCATGCCCCATCAAAGGACCAAAGCAAAGAAAGTGGCATGGTTTCAAACTAAAGTTCACAACTTCCTTGGTCTCTGGATGCTCTCTTCTGTCTGCAGTCGTCTTAGCTCTTTATTGGAGGAGAAAAACTCAAAAGAAGAAACCATTAATAGCAGTGTCATCAATTAACTTCCTTCCAAAGGTTTCATACCAGACGCTTCATCATGCTACTGCCGGATTCTCTCCGAGCAATCAAATTGGATCAGGTGGTTTTGGCTCTGTATACAAAGGGATTCTTAATAAAGAAGAAAACAATGTTGTTGCCATCAAGGTCCTCAACCTTCAACAAAAAGGTGCTTCCAAGAGTTTTGTGGTTGAATGCAATGCATTGAGAAATATCCAGCACAGGAACCTTGTGAAGATCTTGACATGTTGCTCCAGCACGGACTACAATGGTAATGACTTCAAAGCTCTAGTCTTTGAGTATATGTCAAATGGAAGTTTAGAGGAGTGGTTGCATAGAGAAAATCAATCAAGGAGTTTGAACCTTCTTCAAAGACTGAATATTGCTGTTGATTTGGCTTCTGCATTGTATTATCTTCATGACCATTGTGAACCACATATCATTCACTGCGACGTGAAGCCGAGCAACGTTCTTCTTGATGATGACATGGTTGCTCGTGTTGGTGATTTTGGGTTGGCAAGACTCATCTCAACGACCACGGACTCCTATCAAAATCGATCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

743

Amino Acids

81.05

Weight (kDa)

8.14

Isoelectric Point (pI)

36.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	15 - 74	2.7e-06	Leucine rich repeat
LRR_14	PF23598	15 - 89	2.6e-06	Leucine-rich repeat region
LRR_8	PF13855	239 - 298	3.4e-11	Leucine rich repeat
LRR_8	PF13855	264 - 322	7.8e-06	Leucine rich repeat
LRR_8	PF13855	409 - 467	6.6e-09	Leucine rich repeat
Pkinase	PF00069	577 - 736	1.3e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	578 - 740	2.6e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58690
fragaria_vesca	FvH4_6g27620
malus_domestica	MD17G1265400.v1.1
prunus_persica	Prupe.3G115500_v2.0.a1 Prupe.3G115500_v2.0.a1
pyrus_communis	pycom17g26510
rosa_chinensis	RchiOBHm_Chr2g0130301
rosa_laevigata	RLG00000019133
rosa_multiflora	Rmu_sc0001167.1_g000081 Rmu_sc0001336.1_g000074 Rmu_sc0029344.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114050
rosa_rugosa	Rorug01G0180700 Rorug01G0180800 Rorug02G0291400
rosa_samantha	Rh2CG330200 Rh2DG369400
rosa_wichuraiana	Rw2G027620 Rw5G020570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	666
AarI	CACCTGC	1 cut(s)	1000
Acc16I	TGCGCA	1 cut(s)	40
Acc36I	ACCTGC	1 cut(s)	1000
Acc65I	GGTACC	1 cut(s)	1411
AccB1I	GGYRCC	2 cut(s)	227, 1411
AccB7I	CCANNNNNTGG	1 cut(s)	989
AccI	GTMKAC	1 cut(s)	1764
AciI	CCGC	3 cut(s)	73, 380, 528
AclI	AACGTT	1 cut(s)	2133
AclWI	GGATC	4 cut(s)	298, 898, 1366, 1750
AcoI	YGGCCR	1 cut(s)	517
AcsI	RAATTY	7 cut(s)	15, 87, 437, 541, 880, 1194, 1229
AcuI	CTGAAG	3 cut(s)	78, 1166, 1283
AfaI	GTAC	1 cut(s)	1413
AfiI	CCNNNNNNNGG	5 cut(s)	173, 389, 989, 1517, 1681
AflIII	ACRYGT	1 cut(s)	1910
AjiI	CACGTC	1 cut(s)	2119
AjnI	CCWGG	2 cut(s)	382, 804
AjuI	GAANNNNNNNTTGG	2 cut(s)	717, 749
Alw26I	GTCTC	3 cut(s)	287, 1351, 1579
AlwI	GGATC	4 cut(s)	298, 898, 1366, 1750
AoxI	GGCC	4 cut(s)	247, 391, 517, 1066
ApeKI	GCWGC	3 cut(s)	559, 636, 1283
ApoI	RAATTY	7 cut(s)	15, 87, 437, 541, 880, 1194, 1229
ArsI	GACNNNNNNTTYG	2 cut(s)	1941, 1973
AseI	ATTAAT	1 cut(s)	1649
Asp700I	GAANNNNTTC	2 cut(s)	201, 592
Asp718I	GGTACC	1 cut(s)	1411
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	1520, 1813
AsuHPI	GGTGA	4 cut(s)	919, 1024, 1418, 2180
AsuII	TTCGAA	1 cut(s)	1432
AvaII	GGWCC	2 cut(s)	1520, 1813
BaeGI	GKGCMC	2 cut(s)	230, 504
BalI	TGGCCA	1 cut(s)	519
BanI	GGYRCC	2 cut(s)	227, 1411
BauI	CACGAG	1 cut(s)	2160
BbsI	GAAGAC	1 cut(s)	1289
BbvI	GCAGC	3 cut(s)	571, 648, 1270
BccI	CCATC	8 cut(s)	167, 204, 916, 1009, 1060, 1451, 1520, 1814
BciT130I	CCWGG	2 cut(s)	384, 806
BcoDI	GTCTC	3 cut(s)	287, 1351, 1579
BfaI	CTAG	6 cut(s)	134, 245, 584, 1307, 1400, 1955
BfmI	CTRYAG	4 cut(s)	696, 1007, 1352, 1596
BfuAI	ACCTGC	1 cut(s)	1000
BglII	AGATCT	2 cut(s)	1309, 1902
BisI	GCNGC	3 cut(s)	560, 637, 1284
BlsI	GCNGC	3 cut(s)	561, 638, 1285
Bme1390I	CCNGG	2 cut(s)	384, 806
Bme18I	GGWCC	2 cut(s)	1520, 1813
BmgBI	CACGTC	1 cut(s)	2119
BmgT120I	GGNCC	2 cut(s)	1520, 1813
BmiI	GGNNCC	5 cut(s)	157, 229, 1250, 1413, 1892
BmrFI	CCNGG	2 cut(s)	384, 806
BmsI	GCATC	3 cut(s)	133, 351, 1571
BpiI	GAAGAC	1 cut(s)	1289
BplI	GAGNNNNNCTC	2 cut(s)	1615, 1647
BpmI	CTGGAG	5 cut(s)	395, 465, 539, 665, 1903
Bpu14I	TTCGAA	1 cut(s)	1432
BpuEI	CTTGAG	1 cut(s)	820
Bsa29I	ATCGAT	1 cut(s)	2221
BsaBI	GATNNNNATC	1 cut(s)	616
BsaI	GGTCTC	2 cut(s)	287, 1579
BsaJI	CCNNGG	5 cut(s)	171, 733, 1243, 1569, 2202
BsaWI	WCCGGW	1 cut(s)	1187
Bsc4I	CCNNNNNNNGG	5 cut(s)	173, 389, 989, 1517, 1681
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	1870
Bse8I	GATNNNNATC	1 cut(s)	616
BseBI	CCWGG	2 cut(s)	384, 806
BseCI	ATCGAT	1 cut(s)	2221
BseDI	CCNNGG	5 cut(s)	171, 733, 1243, 1569, 2202
BseGI	GGATG	4 cut(s)	159, 215, 1462, 1586
BseJI	GATNNNNATC	1 cut(s)	616
BseLI	CCNNNNNNNGG	5 cut(s)	173, 389, 989, 1517, 1681
BseMI	GCAATG	1 cut(s)	1870
BseMII	CTCAG	4 cut(s)	38, 491, 650, 1211
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	2 cut(s)	1636, 2003
BseSI	GKGCMC	2 cut(s)	230, 504
BseXI	GCAGC	3 cut(s)	571, 648, 1270
BshFI	GGCC	4 cut(s)	249, 393, 519, 1068
BshNI	GGYRCC	2 cut(s)	227, 1411
BshVI	ATCGAT	1 cut(s)	2221
BsiSI	CCGG	3 cut(s)	81, 1188, 1716
BslI	CCNNNNNNNGG	5 cut(s)	173, 389, 989, 1517, 1681
BsmAI	GTCTC	3 cut(s)	287, 1351, 1579
BsmI	GAATGC	2 cut(s)	975, 1865
BsnI	GGCC	4 cut(s)	249, 393, 519, 1068
Bso31I	GGTCTC	2 cut(s)	287, 1579
Bsp119I	TTCGAA	1 cut(s)	1432
Bsp1286I	GDGCHC	2 cut(s)	230, 504
Bsp143I	GATC	8 cut(s)	99, 303, 903, 1309, 1371, 1742, 1902, 2222
BspACI	CCGC	3 cut(s)	73, 380, 528
BspANI	GGCC	4 cut(s)	249, 393, 519, 1068
BspCNI	CTCAG	4 cut(s)	39, 490, 651, 1212
BspDI	ATCGAT	1 cut(s)	2221
BspHI	TCATGA	1 cut(s)	2083
BspLI	GGNNCC	5 cut(s)	157, 229, 1250, 1413, 1892
BspMAI	CTGCAG	2 cut(s)	1011, 1600
BspMI	ACCTGC	1 cut(s)	1000
BspPI	GGATC	4 cut(s)	298, 898, 1366, 1750
BspT104I	TTCGAA	1 cut(s)	1432
BspT107I	GGYRCC	2 cut(s)	227, 1411
BspTNI	GGTCTC	2 cut(s)	287, 1579
BsrDI	GCAATG	1 cut(s)	1870
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	5 cut(s)	171, 733, 1243, 1569, 2202
BssMI	GATC	8 cut(s)	99, 303, 903, 1309, 1371, 1742, 1902, 2222
BssNAI	GTATAC	1 cut(s)	1765
BssSI	CACGAG	1 cut(s)	2160
BssT1I	CCWWGG	4 cut(s)	171, 733, 1243, 1569
Bst1107I	GTATAC	1 cut(s)	1765
Bst2BI	CACGAG	1 cut(s)	2160
Bst2UI	CCWGG	2 cut(s)	384, 806
Bst4CI	ACNGT	1 cut(s)	788
Bst6I	CTCTTC	1 cut(s)	1593
BstAPI	GCANNNNNTGC	1 cut(s)	862
BstBI	TTCGAA	1 cut(s)	1432
BstC8I	GCNNGC	1 cut(s)	1507
BstDEI	CTNAG	6 cut(s)	47, 477, 659, 1037, 1220, 1606
BstDSI	CCRYGG	1 cut(s)	2202
BstENI	CCTNNNNNAGG	2 cut(s)	387, 1679
BstF5I	GGATG	4 cut(s)	159, 215, 1462, 1586
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	8 cut(s)	102, 306, 906, 1312, 1374, 1745, 1905, 2225
BstMAI	GTCTC	3 cut(s)	287, 1351, 1579
BstMBI	GATC	8 cut(s)	99, 303, 903, 1309, 1371, 1742, 1902, 2222
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 487, 862, 1221
BstNI	CCWGG	2 cut(s)	384, 806
BstNSI	RCATGY	4 cut(s)	403, 1164, 1509, 1914
BstSCI	CCNGG	2 cut(s)	382, 804
BstSFI	CTRYAG	4 cut(s)	696, 1007, 1352, 1596
BstSLI	GKGCMC	2 cut(s)	230, 504
BstV1I	GCAGC	3 cut(s)	571, 648, 1270
BstV2I	GAAGAC	1 cut(s)	1289
BstX2I	RGATCY	3 cut(s)	903, 1309, 1902
BstYI	RGATCY	3 cut(s)	903, 1309, 1902
BstZ17I	GTATAC	1 cut(s)	1765
Bsu15I	ATCGAT	1 cut(s)	2221
BsuRI	GGCC	4 cut(s)	249, 393, 519, 1068
BsuTUI	ATCGAT	1 cut(s)	2221
BtgI	CCRYGG	1 cut(s)	2202
BtrI	CACGTC	1 cut(s)	2119
BtsCI	GGATG	4 cut(s)	159, 215, 1462, 1586
BtsI	GCAGTG	2 cut(s)	1662, 2110
BtsIMutI	CAGTG	3 cut(s)	192, 1662, 2110
BveI	ACCTGC	1 cut(s)	1000
Cac8I	GCNNGC	1 cut(s)	1507
CciI	TCATGA	1 cut(s)	2083
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	1520, 1813
ClaI	ATCGAT	1 cut(s)	2221
CseI	GACGC	1 cut(s)	1705
Csp6I	GTAC	1 cut(s)	1412
CspCI	CAANNNNNGTGG	6 cut(s)	153, 188, 1456, 1491, 1517, 1552
CviAII	CATG	8 cut(s)	400, 1161, 1506, 1541, 1706, 1911, 2084, 2152
CviQI	GTAC	1 cut(s)	1412
DdeI	CTNAG	6 cut(s)	47, 477, 659, 1037, 1220, 1606
DpnI	GATC	8 cut(s)	101, 305, 905, 1311, 1373, 1744, 1904, 2224
DpnII	GATC	8 cut(s)	99, 303, 903, 1309, 1371, 1742, 1902, 2222
DraI	TTTAAA	1 cut(s)	879
EaeI	YGGCCR	1 cut(s)	517
Eam1104I	CTCTTC	1 cut(s)	1593
EarI	CTCTTC	1 cut(s)	1593
EciI	GGCGGA	1 cut(s)	369
Eco130I	CCWWGG	4 cut(s)	171, 733, 1243, 1569
Eco147I	AGGCCT	2 cut(s)	393, 1068
Eco31I	GGTCTC	2 cut(s)	287, 1579
Eco47I	GGWCC	2 cut(s)	1520, 1813
Eco57I	CTGAAG	3 cut(s)	78, 1166, 1283
EcoNI	CCTNNNNNAGG	2 cut(s)	387, 1679
EcoO109I	RGGNCCY	1 cut(s)	1813
EcoRI	GAATTC	3 cut(s)	15, 437, 1194
EcoRII	CCWGG	2 cut(s)	382, 804
EcoT14I	CCWWGG	4 cut(s)	171, 733, 1243, 1569
EcoT22I	ATGCAT	1 cut(s)	1870
ErhI	CCWWGG	4 cut(s)	171, 733, 1243, 1569
FaeI	CATG	8 cut(s)	403, 1164, 1509, 1544, 1709, 1914, 2087, 2155
FalI	AAGNNNNNCTT	2 cut(s)	1761, 1793
FatI	CATG	8 cut(s)	399, 1160, 1505, 1540, 1705, 1910, 2083, 2151
FauI	CCCGC	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	1764
Fnu4HI	GCNGC	3 cut(s)	560, 637, 1284
FokI	GGATG	4 cut(s)	146, 222, 1469, 1593
Fsp4HI	GCNGC	3 cut(s)	560, 637, 1284
FspBI	CTAG	6 cut(s)	134, 245, 584, 1307, 1400, 1955
FspI	TGCGCA	1 cut(s)	40
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	3 cut(s)	560, 637, 1284
GsuI	CTGGAG	5 cut(s)	395, 465, 539, 665, 1903
HaeIII	GGCC	4 cut(s)	249, 393, 519, 1068
HapII	CCGG	3 cut(s)	81, 1188, 1716
HgaI	GACGC	1 cut(s)	1705
HhaI	GCGC	1 cut(s)	41
Hin1II	CATG	8 cut(s)	403, 1164, 1509, 1544, 1709, 1914, 2087, 2155
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	2 cut(s)	25, 627
HindII	GTYRAC	2 cut(s)	25, 627
HindIII	AAGCTT	3 cut(s)	116, 259, 1034
HinfI	GANTC	7 cut(s)	178, 760, 1263, 1719, 1774, 2187, 2207
HpaII	CCGG	3 cut(s)	81, 1188, 1716
HphI	GGTGA	4 cut(s)	919, 1024, 1418, 2180
Hpy166II	GTNNAC	6 cut(s)	25, 627, 822, 1560, 1765, 2096
Hpy188I	TCNGA	8 cut(s)	97, 150, 430, 660, 1174, 1221, 1489, 1728
Hpy8I	GTNNAC	6 cut(s)	25, 627, 822, 1560, 1765, 2096
Hpy99I	CGWCG	1 cut(s)	2120
HpyAV	CCTTC	8 cut(s)	102, 177, 962, 1087, 1281, 1685, 1832, 2039
HpyCH4III	ACNGT	1 cut(s)	788
HpyCH4IV	ACGT	2 cut(s)	2118, 2133
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 487, 862, 1221
HpyF3I	CTNAG	6 cut(s)	47, 477, 659, 1037, 1220, 1606
HpySE526I	ACGT	2 cut(s)	2118, 2133
Hsp92II	CATG	8 cut(s)	403, 1164, 1509, 1544, 1709, 1914, 2087, 2155
HspAI	GCGC	1 cut(s)	39
KpnI	GGTACC	1 cut(s)	1415
Kzo9I	GATC	8 cut(s)	99, 303, 903, 1309, 1371, 1742, 1902, 2222
LmnI	GCTCC	2 cut(s)	155, 1922
Lsp1109I	GCAGC	3 cut(s)	571, 648, 1270
LweI	GCATC	3 cut(s)	133, 351, 1571
MaeI	CTAG	6 cut(s)	134, 245, 584, 1307, 1400, 1955
MaeII	ACGT	2 cut(s)	2118, 2133
MalI	GATC	8 cut(s)	101, 305, 905, 1311, 1373, 1744, 1904, 2224
MboI	GATC	8 cut(s)	99, 303, 903, 1309, 1371, 1742, 1902, 2222
MfeI	CAATTG	2 cut(s)	276, 932
MflI	RGATCY	3 cut(s)	903, 1309, 1902
MhlI	GDGCHC	2 cut(s)	230, 504
MlsI	TGGCCA	1 cut(s)	519
MluNI	TGGCCA	1 cut(s)	519
MlyI	GAGTC	2 cut(s)	2181, 2201
Mox20I	TGGCCA	1 cut(s)	519
Mph1103I	ATGCAT	1 cut(s)	1870
MroXI	GAANNNNTTC	2 cut(s)	201, 592
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	8 cut(s)	56, 321, 366, 791, 878, 1649, 1668, 1779
Msp20I	TGGCCA	1 cut(s)	519
MspI	CCGG	3 cut(s)	81, 1188, 1716
MspR9I	CCNGG	2 cut(s)	384, 806
MunI	CAATTG	2 cut(s)	276, 932
Mva1269I	GAATGC	2 cut(s)	975, 1865
MvaI	CCWGG	2 cut(s)	384, 806
MwoI	GCNNNNNNNGC	4 cut(s)	81, 487, 862, 1221
NdeII	GATC	8 cut(s)	99, 303, 903, 1309, 1371, 1742, 1902, 2222
NlaIII	CATG	8 cut(s)	403, 1164, 1509, 1544, 1709, 1914, 2087, 2155
NlaIV	GGNNCC	5 cut(s)	157, 229, 1250, 1413, 1892
NmeAIII	GCCGAG	1 cut(s)	2151
NsbI	TGCGCA	1 cut(s)	40
NsiI	ATGCAT	1 cut(s)	1870
NspI	RCATGY	4 cut(s)	403, 1164, 1509, 1914
NspV	TTCGAA	1 cut(s)	1432
PaeI	GCATGC	1 cut(s)	1509
PagI	TCATGA	1 cut(s)	2083
PaqCI	CACCTGC	1 cut(s)	1000
PceI	AGGCCT	2 cut(s)	393, 1068
PciI	ACATGT	1 cut(s)	1910
PctI	GAATGC	2 cut(s)	975, 1865
PdmI	GAANNNNTTC	2 cut(s)	201, 592
PfeI	GAWTC	5 cut(s)	178, 760, 1263, 1719, 1774
PflMI	CCANNNNNTGG	1 cut(s)	989
PkrI	GCNGC	3 cut(s)	561, 638, 1285
PleI	GAGTC	2 cut(s)	2181, 2201
PpsI	GAGTC	2 cut(s)	2181, 2201
PpuMI	RGGWCCY	1 cut(s)	1813
PscI	ACATGT	1 cut(s)	1910
PshBI	ATTAAT	1 cut(s)	1649
PsiI	TTATAA	1 cut(s)	666
Psp1406I	AACGTT	1 cut(s)	2133
Psp5II	RGGWCCY	1 cut(s)	1813
Psp6I	CCWGG	2 cut(s)	382, 804
PspGI	CCWGG	2 cut(s)	382, 804
PspN4I	GGNNCC	5 cut(s)	157, 229, 1250, 1413, 1892
PspPI	GGNCC	2 cut(s)	1520, 1813
PspPPI	RGGWCCY	1 cut(s)	1813
PstI	CTGCAG	2 cut(s)	1011, 1600
PsuI	RGATCY	3 cut(s)	903, 1309, 1902
RsaI	GTAC	1 cut(s)	1413
RsaNI	GTAC	1 cut(s)	1412
SaqAI	TTAA	8 cut(s)	56, 321, 366, 791, 878, 1649, 1668, 1779
SatI	GCNGC	3 cut(s)	560, 637, 1284
Sau3AI	GATC	8 cut(s)	99, 303, 903, 1309, 1371, 1742, 1902, 2222
Sau96I	GGNCC	2 cut(s)	1520, 1813
SchI	GAGTC	2 cut(s)	2181, 2201
ScrFI	CCNGG	2 cut(s)	384, 806
SduI	GDGCHC	2 cut(s)	230, 504
SfaNI	GCATC	3 cut(s)	133, 351, 1571
SfcI	CTRYAG	4 cut(s)	696, 1007, 1352, 1596
SfuI	TTCGAA	1 cut(s)	1432
SinI	GGWCC	2 cut(s)	1520, 1813
SmlI	CTYRAG	1 cut(s)	799
SmoI	CTYRAG	1 cut(s)	799
SphI	GCATGC	1 cut(s)	1509
SseBI	AGGCCT	2 cut(s)	393, 1068
SsiI	CCGC	3 cut(s)	73, 380, 528
SspI	AATATT	3 cut(s)	61, 988, 2047
SspMI	CTAG	6 cut(s)	134, 245, 584, 1307, 1400, 1955
StuI	AGGCCT	2 cut(s)	393, 1068
StyD4I	CCNGG	2 cut(s)	382, 804
StyI	CCWWGG	4 cut(s)	171, 733, 1243, 1569
TaaI	ACNGT	1 cut(s)	788
TaiI	ACGT	2 cut(s)	2121, 2136
TaqI	TCGA	3 cut(s)	570, 1432, 2221
TfiI	GAWTC	5 cut(s)	178, 760, 1263, 1719, 1774
Tru1I	TTAA	8 cut(s)	56, 321, 366, 791, 878, 1649, 1668, 1779
Tru9I	TTAA	8 cut(s)	56, 321, 366, 791, 878, 1649, 1668, 1779
TscAI	CASTG	3 cut(s)	199, 1662, 2117
TseI	GCWGC	3 cut(s)	559, 636, 1283
TspDTI	ATGAA	9 cut(s)	174, 350, 450, 473, 585, 975, 1677, 1691, 2072
TspGWI	ACGGA	2 cut(s)	1940, 2219
TspRI	CASTG	3 cut(s)	199, 1662, 2117
Van91I	CCANNNNNTGG	1 cut(s)	989
VpaK11BI	GGWCC	2 cut(s)	1520, 1813
VspI	ATTAAT	1 cut(s)	1649
XagI	CCTNNNNNAGG	2 cut(s)	387, 1679
XapI	RAATTY	7 cut(s)	15, 87, 437, 541, 880, 1194, 1229
XbaI	TCTAGA	3 cut(s)	133, 1306, 1399
XceI	RCATGY	4 cut(s)	403, 1164, 1509, 1914
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1849
XmiI	GTMKAC	1 cut(s)	1764
XmnI	GAANNNNTTC	2 cut(s)	201, 592
XspI	CTAG	6 cut(s)	134, 245, 584, 1307, 1400, 1955
Zsp2I	ATGCAT	1 cut(s)	1870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.